Wall clock time and date at job start Mon Mar 30 2020 23:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35988 * 117.00212 * 2 1 4 4 C 1.38548 * 120.07838 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.01110 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.90971 * 179.97438 * 5 4 3 7 7 C 1.38271 * 120.17776 * 359.97438 * 5 4 3 8 8 C 1.38209 * 120.16424 * 359.68421 * 7 5 4 9 9 C 1.38712 * 119.98003 * 0.61678 * 8 7 5 10 10 N 1.40170 * 120.08928 * 179.67860 * 9 8 7 11 11 C 1.34779 * 119.99736 * 335.22371 * 10 9 8 12 12 O 1.21592 * 119.99860 * 354.31880 * 11 10 9 13 13 N 1.34772 * 120.00016 * 174.05286 * 11 10 9 14 14 C 1.46504 * 119.99914 * 0.27261 * 13 11 10 15 15 C 1.46494 * 120.00372 * 180.27138 * 13 11 10 16 16 C 1.50696 * 109.47471 * 89.99623 * 15 13 11 17 17 H 1.08008 * 119.99575 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00620 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99615 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47060 * 89.99972 * 20 18 16 22 22 H 1.48501 * 109.46784 * 209.99543 * 20 18 16 23 23 H 1.48491 * 109.47318 * 329.99501 * 20 18 16 24 24 H 1.09007 * 109.47217 * 300.00000 * 1 2 3 25 25 H 1.09003 * 109.47135 * 60.00102 * 1 2 3 26 26 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 27 27 H 1.07993 * 119.99309 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47195 * 89.99859 * 6 5 4 29 29 H 1.09006 * 109.46928 * 209.99404 * 6 5 4 30 30 H 1.08993 * 109.47284 * 329.99308 * 6 5 4 31 31 H 1.07999 * 119.91949 * 179.97438 * 7 5 4 32 32 H 1.07994 * 120.01029 * 180.30205 * 8 7 5 33 33 H 0.96996 * 120.00098 * 155.21533 * 10 9 8 34 34 H 1.08997 * 109.47305 * 89.99777 * 14 13 11 35 35 H 1.08998 * 109.47284 * 210.00288 * 14 13 11 36 36 H 1.09002 * 109.46878 * 329.99973 * 14 13 11 37 37 H 1.08996 * 109.47653 * 210.00304 * 15 13 11 38 38 H 1.09008 * 109.46883 * 329.99996 * 15 13 11 39 39 H 0.96997 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 0.0000 6 6 1.1013 4.8693 0.0000 7 6 3.3032 3.6807 -0.0005 8 6 4.0614 2.5251 0.0060 9 6 3.4372 1.2864 0.0003 10 7 4.2040 0.1131 0.0001 11 6 5.4617 0.1301 -0.4841 12 8 5.8954 1.1346 -1.0145 13 7 6.2405 -0.9645 -0.3755 14 6 5.7179 -2.1748 0.2635 15 6 7.6095 -0.9441 -0.8965 16 6 8.5510 -0.4764 0.1833 17 1 8.1678 -0.2204 1.1601 18 6 9.9014 -0.3754 -0.0757 19 7 10.3680 -0.6876 -1.2650 20 14 11.0684 0.2037 1.2630 21 1 11.5568 -0.9674 2.0345 22 1 12.2221 0.9049 0.6445 23 1 10.3543 1.1338 2.1739 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2149 2.3195 0.0005 28 1 0.9036 5.1741 1.0277 29 1 1.6494 5.6588 -0.5142 30 1 0.1570 4.6889 -0.5135 31 1 3.7903 4.6445 -0.0014 32 1 5.1396 2.5866 0.0105 33 1 3.8296 -0.7110 0.3486 34 1 5.2468 -2.8081 -0.4882 35 1 6.5360 -2.7185 0.7358 36 1 4.9819 -1.8982 1.0184 37 1 7.8920 -1.9474 -1.2153 38 1 7.6647 -0.2638 -1.7464 39 1 11.3181 -0.6169 -1.4472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085575410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:40 Heat of formation + Delta-G solvation = -53.071411 kcal Electronic energy + Delta-G solvation = -21579.827599 eV Core-core repulsion = 18294.481997 eV Total energy + Delta-G solvation = -3285.345602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89680 -40.57055 -38.48416 -36.81452 -36.02148 -34.69228 -32.34106 -31.07387 -29.74633 -28.57586 -27.59263 -26.72867 -24.87916 -23.48929 -22.42643 -20.89257 -19.54956 -18.71531 -18.48410 -18.01793 -17.06319 -16.81151 -16.61041 -16.34540 -15.94873 -15.21717 -14.90925 -14.84707 -14.71926 -14.46090 -14.33463 -13.91501 -13.50734 -13.30993 -13.17300 -13.05104 -12.93198 -12.77228 -12.53334 -12.39033 -12.19472 -12.10191 -11.90581 -11.73162 -11.29315 -10.84599 -10.63312 -9.59854 -9.45094 -8.60650 -8.20842 -6.36486 0.32467 0.44866 1.36677 1.39890 1.50050 1.70135 2.14301 2.33476 2.39437 2.84974 3.04226 3.09048 3.86282 3.96656 4.19573 4.27723 4.31680 4.42139 4.46933 4.52584 4.61561 4.76932 4.79875 4.82487 4.89754 4.92170 4.94317 5.09739 5.19013 5.21963 5.35849 5.53963 5.61859 5.68801 5.77265 5.90900 6.06085 6.07237 6.46516 6.71727 7.02407 7.30399 7.60396 8.85306 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.004344 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.761972 B = 6443.982091 C = 7274.840323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.094 3.906 4 C -0.183 4.183 5 C -0.073 4.073 6 C -0.107 4.107 7 C -0.142 4.142 8 C -0.121 4.121 9 C 0.114 3.886 10 N -0.669 5.669 11 C 0.692 3.308 12 O -0.618 6.618 13 N -0.620 5.620 14 C 0.078 3.922 15 C 0.276 3.724 16 C -0.544 4.544 17 H 0.050 0.950 18 C 0.010 3.990 19 N -0.927 5.927 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.276 1.276 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.164 0.836 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.417 0.583 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.000 1.000 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.827 2.902 5.428 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.046 3.954 4 C -0.202 4.202 5 C -0.074 4.074 6 C -0.163 4.163 7 C -0.161 4.161 8 C -0.141 4.141 9 C 0.018 3.982 10 N -0.318 5.318 11 C 0.394 3.606 12 O -0.498 6.498 13 N -0.354 5.354 14 C -0.064 4.064 15 C 0.154 3.846 16 C -0.582 4.582 17 H 0.069 0.931 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.201 1.201 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.182 0.818 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.018 0.982 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.204 3.286 4.950 23.952 hybrid contribution 0.961 -0.190 0.425 1.068 sum -22.243 3.096 5.376 23.092 Atomic orbital electron populations 1.23362 0.75978 1.05632 1.02435 1.85992 1.23821 1.25896 1.89219 1.18620 0.89197 0.86259 1.01293 1.21199 1.00952 0.90241 1.07781 1.20045 0.93239 0.96199 0.97905 1.20811 0.99252 0.92830 1.03424 1.21055 0.93961 0.97651 1.03416 1.21282 1.00980 0.91451 1.00434 1.17196 0.87740 0.86503 1.06711 1.42447 1.12452 1.12151 1.64787 1.16096 0.81022 0.83941 0.79553 1.90806 1.74487 1.33455 1.51058 1.47373 1.14299 1.12579 1.61196 1.21879 1.00273 0.86404 0.97830 1.18720 0.76003 0.96237 0.93590 1.21695 0.92768 1.45402 0.98364 0.93126 1.25830 0.99838 0.95146 0.98120 1.70048 1.14823 1.49266 1.22575 0.85404 0.77887 0.78736 0.78692 1.18696 1.20471 1.20058 0.91193 0.91750 0.86316 0.81820 0.89786 0.90991 0.89879 0.84668 0.86467 0.74369 0.90992 0.90423 0.90159 0.95158 0.98157 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.81 9.91 -93.42 -0.93 -8.74 16 3 C 0.09 2.60 6.70 22.60 0.15 2.75 16 4 C -0.18 -4.00 8.69 22.35 0.19 -3.80 16 5 C -0.07 -1.66 5.88 -19.85 -0.12 -1.78 16 6 C -0.11 -1.52 10.01 71.24 0.71 -0.80 16 7 C -0.14 -4.17 9.69 22.27 0.22 -3.95 16 8 C -0.12 -4.56 8.72 22.38 0.20 -4.37 16 9 C 0.11 4.07 6.45 38.17 0.25 4.32 16 10 N -0.67 -24.81 5.12 -316.79 -1.62 -26.44 16 11 C 0.69 32.54 8.08 179.06 1.45 33.99 16 12 O -0.62 -34.63 13.09 -4.01 -0.05 -34.68 16 13 N -0.62 -28.36 2.86 -869.32 -2.48 -30.84 16 14 C 0.08 2.53 10.16 127.77 1.30 3.83 16 15 C 0.28 15.45 5.16 85.63 0.44 15.89 16 16 C -0.54 -32.26 9.38 25.60 0.24 -32.02 16 17 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 18 C 0.01 0.57 5.46 84.65 0.46 1.03 16 19 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 20 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 25 H 0.06 0.68 7.66 -2.39 -0.02 0.67 16 26 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.16 2.29 6.30 -2.91 -0.02 2.27 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.98 8.08 -2.38 -0.02 0.96 16 30 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.12 5.41 5.79 -2.91 -0.02 5.39 16 33 H 0.42 12.70 6.15 -92.71 -0.57 12.13 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.53 8.07 -2.39 -0.02 2.52 16 36 H 0.08 2.10 6.45 -2.39 -0.02 2.09 16 37 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.00 0.02 7.42 -2.38 -0.02 0.00 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -78.61 327.66 4.32 -74.29 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.49 Total: 18.71 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.60 Total: 16.45 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.82 Total: -113.88 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.98 Total: -43.42 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.61 4.32 -74.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085575410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.214 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds