Wall clock time and date at job start Tue Mar 31 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21320 * 119.99959 * 2 1 4 4 C 1.46620 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.38618 * 126.51523 * 274.98698 * 4 2 1 6 6 C 1.50705 * 125.82741 * 359.95058 * 5 4 2 7 7 N 1.34111 * 108.34619 * 180.22170 * 5 4 2 8 8 H 0.96990 * 125.34823 * 179.75291 * 7 5 4 9 9 C 1.37844 * 109.30449 * 359.60098 * 7 5 4 10 10 C 1.46838 * 125.80201 * 180.16450 * 9 7 5 11 11 O 1.21671 * 120.00203 * 173.49283 * 10 9 7 12 12 N 1.34779 * 119.99883 * 353.48786 * 10 9 7 13 13 C 1.46494 * 120.00211 * 355.02431 * 12 10 9 14 14 C 1.46508 * 119.99621 * 175.02684 * 12 10 9 15 15 C 1.50699 * 109.47151 * 90.00133 * 14 12 10 16 16 H 1.08007 * 120.00116 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99949 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99582 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99911 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46967 * 90.00196 * 19 17 15 21 21 H 1.48500 * 109.47263 * 209.99692 * 19 17 15 22 22 H 1.48496 * 109.47407 * 330.00093 * 19 17 15 23 23 C 1.36242 * 108.39311 * 0.39954 * 9 7 5 24 24 C 1.50702 * 126.50674 * 179.76124 * 23 9 7 25 25 H 1.08994 * 109.47196 * 275.00121 * 1 2 3 26 26 H 1.09000 * 109.46816 * 35.00552 * 1 2 3 27 27 H 1.09009 * 109.46815 * 155.00068 * 1 2 3 28 28 H 1.08999 * 109.47016 * 84.98392 * 6 5 4 29 29 H 1.08998 * 109.46666 * 324.98538 * 6 5 4 30 30 H 1.09000 * 109.47114 * 204.98328 * 6 5 4 31 31 H 1.09002 * 109.46912 * 85.46793 * 13 12 10 32 32 H 1.09002 * 109.47269 * 205.47170 * 13 12 10 33 33 H 1.09006 * 109.47164 * 325.46878 * 13 12 10 34 34 H 1.09000 * 109.46283 * 209.99856 * 14 12 10 35 35 H 1.08993 * 109.46963 * 329.99932 * 14 12 10 36 36 H 0.97002 * 119.99763 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47395 * 270.00114 * 24 23 9 38 38 H 1.09007 * 109.46883 * 30.00441 * 24 23 9 39 39 H 1.09009 * 109.47210 * 149.99452 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2402 -1.2698 0.0006 5 6 2.5687 -2.0320 1.1108 6 6 2.2330 -1.6974 2.5413 7 7 3.2416 -3.1151 0.6951 8 1 3.5920 -3.8130 1.2703 9 6 3.3540 -3.0824 -0.6784 10 6 4.0202 -4.0927 -1.5100 11 8 3.9560 -4.0209 -2.7229 12 7 4.7029 -5.0995 -0.9298 13 6 4.8728 -5.1265 0.5250 14 6 5.2751 -6.1671 -1.7541 15 6 6.6754 -5.7897 -2.1635 16 1 7.0970 -4.8486 -1.8422 17 6 7.4186 -6.6459 -2.9482 18 7 6.9055 -7.7920 -3.3389 19 14 9.1541 -6.1778 -3.4563 20 1 10.1176 -6.6717 -2.4399 21 1 9.4665 -6.7897 -4.7729 22 1 9.2580 -4.7002 -3.5600 23 6 2.7465 -1.9506 -1.1326 24 6 2.6348 -1.5077 -2.5687 25 1 -0.3633 0.0896 1.0237 26 1 -0.3633 0.8418 -0.5895 27 1 -0.3633 -0.9315 -0.4343 28 1 1.2277 -2.0507 2.7708 29 1 2.2796 -0.6176 2.6823 30 1 2.9488 -2.1818 3.2054 31 1 4.0046 -5.6000 0.9835 32 1 5.7701 -5.6924 0.7756 33 1 4.9702 -4.1070 0.8984 34 1 5.3013 -7.0939 -1.1810 35 1 4.6617 -6.3073 -2.6440 36 1 7.4284 -8.3945 -3.8907 37 1 3.4946 -0.8892 -2.8262 38 1 2.6093 -2.3829 -3.2180 39 1 1.7195 -0.9306 -2.7009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123115916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:00 Heat of formation + Delta-G solvation = -17.924660 kcal Electronic energy + Delta-G solvation = -21760.915122 eV Core-core repulsion = 18477.093597 eV Total energy + Delta-G solvation = -3283.821524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.66680 -39.03808 -38.26479 -35.25685 -32.95377 -32.64420 -31.85549 -29.97404 -28.38991 -27.52651 -26.99858 -25.30686 -23.39630 -22.21352 -20.22454 -19.09458 -18.62683 -16.96631 -16.59140 -15.91755 -15.54952 -15.37627 -14.89232 -14.77539 -14.55504 -14.21201 -14.00968 -13.36291 -13.15880 -13.06461 -12.77029 -12.53090 -12.46077 -12.32554 -12.24005 -12.11638 -11.99637 -11.77641 -11.34958 -11.26613 -10.93263 -10.64180 -10.19489 -9.83978 -9.70591 -9.12322 -8.66786 -8.47973 -8.04939 -7.72258 -6.08957 -4.13836 1.71388 1.88478 2.44043 3.09915 3.28138 3.35422 3.40517 3.74978 3.92917 4.25165 4.42312 4.62281 4.86758 5.00606 5.04179 5.16309 5.21770 5.24211 5.26336 5.32431 5.44019 5.47533 5.59565 5.63422 5.85309 5.89874 5.92216 6.07275 6.23464 6.49216 6.69913 6.89903 7.05085 7.33039 7.35315 7.43765 7.49436 7.87003 8.16108 8.24171 8.81949 8.96389 9.51535 10.99150 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.004242 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.240453 B = 6598.976723 C = 6954.710195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.440 3.560 3 O -0.458 6.458 4 C -0.261 4.261 5 C 0.074 3.926 6 C -0.092 4.092 7 N -0.530 5.530 8 H 0.423 0.577 9 C -0.038 4.038 10 C 0.576 3.424 11 O -0.519 6.519 12 N -0.601 5.601 13 C 0.065 3.935 14 C 0.247 3.753 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.046 4.046 24 C -0.094 4.094 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 9.701 12.931 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.315 3.685 3 O -0.331 6.331 4 C -0.269 4.269 5 C -0.047 4.047 6 C -0.149 4.149 7 N -0.134 5.134 8 H 0.271 0.729 9 C -0.149 4.149 10 C 0.363 3.637 11 O -0.395 6.395 12 N -0.333 5.333 13 C -0.080 4.080 14 C 0.129 3.871 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.054 4.054 24 C -0.151 4.151 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.019 9.916 12.218 19.800 hybrid contribution 1.206 -0.317 0.168 1.259 sum -10.812 9.598 12.386 19.038 Atomic orbital electron populations 1.22253 0.94022 1.04808 1.04314 1.21700 0.91021 0.86656 0.69091 1.90546 1.72611 1.34564 1.35384 1.19800 1.13361 1.00447 0.93257 1.20585 0.99512 0.89249 0.95358 1.20455 1.02458 1.03147 0.88881 1.42863 1.43026 1.20053 1.07442 0.72930 1.20261 1.11721 1.01213 0.81737 1.17031 0.79172 0.80433 0.87062 1.90781 1.61801 1.74087 1.12800 1.48093 1.52996 1.25746 1.06458 1.21979 1.02331 1.00863 0.82788 1.19354 0.93787 0.83413 0.90561 1.21417 0.98569 1.04407 1.32284 0.92397 1.24925 0.98661 0.94859 0.95555 1.69925 1.37433 1.09672 1.36323 0.86482 0.84042 0.78848 0.77998 1.20661 1.20999 1.19809 1.19493 0.98226 0.92561 0.95097 1.20418 1.01045 1.02607 0.91032 0.88796 0.89656 0.89534 0.90069 0.90017 0.90973 0.93480 0.89248 0.92326 0.94793 0.93575 0.92647 0.91321 0.88966 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 10.26 36.01 0.37 -1.27 16 2 C 0.44 5.61 6.52 -30.93 -0.20 5.41 16 3 O -0.46 -7.33 17.86 5.52 0.10 -7.23 16 4 C -0.26 -3.67 5.77 -105.11 -0.61 -4.28 16 5 C 0.07 0.88 7.22 -81.45 -0.59 0.30 16 6 C -0.09 -0.69 10.20 36.01 0.37 -0.32 16 7 N -0.53 -6.97 4.98 -5.55 -0.03 -7.00 16 8 H 0.42 4.51 4.78 -40.82 -0.20 4.31 16 9 C -0.04 -0.66 6.60 -82.40 -0.54 -1.20 16 10 C 0.58 12.39 7.63 -12.78 -0.10 12.30 16 11 O -0.52 -13.05 14.29 5.21 0.07 -12.97 16 12 N -0.60 -12.59 2.86 -184.45 -0.53 -13.12 16 13 C 0.07 0.97 8.82 59.84 0.53 1.49 16 14 C 0.25 6.35 5.10 -5.19 -0.03 6.32 16 15 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 16 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.05 -0.78 6.21 -104.07 -0.65 -1.42 16 24 C -0.09 -1.52 9.71 36.01 0.35 -1.17 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.67 8.08 -51.92 -0.42 0.25 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.55 7.63 -51.93 -0.40 0.15 16 32 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16 33 H 0.06 0.76 5.34 -51.93 -0.28 0.48 16 34 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.05 1.33 7.49 -51.93 -0.39 0.94 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.66 6.29 -51.93 -0.33 1.33 16 39 H 0.06 0.75 8.05 -51.92 -0.42 0.33 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -35.12 331.70 -6.52 -41.64 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.34 Total: -0.24 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.52 Total: 2.62 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.18 Total: -45.65 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.12 -6.52 -41.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123115916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.713 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds