Wall clock time and date at job start Tue Mar 31 2020 00:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99685 * 2 1 4 4 C 1.52999 * 109.47032 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46737 * 65.00182 * 4 3 2 6 6 C 1.46506 * 119.99819 * 269.99719 * 5 4 3 7 7 C 1.50693 * 109.46741 * 97.41132 * 6 5 4 8 8 H 1.08000 * 120.00623 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99723 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00052 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00099 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47065 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46996 * 120.00102 * 11 9 7 14 14 H 1.48506 * 109.46858 * 239.99724 * 11 9 7 15 15 C 1.34769 * 120.00079 * 90.00102 * 5 4 3 16 16 O 1.21515 * 120.00046 * 356.68609 * 15 5 4 17 17 C 1.48172 * 120.00142 * 176.68716 * 15 5 4 18 18 C 1.39309 * 119.72713 * 186.65349 * 17 15 5 19 19 C 1.38583 * 119.06154 * 179.97438 * 18 17 15 20 20 C 1.38626 * 118.49008 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.32547 * 180.02562 * 20 19 18 22 22 C 1.38568 * 119.34996 * 0.02562 * 20 19 18 23 23 N 1.31516 * 120.89945 * 359.74271 * 22 20 19 24 24 H 1.08997 * 109.47663 * 299.99912 * 1 2 3 25 25 H 1.08996 * 109.47230 * 60.00434 * 1 2 3 26 26 H 1.09004 * 109.46871 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46933 * 59.99497 * 3 2 1 28 28 H 1.08996 * 109.47016 * 300.00134 * 3 2 1 29 29 H 1.08993 * 109.47043 * 305.00190 * 4 3 2 30 30 H 1.08998 * 109.47181 * 184.99660 * 4 3 2 31 31 H 1.09001 * 109.46823 * 217.41466 * 6 5 4 32 32 H 1.08999 * 109.46516 * 337.41194 * 6 5 4 33 33 H 0.97000 * 119.99984 * 180.02562 * 10 9 7 34 34 H 1.07999 * 120.46836 * 359.95266 * 18 17 15 35 35 H 1.08004 * 120.75617 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46848 * 89.99941 * 21 20 19 37 37 H 1.09000 * 109.47195 * 209.99847 * 21 20 19 38 38 H 1.08995 * 109.47229 * 330.00056 * 21 20 19 39 39 H 1.07995 * 119.54459 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1063 -0.8924 -1.3404 7 6 2.8654 -1.4693 -1.9714 8 1 2.0607 -0.8164 -2.2759 9 6 2.7572 -2.8309 -2.1601 10 7 3.7367 -3.6261 -1.7889 11 14 1.2192 -3.5460 -2.9430 12 1 0.2728 -2.4486 -3.2674 13 1 1.5871 -4.2673 -4.1878 14 1 0.5750 -4.4908 -1.9955 15 6 4.2632 1.3331 -2.3200 16 8 4.0983 2.5357 -2.2652 17 6 4.7794 0.7120 -3.5623 18 6 5.2047 1.5208 -4.6138 19 6 5.6856 0.9253 -5.7692 20 6 5.7249 -0.4589 -5.8326 21 6 6.2405 -1.1497 -7.0687 22 6 5.2854 -1.2012 -4.7481 23 7 4.8380 -0.6101 -3.6619 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6884 1.8465 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8507 0.5687 0.8426 30 1 3.9784 2.1767 0.0901 31 1 4.9743 -1.1432 -1.9501 32 1 4.2323 -1.3079 -0.3406 33 1 3.6607 -4.5839 -1.9220 34 1 5.1600 2.5966 -4.5300 35 1 6.0228 1.5261 -6.6009 36 1 7.3151 -1.3071 -6.9754 37 1 5.7409 -2.1117 -7.1825 38 1 6.0386 -0.5298 -7.9422 39 1 5.3143 -2.2798 -4.7943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121774086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:52 Heat of formation + Delta-G solvation = -20.966728 kcal Electronic energy + Delta-G solvation = -22583.618652 eV Core-core repulsion = 19299.665213 eV Total energy + Delta-G solvation = -3283.953438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09468 -38.46593 -36.99726 -34.86843 -33.23457 -32.26815 -31.35998 -29.72778 -27.29992 -26.72240 -25.54513 -23.39804 -23.00655 -22.48172 -21.45128 -19.10359 -16.76842 -16.51399 -16.16278 -15.63109 -15.31798 -14.88054 -14.62932 -14.54848 -14.39912 -13.97881 -13.85705 -13.43929 -12.87051 -12.81931 -12.29867 -12.28450 -12.06446 -11.86587 -11.49115 -11.45894 -11.30746 -11.07168 -10.75323 -10.68780 -10.38768 -9.93968 -9.42822 -9.37984 -9.28194 -8.92396 -8.46609 -8.37625 -7.93633 -7.48704 -5.79323 -3.71100 1.23076 1.78957 3.37149 3.43426 3.45698 3.51297 3.90195 4.45897 4.54599 4.61696 4.89096 5.11928 5.19708 5.30292 5.37621 5.58486 5.62992 5.67229 5.69515 5.73671 5.79459 5.85156 5.87348 5.92165 6.07745 6.14145 6.23506 6.28385 6.38398 6.47033 6.57753 6.96679 7.10228 7.72260 7.86209 7.92817 8.14051 8.43419 8.53280 8.57418 9.01633 9.26483 9.83457 11.30605 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.008599 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.253917 B = 3255.498501 C = 4702.967339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.347 6.347 3 C 0.049 3.951 4 C 0.120 3.880 5 N -0.568 5.568 6 C 0.231 3.769 7 C -0.453 4.453 8 H 0.051 0.949 9 C 0.061 3.939 10 N -0.900 5.900 11 Si 0.878 3.122 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.289 1.289 15 C 0.565 3.435 16 O -0.578 6.578 17 C 0.075 3.925 18 C -0.121 4.121 19 C -0.101 4.101 20 C -0.131 4.131 21 C -0.108 4.108 22 C 0.093 3.907 23 N -0.373 5.373 24 H 0.027 0.973 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.023 0.977 33 H 0.254 0.746 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 6.422 -4.167 8.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.264 6.264 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.296 5.296 6 C 0.112 3.888 7 C -0.493 4.493 8 H 0.070 0.930 9 C -0.138 4.138 10 N -0.542 5.542 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.215 1.215 15 C 0.352 3.648 16 O -0.460 6.460 17 C -0.063 4.063 18 C -0.142 4.142 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.165 4.165 22 C -0.066 4.066 23 N -0.083 5.083 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.259 6.161 -3.357 7.371 hybrid contribution -1.093 0.064 -1.191 1.618 sum 1.165 6.225 -4.547 7.797 Atomic orbital electron populations 1.22594 0.83060 1.02111 0.98347 1.88302 1.17665 1.25560 1.94882 1.22844 0.94868 0.86003 0.99179 1.21413 0.92342 0.98969 0.87604 1.48271 1.60988 1.10810 1.09557 1.20169 0.99967 0.70999 0.97652 1.21132 1.00582 0.91297 1.36248 0.93032 1.24674 0.95573 0.96931 0.96583 1.69935 1.31554 1.03378 1.49369 0.86758 0.84517 0.78968 0.78962 1.20351 1.21584 1.21511 1.17923 0.78263 0.85507 0.83112 1.90650 1.57405 1.14592 1.83398 1.21232 0.99704 0.90370 0.95014 1.21994 0.97712 1.01414 0.93037 1.21269 0.99549 0.94091 0.97773 1.21173 0.99827 0.94609 0.97745 1.20711 1.01061 1.00501 0.94262 1.23015 0.94573 1.00852 0.88137 1.68808 1.07705 1.08875 1.22878 0.95457 0.95081 0.90138 0.93973 0.93659 0.89987 0.89766 0.90080 0.95942 0.93610 0.84505 0.85253 0.91109 0.91150 0.91764 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.01 101.05 1.11 1.73 16 2 O -0.35 -7.25 8.29 -35.23 -0.29 -7.54 16 3 C 0.05 0.91 6.28 37.16 0.23 1.14 16 4 C 0.12 2.28 5.82 -4.04 -0.02 2.26 16 5 N -0.57 -12.68 2.44 -176.05 -0.43 -13.11 16 6 C 0.23 5.77 4.61 -5.19 -0.02 5.75 16 7 C -0.45 -12.12 6.39 -34.44 -0.22 -12.34 16 8 H 0.05 1.47 7.32 -52.49 -0.38 1.08 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 11 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.56 12.62 7.58 -12.18 -0.09 12.53 16 16 O -0.58 -13.23 15.95 5.35 0.09 -13.15 16 17 C 0.07 1.57 6.62 -83.01 -0.55 1.02 16 18 C -0.12 -2.10 9.63 -39.06 -0.38 -2.47 16 19 C -0.10 -1.47 9.85 -39.31 -0.39 -1.86 16 20 C -0.13 -1.96 5.91 -104.36 -0.62 -2.58 16 21 C -0.11 -1.18 10.03 36.01 0.36 -0.82 16 22 C 0.09 1.73 10.86 -17.57 -0.19 1.54 16 23 N -0.37 -8.12 4.99 -9.80 -0.05 -8.17 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.47 7.85 -51.93 -0.41 1.06 16 30 H 0.08 1.46 7.47 -51.93 -0.39 1.08 16 31 H 0.08 2.12 5.23 -52.36 -0.27 1.85 16 32 H 0.02 0.61 7.81 -51.93 -0.41 0.20 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.14 2.22 7.66 -52.49 -0.40 1.82 16 35 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.16 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -31.47 328.68 -6.51 -37.98 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.62 Total: -0.40 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.87 Total: 7.48 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.26 Total: -45.96 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.21 Total: -20.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.47 -6.51 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121774086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.014 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds