Wall clock time and date at job start Mon Mar 30 2020 23:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35988 * 116.99998 * 2 1 4 4 C 1.38550 * 120.07710 * 0.02720 * 3 2 1 5 5 C 1.38248 * 120.00543 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.18396 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.92217 * 179.97438 * 6 5 4 8 8 C 1.38209 * 120.15917 * 359.75317 * 6 5 4 9 9 C 1.38715 * 119.98427 * 0.48136 * 8 6 5 10 10 N 1.40162 * 120.08944 * 179.79401 * 9 8 6 11 11 C 1.34777 * 120.00139 * 34.63335 * 10 9 8 12 12 O 1.21591 * 119.99937 * 355.55114 * 11 10 9 13 13 N 1.34770 * 120.00067 * 175.54422 * 11 10 9 14 14 C 1.46504 * 120.00024 * 180.27693 * 13 11 10 15 15 H 1.08997 * 109.47104 * 324.73074 * 14 13 11 16 16 C 1.52997 * 109.47059 * 84.72955 * 14 13 11 17 17 C 1.50706 * 109.47337 * 204.73007 * 14 13 11 18 18 H 1.08001 * 119.99582 * 359.97438 * 17 14 13 19 19 C 1.37872 * 119.99582 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00665 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99288 * 179.97438 * 19 17 14 22 22 H 1.48493 * 109.47328 * 60.00120 * 21 19 17 23 23 H 1.48501 * 109.46794 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47359 * 299.99526 * 21 19 17 25 25 H 1.09003 * 109.47251 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47022 * 299.99838 * 1 2 3 27 27 H 1.08996 * 109.47560 * 59.99449 * 1 2 3 28 28 H 1.07994 * 119.99477 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.90919 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.46909 * 90.00508 * 7 6 5 31 31 H 1.09000 * 109.46941 * 210.00130 * 7 6 5 32 32 H 1.09002 * 109.47095 * 330.00491 * 7 6 5 33 33 H 1.08000 * 120.01136 * 180.24907 * 8 6 5 34 34 H 0.97004 * 120.00195 * 214.63963 * 10 9 8 35 35 H 0.96999 * 120.00377 * 0.02562 * 13 11 10 36 36 H 1.08993 * 109.47561 * 180.02562 * 16 14 13 37 37 H 1.09001 * 109.47050 * 299.99923 * 16 14 13 38 38 H 1.09003 * 109.47486 * 59.99953 * 16 14 13 39 39 H 0.97006 * 120.00248 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3747 0.0006 5 6 1.9225 3.6057 0.0011 6 6 3.3032 3.6807 0.0005 7 6 3.9829 5.0257 0.0005 8 6 4.0614 2.5252 0.0046 9 6 3.4372 1.2864 -0.0009 10 7 4.2040 0.1132 -0.0011 11 6 5.3742 0.0727 0.6663 12 8 5.8042 1.0767 1.2008 13 7 6.0676 -1.0804 0.7414 14 6 7.3367 -1.1258 1.4721 15 1 7.8637 -0.1804 1.3440 16 6 7.0610 -1.3586 2.9589 17 6 8.1849 -2.2504 0.9364 18 1 7.8154 -2.8696 0.1323 19 6 9.4320 -2.4893 1.4734 20 7 9.8817 -1.7356 2.4528 21 14 10.4831 -3.8837 0.8098 22 1 10.7511 -3.6581 -0.6332 23 1 11.7695 -3.9296 1.5504 24 1 9.7647 -5.1715 0.9844 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2148 2.3195 0.0006 29 1 1.3340 4.5113 0.0020 30 1 4.1472 5.3497 1.0282 31 1 4.9408 4.9487 -0.5137 32 1 3.3522 5.7515 -0.5128 33 1 5.1396 2.5866 0.0082 34 1 3.8926 -0.6697 -0.4818 35 1 5.7248 -1.8813 0.3148 36 1 8.0050 -1.3920 3.5027 37 1 6.4475 -0.5452 3.3464 38 1 6.5339 -2.3041 3.0871 39 1 10.7593 -1.9035 2.8304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153434951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:20 Heat of formation + Delta-G solvation = -66.017887 kcal Electronic energy + Delta-G solvation = -21431.910968 eV Core-core repulsion = 18146.003965 eV Total energy + Delta-G solvation = -3285.907003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80138 -40.48636 -38.53987 -36.95024 -35.75493 -34.34993 -32.63596 -31.46231 -29.85507 -28.69252 -27.33898 -26.76331 -24.43451 -22.87463 -22.06896 -21.53096 -19.83523 -19.15410 -18.22939 -17.70751 -17.13691 -16.79161 -16.60993 -16.08888 -15.79624 -15.28364 -15.19032 -14.94468 -14.56950 -14.47405 -14.37301 -13.80198 -13.28036 -13.11408 -12.98701 -12.87691 -12.78773 -12.73338 -12.46104 -12.27422 -12.14857 -12.09342 -11.77287 -11.31262 -11.11602 -10.97622 -10.59894 -9.86660 -9.42768 -8.67330 -8.16967 -6.34691 0.34960 0.43453 1.45589 1.48279 1.55856 1.76726 2.17883 2.36041 2.43198 2.83709 3.13305 3.42526 3.90161 4.00220 4.18510 4.34678 4.46292 4.48125 4.49341 4.71828 4.78344 4.78679 4.86963 4.90478 4.94439 5.07766 5.10367 5.22688 5.31196 5.38941 5.55151 5.58764 5.64419 5.74861 5.83968 5.91362 6.08501 6.25355 6.48226 6.72324 7.21918 7.33990 7.67333 8.89475 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.003962 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.972916 B = 7065.843509 C = 7798.343458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.086 3.914 4 C -0.181 4.181 5 C -0.096 4.096 6 C -0.115 4.115 7 C -0.106 4.106 8 C -0.113 4.113 9 C 0.118 3.882 10 N -0.672 5.672 11 C 0.693 3.307 12 O -0.625 6.625 13 N -0.715 5.715 14 C 0.289 3.711 15 H 0.001 0.999 16 C -0.133 4.133 17 C -0.548 4.548 18 H 0.073 0.927 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.264 1.264 25 H 0.115 0.885 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.164 0.836 29 H 0.160 0.840 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.417 0.583 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.008 0.992 38 H 0.039 0.961 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.608 6.255 -7.228 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.038 3.962 4 C -0.200 4.200 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.163 4.163 8 C -0.134 4.134 9 C 0.023 3.977 10 N -0.321 5.321 11 C 0.393 3.607 12 O -0.506 6.506 13 N -0.367 5.367 14 C 0.185 3.815 15 H 0.018 0.982 16 C -0.192 4.192 17 C -0.586 4.586 18 H 0.092 0.908 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.799 3.201 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.189 1.189 25 H 0.134 0.866 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.182 0.818 29 H 0.177 0.823 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.254 0.746 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.910 6.897 -6.596 22.079 hybrid contribution 0.585 -1.287 -0.339 1.454 sum -19.324 5.610 -6.935 21.284 Atomic orbital electron populations 1.23346 0.76157 1.05482 1.02432 1.86020 1.23666 1.26132 1.89187 1.18825 0.89644 0.86256 1.01445 1.21373 1.01151 0.90833 1.06674 1.21148 0.93081 0.98339 0.98925 1.20040 0.94459 0.95231 1.01813 1.20745 1.00360 0.92553 1.02623 1.21091 1.00455 0.91005 1.00842 1.17147 0.87542 0.86433 1.06576 1.42299 1.20524 1.15105 1.54165 1.16241 0.80686 0.84388 0.79351 1.90827 1.70727 1.35161 1.53869 1.45459 1.24205 1.09787 1.57278 1.18267 0.78865 0.95916 0.88408 0.98159 1.21917 1.00680 0.97419 0.99186 1.21489 1.01723 1.15635 1.19801 0.90848 1.25798 0.98732 0.99042 0.94883 1.70048 1.19334 1.40192 1.25936 0.85355 0.77417 0.79005 0.78281 1.19604 1.21069 1.18864 0.86639 0.91820 0.91042 0.81812 0.82283 0.91241 0.92547 0.88889 0.86724 0.74582 0.76310 0.91214 0.97250 0.94207 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.98 10.06 -93.41 -0.94 -8.92 16 3 C 0.09 2.32 6.70 22.60 0.15 2.47 16 4 C -0.18 -3.74 9.04 22.35 0.20 -3.54 16 5 C -0.10 -1.99 9.69 22.28 0.22 -1.78 16 6 C -0.11 -3.07 5.88 -19.87 -0.12 -3.19 16 7 C -0.11 -2.28 10.01 71.23 0.71 -1.57 16 8 C -0.11 -3.97 8.35 22.38 0.19 -3.79 16 9 C 0.12 4.02 6.32 38.17 0.24 4.26 16 10 N -0.67 -23.80 5.20 -316.80 -1.65 -25.45 16 11 C 0.69 30.92 8.37 179.06 1.50 32.42 16 12 O -0.62 -32.99 13.43 -4.00 -0.05 -33.04 16 13 N -0.71 -31.82 5.07 -461.41 -2.34 -34.16 16 14 C 0.29 15.59 2.56 44.25 0.11 15.70 16 15 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 16 C -0.13 -7.04 9.26 71.98 0.67 -6.38 16 17 C -0.55 -29.63 8.73 25.60 0.22 -29.40 16 18 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 19 C 0.02 0.85 5.30 84.65 0.45 1.30 16 20 N -0.92 -53.25 11.32 21.44 0.24 -53.01 16 21 Si 0.98 42.39 29.54 68.60 2.03 44.41 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 0.72 7.66 -2.38 -0.02 0.70 16 27 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 28 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.30 8.09 -2.39 -0.02 1.29 16 32 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 33 H 0.11 4.81 6.19 -2.91 -0.02 4.79 16 34 H 0.42 12.17 8.59 -92.71 -0.80 11.37 16 35 H 0.40 15.09 8.56 -92.71 -0.79 14.30 16 36 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -72.25 327.41 2.44 -69.81 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.51 Total: 32.48 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.66 Total: 7.88 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -3.74 Total: -112.62 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.99 Total: -41.96 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -72.25 2.44 -69.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153434951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.795 kcal (2) G-P(sol) polarization free energy of solvation -72.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds