Wall clock time and date at job start Mon Mar 30 2020 23:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99888 * 2 1 4 4 C 1.38217 * 120.00253 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99475 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99797 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47224 * 90.00077 * 6 5 4 8 8 C 1.46901 * 111.00236 * 293.95838 * 7 6 5 9 9 C 1.46899 * 111.00337 * 169.99923 * 7 6 5 10 10 H 1.08999 * 109.46856 * 310.00211 * 9 7 6 11 11 C 1.53001 * 109.46729 * 70.00213 * 9 7 6 12 12 C 1.50699 * 109.47159 * 190.00052 * 9 7 6 13 13 H 1.07996 * 120.00326 * 0.02562 * 12 9 7 14 14 C 1.37882 * 119.99486 * 180.02562 * 12 9 7 15 15 N 1.31519 * 119.99326 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 120.00474 * 359.97438 * 14 12 9 17 17 H 1.48501 * 109.46751 * 90.00141 * 16 14 12 18 18 H 1.48493 * 109.47202 * 210.00277 * 16 14 12 19 19 H 1.48500 * 109.47054 * 330.00341 * 16 14 12 20 20 C 1.38210 * 120.00463 * 0.02562 * 5 4 3 21 21 C 1.38216 * 120.00324 * 179.72231 * 2 1 3 22 22 N 1.48021 * 119.99779 * 0.02562 * 21 2 1 23 23 O 1.21792 * 119.99961 * 186.18575 * 22 21 2 24 24 O 1.21804 * 120.00141 * 6.17221 * 22 21 2 25 25 H 1.08994 * 109.46915 * 96.92033 * 1 2 3 26 26 H 1.09000 * 109.47026 * 336.91466 * 1 2 3 27 27 H 1.09002 * 109.46666 * 216.91665 * 1 2 3 28 28 H 1.08000 * 120.00112 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.99894 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47225 * 209.99975 * 6 5 4 31 31 H 1.08999 * 109.47175 * 330.00247 * 6 5 4 32 32 H 1.08998 * 109.47193 * 59.99633 * 8 7 6 33 33 H 1.08996 * 109.47749 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.46451 * 299.99767 * 8 7 6 35 35 H 1.09003 * 109.46993 * 299.99621 * 11 9 7 36 36 H 1.08999 * 109.47453 * 60.00364 * 11 9 7 37 37 H 1.09006 * 109.47057 * 180.02562 * 11 9 7 38 38 H 0.97003 * 119.99381 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00068 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 7 6.2674 0.0007 1.3881 8 6 5.9173 1.2543 2.0693 9 6 7.7161 -0.2374 1.4355 10 1 7.9603 -1.1129 0.8339 11 6 8.4521 0.9839 0.8809 12 6 8.1399 -0.4741 2.8622 13 1 7.4063 -0.4505 3.6544 14 6 9.4642 -0.7209 3.1560 15 7 9.8341 -0.9270 4.4012 16 14 10.7330 -0.7625 1.7857 17 1 11.2891 0.5997 1.5846 18 1 11.8285 -1.6951 2.1535 19 1 10.0900 -1.2250 0.5296 20 6 3.5807 -1.1969 0.0016 21 6 2.1982 -1.1969 0.0058 22 7 1.4581 -2.4788 0.0114 23 8 2.0617 -3.5300 0.1302 24 8 0.2454 -2.4825 -0.1024 25 1 -0.3633 -0.1238 -1.0201 26 1 -0.3633 0.9454 0.4030 27 1 -0.3633 -0.8217 0.6173 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1327 0.0010 30 1 6.1425 -0.8901 -0.5104 31 1 6.1425 0.8899 -0.5111 32 1 4.8336 1.3712 2.0808 33 1 6.2912 1.2284 3.0928 34 1 6.3677 2.0937 1.5394 35 1 8.1456 1.1551 -0.1511 36 1 8.2079 1.8595 1.4825 37 1 9.5271 0.8071 0.9156 38 1 10.7657 -1.1009 4.6079 39 1 4.1208 -2.1322 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:37 Heat of formation + Delta-G solvation = 18.317189 kcal Electronic energy + Delta-G solvation = -21678.215528 eV Core-core repulsion = 18395.965568 eV Total energy + Delta-G solvation = -3282.249960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.31982 -40.87839 -38.95210 -37.75822 -35.24436 -34.04523 -32.90748 -31.54696 -29.60335 -27.82147 -27.21221 -26.92000 -24.67574 -23.69328 -22.52900 -21.15249 -19.78466 -19.41508 -18.68755 -18.64233 -17.28752 -16.90450 -16.84054 -16.32970 -15.64756 -15.41418 -14.96559 -14.75443 -14.59652 -14.19354 -13.95428 -13.76218 -13.42240 -13.27692 -13.12066 -12.99142 -12.86158 -12.52551 -12.47297 -12.38238 -12.24971 -12.05705 -11.84687 -11.64556 -11.44266 -11.11271 -10.76330 -10.52537 -9.94024 -8.96340 -8.27668 -6.30598 -1.17425 -0.02846 0.33615 0.42486 1.29384 1.36336 1.45790 2.25731 2.31883 3.07065 3.25995 3.40461 3.43068 3.75621 3.88345 3.95756 4.09185 4.37943 4.41123 4.43549 4.52522 4.58455 4.63238 4.66796 4.71208 4.75936 4.81526 4.90641 4.99702 5.06687 5.09890 5.21235 5.23678 5.33348 5.42945 5.61774 5.62894 6.00650 6.37151 6.54119 6.65876 6.76364 7.34076 8.89443 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.004183 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.717458 B = 6691.717123 C = 7164.107025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.021 4.021 3 C -0.111 4.111 4 C -0.046 4.046 5 C -0.078 4.078 6 C 0.087 3.913 7 N -0.542 5.542 8 C 0.035 3.965 9 C 0.184 3.816 10 H 0.033 0.967 11 C -0.181 4.181 12 C -0.502 4.502 13 H 0.035 0.965 14 C 0.010 3.990 15 N -0.951 5.951 16 Si 0.951 3.049 17 H -0.266 1.266 18 H -0.303 1.303 19 H -0.247 1.247 20 C -0.048 4.048 21 C -0.070 4.070 22 N 0.035 4.965 23 O -0.229 6.229 24 O -0.142 6.142 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.188 0.812 29 H 0.168 0.832 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.040 9.335 -14.123 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.023 4.023 3 C -0.129 4.129 4 C -0.064 4.064 5 C -0.080 4.080 6 C -0.040 4.040 7 N -0.265 5.265 8 C -0.113 4.113 9 C 0.076 3.924 10 H 0.051 0.949 11 C -0.239 4.239 12 C -0.541 4.541 13 H 0.053 0.947 14 C -0.187 4.187 15 N -0.592 5.592 16 Si 0.778 3.222 17 H -0.192 1.192 18 H -0.231 1.231 19 H -0.171 1.171 20 C -0.068 4.068 21 C -0.154 4.154 22 N 0.546 4.454 23 O -0.429 6.429 24 O -0.364 6.364 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.205 0.795 29 H 0.186 0.814 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.697 9.418 -13.750 22.895 hybrid contribution 1.338 -0.482 -0.159 1.431 sum -14.359 8.936 -13.910 21.898 Atomic orbital electron populations 1.21343 0.87180 1.05404 1.04739 1.20268 0.99083 0.90055 0.92881 1.21535 0.93652 0.97707 0.99973 1.21924 0.94824 0.98529 0.91168 1.19822 0.96068 0.92019 1.00062 1.21123 0.89494 1.02848 0.90516 1.62029 1.14823 1.35604 1.14030 1.22297 1.00262 0.89827 0.98942 1.19580 0.84196 0.93641 0.94951 0.94880 1.22692 0.99845 1.00973 1.00428 1.21175 0.93149 1.47009 0.92739 0.94660 1.25789 1.00652 0.94662 0.97568 1.70049 1.17810 1.50983 1.20353 0.85831 0.78318 0.77716 0.80295 1.19170 1.23100 1.17093 1.20900 0.90876 1.00798 0.94214 1.21138 0.92479 0.82758 1.19009 1.43895 1.01039 1.03468 0.96974 1.94576 1.70292 1.21276 1.56726 1.94384 0.96781 1.93937 1.51309 0.88625 0.87841 0.90142 0.79518 0.81435 0.90318 0.91274 0.90934 0.93838 0.94104 0.91500 0.92209 0.94708 0.92647 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.70 71.24 0.62 -1.21 16 2 C -0.02 -0.39 5.88 -19.86 -0.12 -0.51 16 3 C -0.11 -1.47 9.67 22.27 0.22 -1.26 16 4 C -0.05 -0.74 7.97 22.27 0.18 -0.57 16 5 C -0.08 -1.84 4.88 -19.87 -0.10 -1.94 16 6 C 0.09 2.37 4.69 85.56 0.40 2.77 16 7 N -0.54 -19.83 4.69 -906.04 -4.25 -24.08 16 8 C 0.03 1.13 8.27 127.69 1.06 2.18 16 9 C 0.18 8.00 1.90 44.17 0.08 8.09 16 10 H 0.03 1.49 6.99 -2.39 -0.02 1.48 16 11 C -0.18 -6.73 7.92 71.98 0.57 -6.16 16 12 C -0.50 -27.83 8.49 25.60 0.22 -27.61 16 13 H 0.04 2.22 7.37 -2.91 -0.02 2.20 16 14 C 0.01 0.58 5.45 84.66 0.46 1.04 16 15 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 16 Si 0.95 43.70 24.37 68.60 1.67 45.37 16 17 H -0.27 -11.48 6.87 99.48 0.68 -10.80 16 18 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 19 H -0.25 -10.38 6.53 99.48 0.65 -9.73 16 20 C -0.05 -1.31 9.21 22.27 0.21 -1.11 16 21 C -0.07 -1.83 6.83 36.37 0.25 -1.58 16 22 N 0.03 1.07 4.45 -46.46 -0.21 0.86 16 23 O -0.23 -8.09 18.47 18.90 0.35 -7.74 16 24 O -0.14 -4.00 15.35 18.88 0.29 -3.71 16 25 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.10 0.81 8.04 -2.39 -0.02 0.79 16 27 H 0.08 1.45 5.84 -2.39 -0.01 1.43 16 28 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.17 1.80 8.03 -2.91 -0.02 1.78 16 30 H 0.08 2.19 7.87 -2.39 -0.02 2.17 16 31 H 0.07 1.54 7.00 -2.39 -0.02 1.53 16 32 H 0.07 1.94 6.17 -2.39 -0.01 1.93 16 33 H 0.04 1.75 6.76 -2.39 -0.02 1.73 16 34 H 0.04 1.14 6.46 -2.38 -0.02 1.13 16 35 H 0.07 1.97 6.91 -2.39 -0.02 1.96 16 36 H 0.06 2.19 6.42 -2.39 -0.02 2.17 16 37 H 0.03 1.38 3.27 -2.38 -0.01 1.37 16 38 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.13 4.07 7.63 -2.91 -0.02 4.05 16 Total: -1.00 -70.67 310.92 3.18 -67.49 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.99 Total: 8.49 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 4.04 Total: -27.86 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -4.16 Total: -82.03 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.64 Total: -11.45 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.37 kcal Total: -70.67 3.18 -67.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.807 kcal (2) G-P(sol) polarization free energy of solvation -70.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds