Wall clock time and date at job start Mon Mar 30 2020 23:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35988 * 117.00212 * 2 1 4 4 C 1.38548 * 120.07838 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.01110 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.90971 * 179.97438 * 5 4 3 7 7 C 1.38271 * 120.17776 * 359.97438 * 5 4 3 8 8 C 1.38209 * 120.16424 * 359.68421 * 7 5 4 9 9 C 1.38712 * 119.98003 * 0.61678 * 8 7 5 10 10 N 1.40170 * 120.08928 * 179.67860 * 9 8 7 11 11 C 1.34779 * 119.99736 * 335.22371 * 10 9 8 12 12 O 1.21592 * 119.99860 * 354.31880 * 11 10 9 13 13 N 1.34772 * 120.00016 * 174.05286 * 11 10 9 14 14 C 1.46504 * 119.99914 * 0.27261 * 13 11 10 15 15 C 1.46494 * 120.00372 * 180.27138 * 13 11 10 16 16 C 1.50696 * 109.47471 * 89.99623 * 15 13 11 17 17 H 1.08008 * 119.99575 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00620 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99615 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47060 * 89.99972 * 20 18 16 22 22 H 1.48501 * 109.46784 * 209.99543 * 20 18 16 23 23 H 1.48491 * 109.47318 * 329.99501 * 20 18 16 24 24 H 1.09007 * 109.47217 * 300.00000 * 1 2 3 25 25 H 1.09003 * 109.47135 * 60.00102 * 1 2 3 26 26 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 27 27 H 1.07993 * 119.99309 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47195 * 89.99859 * 6 5 4 29 29 H 1.09006 * 109.46928 * 209.99404 * 6 5 4 30 30 H 1.08993 * 109.47284 * 329.99308 * 6 5 4 31 31 H 1.07999 * 119.91949 * 179.97438 * 7 5 4 32 32 H 1.07994 * 120.01029 * 180.30205 * 8 7 5 33 33 H 0.96996 * 120.00098 * 155.21533 * 10 9 8 34 34 H 1.08997 * 109.47305 * 89.99777 * 14 13 11 35 35 H 1.08998 * 109.47284 * 210.00288 * 14 13 11 36 36 H 1.09002 * 109.46878 * 329.99973 * 14 13 11 37 37 H 1.08996 * 109.47653 * 210.00304 * 15 13 11 38 38 H 1.09008 * 109.46883 * 329.99996 * 15 13 11 39 39 H 0.96997 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 0.0000 6 6 1.1013 4.8693 0.0000 7 6 3.3032 3.6807 -0.0005 8 6 4.0614 2.5251 0.0060 9 6 3.4372 1.2864 0.0003 10 7 4.2040 0.1131 0.0001 11 6 5.4617 0.1301 -0.4841 12 8 5.8954 1.1346 -1.0145 13 7 6.2405 -0.9645 -0.3755 14 6 5.7179 -2.1748 0.2635 15 6 7.6095 -0.9441 -0.8965 16 6 8.5510 -0.4764 0.1833 17 1 8.1678 -0.2204 1.1601 18 6 9.9014 -0.3754 -0.0757 19 7 10.3680 -0.6876 -1.2650 20 14 11.0684 0.2037 1.2630 21 1 11.5568 -0.9674 2.0345 22 1 12.2221 0.9049 0.6445 23 1 10.3543 1.1338 2.1739 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2149 2.3195 0.0005 28 1 0.9036 5.1741 1.0277 29 1 1.6494 5.6588 -0.5142 30 1 0.1570 4.6889 -0.5135 31 1 3.7903 4.6445 -0.0014 32 1 5.1396 2.5866 0.0105 33 1 3.8296 -0.7110 0.3486 34 1 5.2468 -2.8081 -0.4882 35 1 6.5360 -2.7185 0.7358 36 1 4.9819 -1.8982 1.0184 37 1 7.8920 -1.9474 -1.2153 38 1 7.6647 -0.2638 -1.7464 39 1 11.3181 -0.6169 -1.4472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085575410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:41 Heat of formation + Delta-G solvation = -30.573535 kcal Electronic energy + Delta-G solvation = -21578.852018 eV Core-core repulsion = 18294.481997 eV Total energy + Delta-G solvation = -3284.370021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57635 -39.18505 -37.43290 -35.14751 -34.43828 -32.60417 -31.13045 -29.99468 -27.98464 -27.65537 -26.27875 -25.31816 -23.02337 -22.27925 -21.24441 -19.31268 -18.16337 -17.27593 -16.71817 -16.51860 -15.89310 -15.68501 -14.96756 -14.75460 -14.29318 -13.96631 -13.77753 -13.67094 -13.62823 -13.05277 -12.84752 -12.37532 -12.18399 -12.16939 -12.00998 -11.79119 -11.38482 -11.23589 -11.12475 -10.94685 -10.88026 -10.54961 -10.13044 -9.96219 -9.61630 -9.14243 -8.41391 -8.37760 -7.75484 -7.32375 -6.01788 -4.06486 1.49391 1.57894 3.15594 3.31505 3.32253 3.38814 3.44499 3.70634 4.13777 4.43396 4.58184 4.77915 4.96507 5.01454 5.02467 5.13646 5.31979 5.32999 5.39707 5.54038 5.56127 5.66429 5.69907 5.89170 5.90913 6.06003 6.16288 6.30330 6.42885 6.72655 6.83659 6.87901 7.08820 7.39152 7.50446 7.54618 7.72171 7.96507 8.25673 8.62221 8.94519 9.27337 9.58929 11.06084 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.004344 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.761972 B = 6443.982091 C = 7274.840323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.084 3.916 4 C -0.188 4.188 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.096 4.096 9 C 0.156 3.844 10 N -0.686 5.686 11 C 0.698 3.302 12 O -0.569 6.569 13 N -0.611 5.611 14 C 0.083 3.917 15 C 0.259 3.741 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.405 0.595 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.894 2.694 3.965 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.235 6.235 3 C 0.037 3.963 4 C -0.207 4.207 5 C -0.087 4.087 6 C -0.165 4.165 7 C -0.149 4.149 8 C -0.116 4.116 9 C 0.059 3.941 10 N -0.334 5.334 11 C 0.400 3.600 12 O -0.446 6.446 13 N -0.347 5.347 14 C -0.062 4.062 15 C 0.140 3.860 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.144 0.856 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.177 0.823 33 H 0.242 0.758 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.193 3.116 3.456 20.723 hybrid contribution 0.238 -0.147 0.905 0.947 sum -19.956 2.968 4.361 20.641 Atomic orbital electron populations 1.22974 0.78690 1.03555 1.01106 1.86003 1.21097 1.26752 1.89619 1.18607 0.90259 0.84724 1.02734 1.20752 0.99184 0.91278 1.09465 1.19586 0.93980 0.94271 1.00829 1.20715 0.99005 0.94801 1.01938 1.20882 0.92700 0.98319 1.02964 1.21513 1.02588 0.89476 0.98037 1.16965 0.86276 0.87235 1.03658 1.42808 1.14023 1.11100 1.65494 1.15916 0.79823 0.84645 0.79651 1.90838 1.73132 1.31677 1.48982 1.47495 1.15664 1.10713 1.60786 1.21602 0.99666 0.88268 0.96619 1.19253 0.73515 0.97984 0.95248 1.21461 0.91842 1.44927 0.98289 0.92449 1.24924 0.98123 0.95325 0.95696 1.69933 1.14186 1.48619 1.20685 0.86493 0.80379 0.78804 0.81720 1.20688 1.21089 1.19907 0.92911 0.92875 0.88516 0.85639 0.91497 0.91555 0.92052 0.85810 0.82272 0.75839 0.93650 0.90256 0.93034 0.94782 0.93615 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.14 9.91 -19.70 -0.20 -4.33 16 3 C 0.08 1.23 6.70 -39.08 -0.26 0.97 16 4 C -0.19 -2.35 8.69 -39.46 -0.34 -2.69 16 5 C -0.09 -1.08 5.88 -104.61 -0.62 -1.69 16 6 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 7 C -0.13 -1.90 9.69 -39.58 -0.38 -2.28 16 8 C -0.10 -1.71 8.72 -39.42 -0.34 -2.05 16 9 C 0.16 2.72 6.45 -83.48 -0.54 2.18 16 10 N -0.69 -12.40 5.12 -14.10 -0.07 -12.47 16 11 C 0.70 15.56 8.08 -86.92 -0.70 14.86 16 12 O -0.57 -14.77 13.09 5.28 0.07 -14.70 16 13 N -0.61 -13.46 2.86 -188.74 -0.54 -14.00 16 14 C 0.08 1.36 10.16 59.85 0.61 1.96 16 15 C 0.26 6.88 5.16 -5.20 -0.03 6.85 16 16 C -0.53 -15.05 9.38 -34.44 -0.32 -15.37 16 17 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 20 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 24 H 0.05 0.37 7.66 -51.92 -0.40 -0.03 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.16 3.31 5.79 -52.49 -0.30 3.00 16 33 H 0.41 6.24 6.15 -40.82 -0.25 5.99 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 36 H 0.05 0.71 6.45 -51.93 -0.33 0.37 16 37 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.05 1.36 7.42 -51.92 -0.39 0.98 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -33.84 327.66 -7.07 -40.92 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.32 Total: 3.62 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.68 Total: 5.03 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.13 Total: -52.46 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.13 Total: -19.03 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.84 -7.07 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085575410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.344 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds