Wall clock time and date at job start Tue Mar 31 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21320 * 119.99959 * 2 1 4 4 C 1.46620 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.38618 * 126.51523 * 274.98698 * 4 2 1 6 6 C 1.50705 * 125.82741 * 359.95058 * 5 4 2 7 7 N 1.34111 * 108.34619 * 180.22170 * 5 4 2 8 8 H 0.96990 * 125.34823 * 179.75291 * 7 5 4 9 9 C 1.37844 * 109.30449 * 359.60098 * 7 5 4 10 10 C 1.46838 * 125.80201 * 180.16450 * 9 7 5 11 11 O 1.21671 * 120.00203 * 173.49283 * 10 9 7 12 12 N 1.34779 * 119.99883 * 353.48786 * 10 9 7 13 13 C 1.46494 * 120.00211 * 355.02431 * 12 10 9 14 14 C 1.46508 * 119.99621 * 175.02684 * 12 10 9 15 15 C 1.50699 * 109.47151 * 90.00133 * 14 12 10 16 16 H 1.08007 * 120.00116 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99949 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99582 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99911 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46967 * 90.00196 * 19 17 15 21 21 H 1.48500 * 109.47263 * 209.99692 * 19 17 15 22 22 H 1.48496 * 109.47407 * 330.00093 * 19 17 15 23 23 C 1.36242 * 108.39311 * 0.39954 * 9 7 5 24 24 C 1.50702 * 126.50674 * 179.76124 * 23 9 7 25 25 H 1.08994 * 109.47196 * 275.00121 * 1 2 3 26 26 H 1.09000 * 109.46816 * 35.00552 * 1 2 3 27 27 H 1.09009 * 109.46815 * 155.00068 * 1 2 3 28 28 H 1.08999 * 109.47016 * 84.98392 * 6 5 4 29 29 H 1.08998 * 109.46666 * 324.98538 * 6 5 4 30 30 H 1.09000 * 109.47114 * 204.98328 * 6 5 4 31 31 H 1.09002 * 109.46912 * 85.46793 * 13 12 10 32 32 H 1.09002 * 109.47269 * 205.47170 * 13 12 10 33 33 H 1.09006 * 109.47164 * 325.46878 * 13 12 10 34 34 H 1.09000 * 109.46283 * 209.99856 * 14 12 10 35 35 H 1.08993 * 109.46963 * 329.99932 * 14 12 10 36 36 H 0.97002 * 119.99763 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47395 * 270.00114 * 24 23 9 38 38 H 1.09007 * 109.46883 * 30.00441 * 24 23 9 39 39 H 1.09009 * 109.47210 * 149.99452 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2402 -1.2698 0.0006 5 6 2.5687 -2.0320 1.1108 6 6 2.2330 -1.6974 2.5413 7 7 3.2416 -3.1151 0.6951 8 1 3.5920 -3.8130 1.2703 9 6 3.3540 -3.0824 -0.6784 10 6 4.0202 -4.0927 -1.5100 11 8 3.9560 -4.0209 -2.7229 12 7 4.7029 -5.0995 -0.9298 13 6 4.8728 -5.1265 0.5250 14 6 5.2751 -6.1671 -1.7541 15 6 6.6754 -5.7897 -2.1635 16 1 7.0970 -4.8486 -1.8422 17 6 7.4186 -6.6459 -2.9482 18 7 6.9055 -7.7920 -3.3389 19 14 9.1541 -6.1778 -3.4563 20 1 10.1176 -6.6717 -2.4399 21 1 9.4665 -6.7897 -4.7729 22 1 9.2580 -4.7002 -3.5600 23 6 2.7465 -1.9506 -1.1326 24 6 2.6348 -1.5077 -2.5687 25 1 -0.3633 0.0896 1.0237 26 1 -0.3633 0.8418 -0.5895 27 1 -0.3633 -0.9315 -0.4343 28 1 1.2277 -2.0507 2.7708 29 1 2.2796 -0.6176 2.6823 30 1 2.9488 -2.1818 3.2054 31 1 4.0046 -5.6000 0.9835 32 1 5.7701 -5.6924 0.7756 33 1 4.9702 -4.1070 0.8984 34 1 5.3013 -7.0939 -1.1810 35 1 4.6617 -6.3073 -2.6440 36 1 7.4284 -8.3945 -3.8907 37 1 3.4946 -0.8892 -2.8262 38 1 2.6093 -2.3829 -3.2180 39 1 1.7195 -0.9306 -2.7009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123115916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:00 Heat of formation + Delta-G solvation = -41.626888 kcal Electronic energy + Delta-G solvation = -21761.942927 eV Core-core repulsion = 18477.093597 eV Total energy + Delta-G solvation = -3284.849330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.83885 -40.34795 -39.62037 -36.92754 -34.89300 -33.94623 -32.94876 -30.82366 -29.99706 -28.86074 -28.23072 -26.83991 -25.03185 -23.49354 -21.55276 -20.41441 -19.70415 -18.75740 -18.30786 -17.21708 -16.98679 -16.74110 -16.24280 -16.10405 -15.93308 -15.41101 -15.21177 -14.50113 -14.43872 -14.34265 -14.10534 -13.89341 -13.74239 -13.47016 -13.23554 -13.21731 -13.13484 -12.96883 -12.95223 -12.77852 -12.56243 -12.47203 -12.23469 -11.77444 -10.93730 -10.73194 -10.66428 -9.86725 -9.59122 -9.06519 -8.25674 -6.40219 0.45321 0.91251 1.31779 1.34292 1.37642 1.47963 1.96828 2.20110 2.39827 2.40259 3.04065 3.29677 3.66844 3.76946 3.96365 4.08425 4.14745 4.35425 4.39259 4.49948 4.63970 4.68021 4.72878 4.75279 4.79536 4.82391 4.92220 5.02784 5.08731 5.14915 5.17495 5.32325 5.47261 5.60686 5.72501 5.80126 6.01341 6.37563 6.55579 6.60119 6.67981 7.20640 7.35221 8.81183 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.004242 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.240453 B = 6598.976723 C = 6954.710195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.445 3.555 3 O -0.498 6.498 4 C -0.285 4.285 5 C 0.110 3.890 6 C -0.094 4.094 7 N -0.518 5.518 8 H 0.435 0.565 9 C -0.070 4.070 10 C 0.568 3.432 11 O -0.574 6.574 12 N -0.608 5.608 13 C 0.059 3.941 14 C 0.263 3.737 15 C -0.545 4.545 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.965 3.035 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.278 1.278 23 C -0.056 4.056 24 C -0.092 4.092 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.002 0.998 36 H 0.268 0.732 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 10.764 16.053 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.323 3.677 3 O -0.374 6.374 4 C -0.292 4.292 5 C -0.013 4.013 6 C -0.151 4.151 7 N -0.123 5.123 8 H 0.285 0.715 9 C -0.181 4.181 10 C 0.358 3.642 11 O -0.455 6.455 12 N -0.339 5.339 13 C -0.084 4.084 14 C 0.142 3.858 15 C -0.584 4.584 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.203 1.203 23 C -0.064 4.064 24 C -0.149 4.149 25 H 0.144 0.856 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.790 10.952 15.403 22.820 hybrid contribution 1.364 -0.616 -0.724 1.663 sum -11.426 10.336 14.678 21.280 Atomic orbital electron populations 1.22267 0.90215 1.05608 1.06501 1.22207 0.92856 0.85257 0.67377 1.90542 1.73768 1.35539 1.37567 1.20095 1.14624 1.01612 0.92919 1.21389 0.95720 0.87118 0.97112 1.20732 1.04883 1.03894 0.85576 1.42742 1.42897 1.20859 1.05774 0.71500 1.19551 1.14122 1.01022 0.83425 1.17604 0.78786 0.80829 0.86995 1.90735 1.63865 1.75548 1.15320 1.48046 1.52594 1.24583 1.08714 1.22298 1.04136 1.02798 0.79160 1.18828 0.92235 0.84940 0.89824 1.21659 0.99791 1.04073 1.32861 0.93378 1.25787 1.02841 0.94746 0.95347 1.70028 1.39058 1.10573 1.36785 0.85451 0.79325 0.78082 0.78167 1.18614 1.20397 1.20312 1.19715 0.97996 0.92841 0.95822 1.20356 1.01856 1.01621 0.91115 0.85646 0.88886 0.88691 0.86928 0.89459 0.88596 0.89556 0.89373 0.90117 0.94884 0.97994 0.92266 0.92378 0.91515 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 10.26 71.24 0.73 -1.76 16 2 C 0.44 10.34 6.52 27.88 0.18 10.52 16 3 O -0.50 -15.27 17.86 -3.15 -0.06 -15.32 16 4 C -0.29 -7.48 5.77 -20.18 -0.12 -7.60 16 5 C 0.11 2.24 7.22 42.30 0.31 2.54 16 6 C -0.09 -0.90 10.20 71.24 0.73 -0.18 16 7 N -0.52 -12.35 4.98 -171.47 -0.85 -13.20 16 8 H 0.44 7.81 4.78 -92.72 -0.44 7.37 16 9 C -0.07 -2.45 6.60 39.98 0.26 -2.19 16 10 C 0.57 25.54 7.63 86.49 0.66 26.20 16 11 O -0.57 -31.11 14.29 -4.26 -0.06 -31.17 16 12 N -0.61 -26.20 2.86 -855.70 -2.44 -28.64 16 13 C 0.06 1.66 8.82 127.77 1.13 2.79 16 14 C 0.26 14.12 5.10 85.63 0.44 14.55 16 15 C -0.55 -31.75 9.39 25.60 0.24 -31.50 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 17 C 0.01 0.71 5.46 84.66 0.46 1.17 16 18 N -0.92 -55.59 13.29 21.45 0.28 -55.30 16 19 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 23 C -0.06 -1.87 6.21 -19.51 -0.12 -1.99 16 24 C -0.09 -3.13 9.71 71.24 0.69 -2.44 16 25 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.13 8.08 -2.38 -0.02 1.11 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.87 8.06 -2.39 -0.02 0.85 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 1.78 7.63 -2.39 -0.02 1.76 16 32 H 0.09 2.54 8.04 -2.39 -0.02 2.52 16 33 H 0.08 1.91 5.34 -2.38 -0.01 1.90 16 34 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 35 H 0.00 0.12 7.49 -2.39 -0.02 0.10 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.60 6.29 -2.38 -0.01 2.58 16 39 H 0.08 2.23 8.05 -2.38 -0.02 2.21 16 Total: -1.00 -82.15 331.70 5.11 -77.03 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.63 Total: 9.09 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.59 Total: 10.12 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -3.01 Total: -97.14 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.12 Total: -46.49 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -82.15 5.11 -77.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123115916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.408 kcal (2) G-P(sol) polarization free energy of solvation -82.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds