Wall clock time and date at job start Mon Mar 30 2020 23:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35988 * 116.99998 * 2 1 4 4 C 1.38550 * 120.07710 * 0.02720 * 3 2 1 5 5 C 1.38248 * 120.00543 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.18396 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.92217 * 179.97438 * 6 5 4 8 8 C 1.38209 * 120.15917 * 359.75317 * 6 5 4 9 9 C 1.38715 * 119.98427 * 0.48136 * 8 6 5 10 10 N 1.40162 * 120.08944 * 179.79401 * 9 8 6 11 11 C 1.34777 * 120.00139 * 34.63335 * 10 9 8 12 12 O 1.21591 * 119.99937 * 355.55114 * 11 10 9 13 13 N 1.34770 * 120.00067 * 175.54422 * 11 10 9 14 14 C 1.46504 * 120.00024 * 180.27693 * 13 11 10 15 15 H 1.08997 * 109.47104 * 324.73074 * 14 13 11 16 16 C 1.52997 * 109.47059 * 84.72955 * 14 13 11 17 17 C 1.50706 * 109.47337 * 204.73007 * 14 13 11 18 18 H 1.08001 * 119.99582 * 359.97438 * 17 14 13 19 19 C 1.37872 * 119.99582 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00665 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99288 * 179.97438 * 19 17 14 22 22 H 1.48493 * 109.47328 * 60.00120 * 21 19 17 23 23 H 1.48501 * 109.46794 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47359 * 299.99526 * 21 19 17 25 25 H 1.09003 * 109.47251 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47022 * 299.99838 * 1 2 3 27 27 H 1.08996 * 109.47560 * 59.99449 * 1 2 3 28 28 H 1.07994 * 119.99477 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.90919 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.46909 * 90.00508 * 7 6 5 31 31 H 1.09000 * 109.46941 * 210.00130 * 7 6 5 32 32 H 1.09002 * 109.47095 * 330.00491 * 7 6 5 33 33 H 1.08000 * 120.01136 * 180.24907 * 8 6 5 34 34 H 0.97004 * 120.00195 * 214.63963 * 10 9 8 35 35 H 0.96999 * 120.00377 * 0.02562 * 13 11 10 36 36 H 1.08993 * 109.47561 * 180.02562 * 16 14 13 37 37 H 1.09001 * 109.47050 * 299.99923 * 16 14 13 38 38 H 1.09003 * 109.47486 * 59.99953 * 16 14 13 39 39 H 0.97006 * 120.00248 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3747 0.0006 5 6 1.9225 3.6057 0.0011 6 6 3.3032 3.6807 0.0005 7 6 3.9829 5.0257 0.0005 8 6 4.0614 2.5252 0.0046 9 6 3.4372 1.2864 -0.0009 10 7 4.2040 0.1132 -0.0011 11 6 5.3742 0.0727 0.6663 12 8 5.8042 1.0767 1.2008 13 7 6.0676 -1.0804 0.7414 14 6 7.3367 -1.1258 1.4721 15 1 7.8637 -0.1804 1.3440 16 6 7.0610 -1.3586 2.9589 17 6 8.1849 -2.2504 0.9364 18 1 7.8154 -2.8696 0.1323 19 6 9.4320 -2.4893 1.4734 20 7 9.8817 -1.7356 2.4528 21 14 10.4831 -3.8837 0.8098 22 1 10.7511 -3.6581 -0.6332 23 1 11.7695 -3.9296 1.5504 24 1 9.7647 -5.1715 0.9844 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2148 2.3195 0.0006 29 1 1.3340 4.5113 0.0020 30 1 4.1472 5.3497 1.0282 31 1 4.9408 4.9487 -0.5137 32 1 3.3522 5.7515 -0.5128 33 1 5.1396 2.5866 0.0082 34 1 3.8926 -0.6697 -0.4818 35 1 5.7248 -1.8813 0.3148 36 1 8.0050 -1.3920 3.5027 37 1 6.4475 -0.5452 3.3464 38 1 6.5339 -2.3041 3.0871 39 1 10.7593 -1.9035 2.8304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153434951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:21 Heat of formation + Delta-G solvation = -44.391117 kcal Electronic energy + Delta-G solvation = -21430.973161 eV Core-core repulsion = 18146.003965 eV Total energy + Delta-G solvation = -3284.969196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54307 -39.07931 -37.49855 -35.17025 -34.16314 -32.40044 -31.63217 -29.92985 -28.24087 -27.86262 -25.86215 -25.22190 -23.04293 -21.45004 -20.75922 -19.75111 -18.30407 -17.95704 -16.86318 -16.03101 -15.89261 -15.67483 -14.94067 -14.55046 -14.26191 -14.15945 -13.88458 -13.71423 -13.52781 -13.13480 -12.38269 -12.35123 -12.20757 -11.92965 -11.71947 -11.49788 -11.15526 -11.07530 -10.98271 -10.86990 -10.70793 -10.30928 -10.20421 -9.94551 -9.30665 -9.02182 -8.54364 -8.34455 -7.95743 -7.48284 -6.10132 -4.19266 1.46277 1.50106 3.16185 3.27342 3.30538 3.32704 3.37273 3.69804 4.07441 4.34512 4.79541 4.91838 4.95531 5.01886 5.04604 5.21928 5.24546 5.32775 5.42062 5.49928 5.73242 5.80333 6.01841 6.06389 6.26900 6.32564 6.66887 6.82955 6.85645 7.01741 7.03433 7.16721 7.28942 7.47601 7.52745 7.64950 7.87708 8.04738 8.18270 8.76680 8.89960 9.29896 9.49668 10.95887 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.003962 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.972916 B = 7065.843509 C = 7798.343458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.084 3.916 4 C -0.188 4.188 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.107 4.107 8 C -0.087 4.087 9 C 0.158 3.842 10 N -0.689 5.689 11 C 0.694 3.306 12 O -0.585 6.585 13 N -0.719 5.719 14 C 0.281 3.719 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.534 4.534 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.152 0.848 34 H 0.405 0.595 35 H 0.386 0.614 36 H 0.090 0.910 37 H 0.015 0.985 38 H 0.025 0.975 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.861 6.651 -6.141 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.037 3.963 4 C -0.208 4.208 5 C -0.128 4.128 6 C -0.105 4.105 7 C -0.164 4.164 8 C -0.108 4.108 9 C 0.062 3.938 10 N -0.337 5.337 11 C 0.394 3.606 12 O -0.463 6.463 13 N -0.370 5.370 14 C 0.179 3.821 15 H 0.067 0.933 16 C -0.207 4.207 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.239 0.761 35 H 0.218 0.782 36 H 0.109 0.891 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.087 7.307 -5.469 19.371 hybrid contribution -0.113 -1.503 -0.660 1.645 sum -17.200 5.804 -6.129 19.160 Atomic orbital electron populations 1.22988 0.78718 1.03633 1.01072 1.86039 1.21044 1.26664 1.89435 1.18773 0.90546 0.84794 1.02236 1.20916 0.99401 0.91823 1.08620 1.20694 0.93883 0.96719 1.01544 1.19738 0.93307 0.95378 1.02073 1.20700 1.00326 0.93080 1.02280 1.21220 1.01779 0.89231 0.98563 1.16870 0.86184 0.87063 1.03713 1.42639 1.21930 1.14069 1.55043 1.16143 0.79815 0.85238 0.79359 1.90851 1.69447 1.33874 1.52148 1.45844 1.25189 1.08809 1.57149 1.18671 0.77442 0.98280 0.87709 0.93256 1.22101 1.01884 0.97124 0.99552 1.21179 1.01205 1.15490 1.19361 0.92128 1.24870 0.97453 0.96539 0.94785 1.69896 1.18927 1.38523 1.24726 0.86494 0.79427 0.82080 0.78997 1.20191 1.21131 1.20186 0.88480 0.92853 0.92920 0.85545 0.86152 0.91314 0.91494 0.91969 0.83084 0.76053 0.78161 0.89128 0.96585 0.95550 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.11 10.06 -19.70 -0.20 -4.31 16 3 C 0.08 1.20 6.70 -39.08 -0.26 0.94 16 4 C -0.19 -2.27 9.04 -39.46 -0.36 -2.63 16 5 C -0.11 -1.31 9.69 -39.57 -0.38 -1.69 16 6 C -0.10 -1.43 5.88 -104.62 -0.62 -2.05 16 7 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 8 C -0.09 -1.47 8.35 -39.42 -0.33 -1.79 16 9 C 0.16 2.65 6.32 -83.48 -0.53 2.12 16 10 N -0.69 -11.85 5.20 -14.11 -0.07 -11.92 16 11 C 0.69 14.78 8.37 -86.92 -0.73 14.05 16 12 O -0.58 -14.44 13.43 5.29 0.07 -14.37 16 13 N -0.72 -15.51 5.07 -59.81 -0.30 -15.82 16 14 C 0.28 7.28 2.56 -69.08 -0.18 7.10 16 15 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 16 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 17 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 20 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 21 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 28 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 29 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.15 2.87 6.19 -52.49 -0.33 2.55 16 34 H 0.40 5.86 8.59 -40.82 -0.35 5.51 16 35 H 0.39 7.21 8.56 -40.82 -0.35 6.86 16 36 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -31.74 327.41 -7.40 -39.14 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.35 Total: 10.85 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.08 Total: 0.18 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.25 Total: -52.13 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.13 Total: -18.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.74 -7.40 -39.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153434951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.251 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds