Wall clock time and date at job start Mon Mar 30 2020 23:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99888 * 2 1 4 4 C 1.38217 * 120.00253 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99475 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99797 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47224 * 90.00077 * 6 5 4 8 8 C 1.46901 * 111.00236 * 293.95838 * 7 6 5 9 9 C 1.46899 * 111.00337 * 169.99923 * 7 6 5 10 10 H 1.08999 * 109.46856 * 310.00211 * 9 7 6 11 11 C 1.53001 * 109.46729 * 70.00213 * 9 7 6 12 12 C 1.50699 * 109.47159 * 190.00052 * 9 7 6 13 13 H 1.07996 * 120.00326 * 0.02562 * 12 9 7 14 14 C 1.37882 * 119.99486 * 180.02562 * 12 9 7 15 15 N 1.31519 * 119.99326 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 120.00474 * 359.97438 * 14 12 9 17 17 H 1.48501 * 109.46751 * 90.00141 * 16 14 12 18 18 H 1.48493 * 109.47202 * 210.00277 * 16 14 12 19 19 H 1.48500 * 109.47054 * 330.00341 * 16 14 12 20 20 C 1.38210 * 120.00463 * 0.02562 * 5 4 3 21 21 C 1.38216 * 120.00324 * 179.72231 * 2 1 3 22 22 N 1.48021 * 119.99779 * 0.02562 * 21 2 1 23 23 O 1.21792 * 119.99961 * 186.18575 * 22 21 2 24 24 O 1.21804 * 120.00141 * 6.17221 * 22 21 2 25 25 H 1.08994 * 109.46915 * 96.92033 * 1 2 3 26 26 H 1.09000 * 109.47026 * 336.91466 * 1 2 3 27 27 H 1.09002 * 109.46666 * 216.91665 * 1 2 3 28 28 H 1.08000 * 120.00112 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.99894 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47225 * 209.99975 * 6 5 4 31 31 H 1.08999 * 109.47175 * 330.00247 * 6 5 4 32 32 H 1.08998 * 109.47193 * 59.99633 * 8 7 6 33 33 H 1.08996 * 109.47749 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.46451 * 299.99767 * 8 7 6 35 35 H 1.09003 * 109.46993 * 299.99621 * 11 9 7 36 36 H 1.08999 * 109.47453 * 60.00364 * 11 9 7 37 37 H 1.09006 * 109.47057 * 180.02562 * 11 9 7 38 38 H 0.97003 * 119.99381 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00068 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 7 6.2674 0.0007 1.3881 8 6 5.9173 1.2543 2.0693 9 6 7.7161 -0.2374 1.4355 10 1 7.9603 -1.1129 0.8339 11 6 8.4521 0.9839 0.8809 12 6 8.1399 -0.4741 2.8622 13 1 7.4063 -0.4505 3.6544 14 6 9.4642 -0.7209 3.1560 15 7 9.8341 -0.9270 4.4012 16 14 10.7330 -0.7625 1.7857 17 1 11.2891 0.5997 1.5846 18 1 11.8285 -1.6951 2.1535 19 1 10.0900 -1.2250 0.5296 20 6 3.5807 -1.1969 0.0016 21 6 2.1982 -1.1969 0.0058 22 7 1.4581 -2.4788 0.0114 23 8 2.0617 -3.5300 0.1302 24 8 0.2454 -2.4825 -0.1024 25 1 -0.3633 -0.1238 -1.0201 26 1 -0.3633 0.9454 0.4030 27 1 -0.3633 -0.8217 0.6173 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1327 0.0010 30 1 6.1425 -0.8901 -0.5104 31 1 6.1425 0.8899 -0.5111 32 1 4.8336 1.3712 2.0808 33 1 6.2912 1.2284 3.0928 34 1 6.3677 2.0937 1.5394 35 1 8.1456 1.1551 -0.1511 36 1 8.2079 1.8595 1.4825 37 1 9.5271 0.8071 0.9156 38 1 10.7657 -1.1009 4.6079 39 1 4.1208 -2.1322 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:37 Heat of formation + Delta-G solvation = 37.565596 kcal Electronic energy + Delta-G solvation = -21677.380854 eV Core-core repulsion = 18395.965568 eV Total energy + Delta-G solvation = -3281.415286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21432 -39.89090 -37.55267 -36.60683 -33.89451 -32.36634 -31.98731 -30.02418 -28.51532 -26.64350 -25.84495 -25.30621 -23.40165 -22.72780 -21.44614 -19.52713 -18.68519 -18.31446 -17.55299 -16.70519 -16.11492 -15.94428 -15.50619 -14.80011 -14.51530 -14.02409 -13.97531 -13.55555 -13.18647 -12.88650 -12.67109 -12.49813 -12.31969 -12.26003 -11.80622 -11.52543 -11.36575 -11.32531 -11.21217 -11.09350 -10.94107 -10.65211 -10.39092 -10.12733 -9.66948 -9.60352 -9.20080 -8.99468 -8.65232 -7.55107 -6.13240 -4.12247 -0.12574 0.86386 1.35829 1.45425 3.16799 3.19078 3.28957 3.32997 4.22488 4.26445 4.32437 4.52598 4.68205 4.83700 4.87626 5.02153 5.18280 5.25747 5.36176 5.40203 5.50757 5.68616 5.76909 5.82895 5.90010 5.93089 6.00682 6.10139 6.11760 6.16442 6.27928 6.40749 6.54767 6.55746 6.74141 7.03561 7.50631 7.70784 7.75166 7.88440 8.55466 8.94332 9.47820 10.99805 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.004183 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.717458 B = 6691.717123 C = 7164.107025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.025 4.025 3 C -0.126 4.126 4 C -0.057 4.057 5 C -0.066 4.066 6 C 0.084 3.916 7 N -0.518 5.518 8 C 0.028 3.972 9 C 0.182 3.818 10 H 0.041 0.959 11 C -0.187 4.187 12 C -0.504 4.504 13 H 0.082 0.918 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.296 1.296 19 H -0.268 1.268 20 C -0.031 4.031 21 C -0.049 4.049 22 N 0.035 4.965 23 O -0.165 6.165 24 O -0.169 6.169 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.019 0.981 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.265 0.735 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 6.181 -11.439 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 C -0.144 4.144 4 C -0.076 4.076 5 C -0.068 4.068 6 C -0.044 4.044 7 N -0.241 5.241 8 C -0.120 4.120 9 C 0.074 3.926 10 H 0.059 0.941 11 C -0.246 4.246 12 C -0.542 4.542 13 H 0.100 0.900 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.223 1.223 19 H -0.194 1.194 20 C -0.050 4.050 21 C -0.133 4.133 22 N 0.550 4.450 23 O -0.379 6.379 24 O -0.381 6.381 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.407 6.340 -11.055 19.235 hybrid contribution 1.171 0.390 -1.033 1.610 sum -13.237 6.730 -12.089 19.148 Atomic orbital electron populations 1.21265 0.88845 1.04265 1.04251 1.19815 0.97783 0.90592 0.94484 1.21054 0.94051 0.96933 1.02407 1.21573 0.94087 0.98675 0.93255 1.19953 0.97111 0.91341 0.98382 1.21132 0.88238 1.01949 0.93083 1.62234 1.16892 1.34129 1.10810 1.22385 0.98695 0.89850 1.01118 1.19826 0.81565 0.92697 0.98477 0.94103 1.22844 1.01120 1.02384 0.98238 1.20884 0.94068 1.48332 0.90925 0.89987 1.24914 0.98207 0.94781 0.95221 1.69876 1.17329 1.48601 1.17729 0.86892 0.81436 0.77184 0.82821 1.20786 1.22301 1.19369 1.20960 0.90438 1.00839 0.92804 1.20935 0.92447 0.82986 1.16920 1.43597 1.00995 1.02936 0.97426 1.94567 1.70077 1.20092 1.53196 1.94430 0.96512 1.93787 1.53402 0.89724 0.91062 0.88496 0.83908 0.84327 0.89781 0.93735 0.93505 0.89842 0.96210 0.95357 0.92351 0.93505 0.92536 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.70 36.01 0.31 -0.85 16 2 C -0.03 -0.28 5.88 -104.62 -0.62 -0.89 16 3 C -0.13 -1.17 9.67 -39.58 -0.38 -1.56 16 4 C -0.06 -0.60 7.97 -39.58 -0.32 -0.91 16 5 C -0.07 -0.86 4.88 -104.62 -0.51 -1.37 16 6 C 0.08 1.24 4.69 -4.98 -0.02 1.21 16 7 N -0.52 -9.72 4.69 -237.73 -1.12 -10.84 16 8 C 0.03 0.47 8.27 60.07 0.50 0.97 16 9 C 0.18 4.01 1.90 -68.86 -0.13 3.88 16 10 H 0.04 0.94 6.99 -51.93 -0.36 0.58 16 11 C -0.19 -3.76 7.92 37.16 0.29 -3.47 16 12 C -0.50 -13.52 8.49 -34.44 -0.29 -13.81 16 13 H 0.08 2.43 7.37 -52.49 -0.39 2.04 16 14 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 15 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 16 Si 0.89 21.16 24.37 -169.99 -4.14 17.02 16 17 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 18 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.10 6.53 56.52 0.37 -5.73 16 20 C -0.03 -0.42 9.21 -39.59 -0.36 -0.79 16 21 C -0.05 -0.67 6.83 -79.95 -0.55 -1.21 16 22 N 0.03 0.52 4.45 33.96 0.15 0.67 16 23 O -0.16 -2.70 18.47 -29.46 -0.54 -3.24 16 24 O -0.17 -2.44 15.35 -29.46 -0.45 -2.89 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.47 8.04 -51.93 -0.42 0.06 16 27 H 0.10 0.99 5.84 -51.93 -0.30 0.69 16 28 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 29 H 0.14 1.20 8.03 -52.49 -0.42 0.78 16 30 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 31 H 0.04 0.60 7.00 -51.93 -0.36 0.24 16 32 H 0.05 0.69 6.17 -51.93 -0.32 0.37 16 33 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 34 H 0.02 0.31 6.46 -51.93 -0.34 -0.03 16 35 H 0.03 0.48 6.91 -51.93 -0.36 0.12 16 36 H 0.06 1.15 6.42 -51.93 -0.33 0.81 16 37 H 0.05 1.00 3.27 -51.93 -0.17 0.84 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.15 2.15 7.63 -52.48 -0.40 1.75 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -30.16 310.92 -7.78 -37.94 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.96 Total: -0.44 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.17 Total: -16.92 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.19 Total: -36.16 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -1.00 Total: -6.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.16 -7.78 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.502 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds