Wall clock time and date at job start Mon Mar 30 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35982 * 116.99572 * 2 1 4 4 C 1.38546 * 120.08365 * 359.97438 * 3 2 1 5 5 C 1.38248 * 120.01416 * 180.25062 * 4 3 2 6 6 C 1.38268 * 120.17468 * 359.45123 * 5 4 3 7 7 C 1.50704 * 119.91968 * 180.29643 * 6 5 4 8 8 C 1.38207 * 120.16488 * 0.55567 * 6 5 4 9 9 C 1.38713 * 119.98076 * 359.71845 * 8 6 5 10 10 N 1.40168 * 120.08509 * 179.97438 * 9 8 6 11 11 C 1.34780 * 120.00126 * 325.36492 * 10 9 8 12 12 O 1.21592 * 119.99654 * 4.45606 * 11 10 9 13 13 N 1.34774 * 119.99782 * 184.45300 * 11 10 9 14 14 C 1.46500 * 119.99680 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47397 * 35.00184 * 14 13 11 16 16 C 1.52998 * 109.47356 * 274.99878 * 14 13 11 17 17 C 1.50704 * 109.46895 * 155.00187 * 14 13 11 18 18 H 1.08003 * 120.00157 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99837 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00031 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 119.99830 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47249 * 89.99925 * 21 19 17 23 23 H 1.48504 * 109.47218 * 209.99934 * 21 19 17 24 24 H 1.48503 * 109.47283 * 329.99571 * 21 19 17 25 25 H 1.08998 * 109.47292 * 60.00381 * 1 2 3 26 26 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47523 * 300.00051 * 1 2 3 28 28 H 1.07999 * 119.99161 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.91040 * 179.70474 * 5 4 3 30 30 H 1.09002 * 109.46922 * 270.25498 * 7 6 5 31 31 H 1.09001 * 109.47192 * 30.25266 * 7 6 5 32 32 H 1.08994 * 109.47264 * 150.25484 * 7 6 5 33 33 H 1.07992 * 120.01071 * 179.74570 * 8 6 5 34 34 H 0.96996 * 119.99995 * 145.36505 * 10 9 8 35 35 H 0.96995 * 120.00164 * 0.02562 * 13 11 10 36 36 H 1.09004 * 109.47117 * 300.00477 * 16 14 13 37 37 H 1.09000 * 109.46804 * 59.99784 * 16 14 13 38 38 H 1.08993 * 109.47593 * 179.97438 * 16 14 13 39 39 H 0.96999 * 120.00114 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9223 3.6057 -0.0058 6 6 3.3030 3.6808 0.0010 7 6 3.9826 5.0258 0.0020 8 6 4.0613 2.5253 0.0014 9 6 3.4371 1.2866 0.0009 10 7 4.2040 0.1133 0.0008 11 6 5.3768 0.0749 -0.6623 12 8 5.8087 1.0804 -1.1922 13 7 6.0706 -1.0781 -0.7380 14 6 7.3450 -1.1200 -1.4593 15 1 7.8691 -0.1735 -1.3264 16 6 7.0810 -1.3520 -2.9483 17 6 8.1917 -2.2432 -0.9183 18 1 7.8180 -2.8636 -0.1170 19 6 9.4438 -2.4783 -1.4455 20 7 9.8990 -1.7227 -2.4209 21 14 10.4935 -3.8701 -0.7745 22 1 10.2120 -5.1138 -1.5357 23 1 11.9296 -3.5187 -0.9140 24 1 10.1735 -4.0844 0.6597 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2147 2.3195 -0.0014 29 1 1.3337 4.5112 -0.0110 30 1 4.1475 5.3503 -1.0255 31 1 3.3516 5.7514 0.5153 32 1 4.9403 4.9486 0.5167 33 1 5.1394 2.5869 0.0025 34 1 3.8908 -0.6709 0.4780 35 1 5.7258 -1.8802 -0.3155 36 1 6.5569 -2.2985 -3.0812 37 1 6.4686 -0.5396 -3.3396 38 1 8.0291 -1.3827 -3.4850 39 1 10.7801 -1.8878 -2.7915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153435059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:24 Heat of formation + Delta-G solvation = -44.469452 kcal Electronic energy + Delta-G solvation = -21430.341034 eV Core-core repulsion = 18145.368441 eV Total energy + Delta-G solvation = -3284.972593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54363 -39.08000 -37.49907 -35.17082 -34.16394 -32.40123 -31.63185 -29.93076 -28.24221 -27.86323 -25.86247 -25.22347 -23.04333 -21.45000 -20.75940 -19.75259 -18.30450 -17.95779 -16.86466 -16.03211 -15.89514 -15.67543 -14.94139 -14.55085 -14.26171 -14.15866 -13.88556 -13.71291 -13.52759 -13.13511 -12.38319 -12.35496 -12.20827 -11.92931 -11.72305 -11.49776 -11.15516 -11.08308 -10.98378 -10.86472 -10.70118 -10.30706 -10.20938 -9.94715 -9.30824 -9.01211 -8.55036 -8.34440 -7.95731 -7.48260 -6.10472 -4.19440 1.46349 1.50108 3.16139 3.25887 3.30602 3.33398 3.37831 3.69756 4.07455 4.34401 4.79501 4.91813 4.95467 5.01880 5.04579 5.21752 5.24506 5.32762 5.42105 5.49942 5.73274 5.80340 6.01887 6.06400 6.26904 6.32578 6.66897 6.82869 6.85627 7.01684 7.03390 7.16711 7.28819 7.47528 7.52663 7.65117 7.87557 8.04681 8.18106 8.76755 8.89870 9.29818 9.49530 10.95625 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.003962 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.895681 B = 7065.113523 C = 7797.701147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.084 3.916 4 C -0.188 4.188 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.107 4.107 8 C -0.087 4.087 9 C 0.159 3.841 10 N -0.689 5.689 11 C 0.694 3.306 12 O -0.585 6.585 13 N -0.719 5.719 14 C 0.280 3.720 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.152 0.848 34 H 0.405 0.595 35 H 0.386 0.614 36 H 0.025 0.975 37 H 0.015 0.985 38 H 0.090 0.910 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 6.622 6.078 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.036 3.964 4 C -0.208 4.208 5 C -0.128 4.128 6 C -0.105 4.105 7 C -0.164 4.164 8 C -0.108 4.108 9 C 0.062 3.938 10 N -0.337 5.337 11 C 0.394 3.606 12 O -0.463 6.463 13 N -0.370 5.370 14 C 0.179 3.821 15 H 0.068 0.932 16 C -0.206 4.206 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.239 0.761 35 H 0.218 0.782 36 H 0.045 0.955 37 H 0.034 0.966 38 H 0.109 0.891 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.132 7.281 5.417 19.387 hybrid contribution -0.110 -1.502 0.645 1.638 sum -17.242 5.779 6.063 19.168 Atomic orbital electron populations 1.22987 0.78717 1.03635 1.01073 1.86037 1.21046 1.26661 1.89438 1.18770 0.90541 0.84795 1.02259 1.20916 0.99401 0.91824 1.08613 1.20694 0.93885 0.96719 1.01551 1.19739 0.93305 0.95378 1.02062 1.20701 1.00327 0.93082 1.02279 1.21219 1.01771 0.89233 0.98581 1.16871 0.86186 0.87070 1.03692 1.42641 1.21720 1.13977 1.55337 1.16144 0.79824 0.85246 0.79341 1.90851 1.69454 1.33741 1.52268 1.45841 1.24840 1.08727 1.57578 1.18678 0.77299 0.98306 0.87859 0.93244 1.22100 1.01928 0.97128 0.99493 1.21219 1.00861 1.15486 1.19600 0.92077 1.24876 0.97465 0.96524 0.94820 1.69906 1.18592 1.38411 1.25157 0.86436 0.79446 0.81861 0.79264 1.20573 1.21069 1.19873 0.92861 0.88480 0.92911 0.85547 0.86150 0.91315 0.91971 0.91492 0.83087 0.76054 0.78157 0.95547 0.96587 0.89132 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.11 10.06 -19.69 -0.20 -4.31 16 3 C 0.08 1.19 6.70 -39.08 -0.26 0.93 16 4 C -0.19 -2.27 9.04 -39.46 -0.36 -2.62 16 5 C -0.11 -1.31 9.69 -39.57 -0.38 -1.69 16 6 C -0.10 -1.43 5.88 -104.62 -0.62 -2.05 16 7 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 8 C -0.09 -1.47 8.35 -39.42 -0.33 -1.80 16 9 C 0.16 2.65 6.32 -83.48 -0.53 2.12 16 10 N -0.69 -11.85 5.20 -14.10 -0.07 -11.92 16 11 C 0.69 14.78 8.38 -86.92 -0.73 14.05 16 12 O -0.58 -14.44 13.42 5.29 0.07 -14.36 16 13 N -0.72 -15.51 5.07 -59.81 -0.30 -15.81 16 14 C 0.28 7.27 2.56 -69.08 -0.18 7.09 16 15 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 16 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 17 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -25.01 11.32 55.43 0.63 -24.38 16 21 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 28 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.15 2.87 6.19 -52.49 -0.33 2.55 16 34 H 0.40 5.86 8.58 -40.82 -0.35 5.51 16 35 H 0.39 7.21 8.56 -40.82 -0.35 6.86 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -31.77 327.41 -7.40 -39.16 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.35 Total: 10.82 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.08 Total: 0.18 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.25 Total: -52.12 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.13 Total: -18.67 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.77 -7.40 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153435059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.308 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds