Wall clock time and date at job start Tue Mar 31 2020 00:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99685 * 2 1 4 4 C 1.52999 * 109.47032 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46737 * 65.00182 * 4 3 2 6 6 C 1.46506 * 119.99819 * 269.99719 * 5 4 3 7 7 C 1.50693 * 109.46741 * 97.41132 * 6 5 4 8 8 H 1.08000 * 120.00623 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99723 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00052 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00099 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47065 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46996 * 120.00102 * 11 9 7 14 14 H 1.48506 * 109.46858 * 239.99724 * 11 9 7 15 15 C 1.34769 * 120.00079 * 90.00102 * 5 4 3 16 16 O 1.21515 * 120.00046 * 356.68609 * 15 5 4 17 17 C 1.48172 * 120.00142 * 176.68716 * 15 5 4 18 18 C 1.39309 * 119.72713 * 186.65349 * 17 15 5 19 19 C 1.38583 * 119.06154 * 179.97438 * 18 17 15 20 20 C 1.38626 * 118.49008 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.32547 * 180.02562 * 20 19 18 22 22 C 1.38568 * 119.34996 * 0.02562 * 20 19 18 23 23 N 1.31516 * 120.89945 * 359.74271 * 22 20 19 24 24 H 1.08997 * 109.47663 * 299.99912 * 1 2 3 25 25 H 1.08996 * 109.47230 * 60.00434 * 1 2 3 26 26 H 1.09004 * 109.46871 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46933 * 59.99497 * 3 2 1 28 28 H 1.08996 * 109.47016 * 300.00134 * 3 2 1 29 29 H 1.08993 * 109.47043 * 305.00190 * 4 3 2 30 30 H 1.08998 * 109.47181 * 184.99660 * 4 3 2 31 31 H 1.09001 * 109.46823 * 217.41466 * 6 5 4 32 32 H 1.08999 * 109.46516 * 337.41194 * 6 5 4 33 33 H 0.97000 * 119.99984 * 180.02562 * 10 9 7 34 34 H 1.07999 * 120.46836 * 359.95266 * 18 17 15 35 35 H 1.08004 * 120.75617 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46848 * 89.99941 * 21 20 19 37 37 H 1.09000 * 109.47195 * 209.99847 * 21 20 19 38 38 H 1.08995 * 109.47229 * 330.00056 * 21 20 19 39 39 H 1.07995 * 119.54459 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1063 -0.8924 -1.3404 7 6 2.8654 -1.4693 -1.9714 8 1 2.0607 -0.8164 -2.2759 9 6 2.7572 -2.8309 -2.1601 10 7 3.7367 -3.6261 -1.7889 11 14 1.2192 -3.5460 -2.9430 12 1 0.2728 -2.4486 -3.2674 13 1 1.5871 -4.2673 -4.1878 14 1 0.5750 -4.4908 -1.9955 15 6 4.2632 1.3331 -2.3200 16 8 4.0983 2.5357 -2.2652 17 6 4.7794 0.7120 -3.5623 18 6 5.2047 1.5208 -4.6138 19 6 5.6856 0.9253 -5.7692 20 6 5.7249 -0.4589 -5.8326 21 6 6.2405 -1.1497 -7.0687 22 6 5.2854 -1.2012 -4.7481 23 7 4.8380 -0.6101 -3.6619 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6884 1.8465 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8507 0.5687 0.8426 30 1 3.9784 2.1767 0.0901 31 1 4.9743 -1.1432 -1.9501 32 1 4.2323 -1.3079 -0.3406 33 1 3.6607 -4.5839 -1.9220 34 1 5.1600 2.5966 -4.5300 35 1 6.0228 1.5261 -6.6009 36 1 7.3151 -1.3071 -6.9754 37 1 5.7409 -2.1117 -7.1825 38 1 6.0386 -0.5298 -7.9422 39 1 5.3143 -2.2798 -4.7943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121774086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:52 Heat of formation + Delta-G solvation = -40.200653 kcal Electronic energy + Delta-G solvation = -22584.452697 eV Core-core repulsion = 19299.665213 eV Total energy + Delta-G solvation = -3284.787484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59256 -40.01725 -38.53884 -36.62432 -34.53490 -34.27830 -32.71843 -31.29068 -28.86967 -28.30998 -26.98662 -25.01668 -24.40372 -24.27188 -22.83204 -20.67155 -18.57676 -18.24463 -17.79151 -17.13044 -16.86404 -16.39826 -16.28779 -16.14432 -15.96442 -15.44322 -15.38312 -14.75475 -14.41478 -14.22992 -14.01680 -13.53874 -13.40088 -13.19758 -13.08035 -12.98336 -12.81728 -12.66451 -12.62036 -12.38968 -12.04900 -11.82988 -11.38990 -11.10865 -10.67365 -10.43386 -10.33216 -9.84650 -9.60562 -9.24724 -7.89481 -5.86214 -0.16697 0.48636 1.39071 1.42377 1.51017 1.85897 2.30243 2.57509 3.03279 3.07169 3.43725 3.46783 3.87240 3.98850 4.10928 4.13125 4.19672 4.25672 4.38243 4.44888 4.52332 4.55546 4.64044 4.76485 4.85250 4.87211 4.89401 4.98365 5.11094 5.18222 5.23135 5.36806 5.64634 5.81774 6.01895 6.08266 6.43127 6.46035 6.62932 7.02203 7.17256 7.38533 7.71050 9.19982 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.008599 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.253917 B = 3255.498501 C = 4702.967339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.054 3.946 4 C 0.113 3.887 5 N -0.577 5.577 6 C 0.250 3.750 7 C -0.440 4.440 8 H 0.030 0.970 9 C 0.023 3.977 10 N -0.926 5.926 11 Si 0.928 3.072 12 H -0.283 1.283 13 H -0.283 1.283 14 H -0.286 1.286 15 C 0.558 3.442 16 O -0.591 6.591 17 C 0.035 3.965 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.106 4.106 22 C 0.068 3.932 23 N -0.414 5.414 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.073 0.927 32 H -0.004 1.004 33 H 0.255 0.745 34 H 0.147 0.853 35 H 0.178 0.822 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 7.264 -6.046 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.023 4.023 4 C -0.010 4.010 5 N -0.304 5.304 6 C 0.130 3.870 7 C -0.480 4.480 8 H 0.048 0.952 9 C -0.173 4.173 10 N -0.570 5.570 11 Si 0.756 3.244 12 H -0.208 1.208 13 H -0.209 1.209 14 H -0.212 1.212 15 C 0.347 3.653 16 O -0.474 6.474 17 C -0.102 4.102 18 C -0.138 4.138 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.163 4.163 22 C -0.091 4.091 23 N -0.124 5.124 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.014 0.986 33 H 0.064 0.936 34 H 0.165 0.835 35 H 0.195 0.805 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.497 7.017 -5.228 9.100 hybrid contribution -1.119 -0.143 -0.685 1.319 sum 1.379 6.874 -5.913 9.171 Atomic orbital electron populations 1.22720 0.81392 1.02400 0.99884 1.88232 1.19741 1.27124 1.95170 1.22849 0.94145 0.85305 1.00045 1.21660 0.93181 0.99626 0.86540 1.48248 1.61476 1.09835 1.10881 1.19747 0.99126 0.72586 0.95504 1.21005 1.00327 0.91032 1.35630 0.95172 1.25168 0.97660 0.97262 0.97256 1.70022 1.32863 1.03459 1.50621 0.85985 0.81833 0.78103 0.78454 1.20829 1.20902 1.21238 1.18294 0.77862 0.85499 0.83678 1.90610 1.58147 1.14835 1.83839 1.21190 1.02566 0.90723 0.95702 1.22201 0.96860 1.01687 0.93003 1.21771 0.97601 0.94194 0.97790 1.21557 0.96998 0.94925 0.97735 1.20828 1.01968 1.00660 0.92842 1.23120 0.95988 1.01033 0.88984 1.68494 1.09224 1.09687 1.25027 0.92067 0.95269 0.90559 0.90103 0.95482 0.89427 0.88175 0.90947 0.98558 0.93625 0.83510 0.80483 0.89167 0.90946 0.89050 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 11.01 113.37 1.25 2.35 16 2 O -0.38 -16.20 8.29 -148.98 -1.23 -17.44 16 3 C 0.05 1.99 6.28 71.98 0.45 2.44 16 4 C 0.11 4.32 5.82 86.38 0.50 4.82 16 5 N -0.58 -26.54 2.44 -829.20 -2.03 -28.57 16 6 C 0.25 13.04 4.61 85.63 0.39 13.44 16 7 C -0.44 -24.29 6.39 25.60 0.16 -24.13 16 8 H 0.03 1.77 7.32 -2.91 -0.02 1.75 16 9 C 0.02 1.27 5.46 84.66 0.46 1.74 16 10 N -0.93 -53.46 13.29 21.45 0.28 -53.17 16 11 Si 0.93 45.07 29.54 68.60 2.03 47.09 16 12 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 14 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 15 C 0.56 25.52 7.58 86.88 0.66 26.18 16 16 O -0.59 -27.28 15.95 -3.76 -0.06 -27.34 16 17 C 0.04 1.50 6.62 41.91 0.28 1.78 16 18 C -0.12 -3.88 9.63 22.61 0.22 -3.66 16 19 C -0.09 -2.26 9.85 22.44 0.22 -2.04 16 20 C -0.11 -3.00 5.91 -19.69 -0.12 -3.11 16 21 C -0.11 -1.88 10.03 71.24 0.71 -1.17 16 22 C 0.07 2.53 10.86 84.82 0.92 3.45 16 23 N -0.41 -18.46 4.99 -184.91 -0.92 -19.38 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 2.58 8.14 -2.38 -0.02 2.57 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 3.20 7.85 -2.39 -0.02 3.18 16 30 H 0.10 3.47 7.47 -2.39 -0.02 3.45 16 31 H 0.07 3.97 5.23 -3.24 -0.02 3.95 16 32 H 0.00 -0.20 7.81 -2.39 -0.02 -0.22 16 33 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.15 4.51 7.66 -2.91 -0.02 4.49 16 35 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 38 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.15 5.49 8.06 -2.91 -0.02 5.46 16 Total: -1.00 -70.20 328.68 5.22 -64.98 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.03 Total: 11.73 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 6.12 Total: 22.09 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -2.66 Total: -101.12 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.29 Total: -44.77 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.20 5.22 -64.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121774086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.783 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds