Wall clock time and date at job start Mon Mar 30 2020 23:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35982 * 116.99572 * 2 1 4 4 C 1.38546 * 120.08365 * 359.97438 * 3 2 1 5 5 C 1.38248 * 120.01416 * 180.25062 * 4 3 2 6 6 C 1.38268 * 120.17468 * 359.45123 * 5 4 3 7 7 C 1.50704 * 119.91968 * 180.29643 * 6 5 4 8 8 C 1.38207 * 120.16488 * 0.55567 * 6 5 4 9 9 C 1.38713 * 119.98076 * 359.71845 * 8 6 5 10 10 N 1.40168 * 120.08509 * 179.97438 * 9 8 6 11 11 C 1.34780 * 120.00126 * 325.36492 * 10 9 8 12 12 O 1.21592 * 119.99654 * 4.45606 * 11 10 9 13 13 N 1.34774 * 119.99782 * 184.45300 * 11 10 9 14 14 C 1.46500 * 119.99680 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47397 * 35.00184 * 14 13 11 16 16 C 1.52998 * 109.47356 * 274.99878 * 14 13 11 17 17 C 1.50704 * 109.46895 * 155.00187 * 14 13 11 18 18 H 1.08003 * 120.00157 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99837 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00031 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 119.99830 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47249 * 89.99925 * 21 19 17 23 23 H 1.48504 * 109.47218 * 209.99934 * 21 19 17 24 24 H 1.48503 * 109.47283 * 329.99571 * 21 19 17 25 25 H 1.08998 * 109.47292 * 60.00381 * 1 2 3 26 26 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47523 * 300.00051 * 1 2 3 28 28 H 1.07999 * 119.99161 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.91040 * 179.70474 * 5 4 3 30 30 H 1.09002 * 109.46922 * 270.25498 * 7 6 5 31 31 H 1.09001 * 109.47192 * 30.25266 * 7 6 5 32 32 H 1.08994 * 109.47264 * 150.25484 * 7 6 5 33 33 H 1.07992 * 120.01071 * 179.74570 * 8 6 5 34 34 H 0.96996 * 119.99995 * 145.36505 * 10 9 8 35 35 H 0.96995 * 120.00164 * 0.02562 * 13 11 10 36 36 H 1.09004 * 109.47117 * 300.00477 * 16 14 13 37 37 H 1.09000 * 109.46804 * 59.99784 * 16 14 13 38 38 H 1.08993 * 109.47593 * 179.97438 * 16 14 13 39 39 H 0.96999 * 120.00114 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9223 3.6057 -0.0058 6 6 3.3030 3.6808 0.0010 7 6 3.9826 5.0258 0.0020 8 6 4.0613 2.5253 0.0014 9 6 3.4371 1.2866 0.0009 10 7 4.2040 0.1133 0.0008 11 6 5.3768 0.0749 -0.6623 12 8 5.8087 1.0804 -1.1922 13 7 6.0706 -1.0781 -0.7380 14 6 7.3450 -1.1200 -1.4593 15 1 7.8691 -0.1735 -1.3264 16 6 7.0810 -1.3520 -2.9483 17 6 8.1917 -2.2432 -0.9183 18 1 7.8180 -2.8636 -0.1170 19 6 9.4438 -2.4783 -1.4455 20 7 9.8990 -1.7227 -2.4209 21 14 10.4935 -3.8701 -0.7745 22 1 10.2120 -5.1138 -1.5357 23 1 11.9296 -3.5187 -0.9140 24 1 10.1735 -4.0844 0.6597 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2147 2.3195 -0.0014 29 1 1.3337 4.5112 -0.0110 30 1 4.1475 5.3503 -1.0255 31 1 3.3516 5.7514 0.5153 32 1 4.9403 4.9486 0.5167 33 1 5.1394 2.5869 0.0025 34 1 3.8908 -0.6709 0.4780 35 1 5.7258 -1.8802 -0.3155 36 1 6.5569 -2.2985 -3.0812 37 1 6.4686 -0.5396 -3.3396 38 1 8.0291 -1.3827 -3.4850 39 1 10.7801 -1.8878 -2.7915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153435059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:23 Heat of formation + Delta-G solvation = -66.111800 kcal Electronic energy + Delta-G solvation = -21431.279517 eV Core-core repulsion = 18145.368441 eV Total energy + Delta-G solvation = -3285.911075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80150 -40.48678 -38.54022 -36.95090 -35.75525 -34.35084 -32.63563 -31.46332 -29.85575 -28.69273 -27.34092 -26.76355 -24.43464 -22.87467 -22.06926 -21.53186 -19.83540 -19.15470 -18.23234 -17.71041 -17.13641 -16.79230 -16.60973 -16.08938 -15.79486 -15.28361 -15.19042 -14.94443 -14.57001 -14.47394 -14.37616 -13.80671 -13.28039 -13.11423 -12.99781 -12.87985 -12.78523 -12.71702 -12.46013 -12.29281 -12.13948 -12.09329 -11.77432 -11.31367 -11.10250 -10.97730 -10.60855 -9.86604 -9.42753 -8.67274 -8.17329 -6.34877 0.35032 0.43471 1.45505 1.46650 1.57033 1.76791 2.17788 2.36058 2.42986 2.83748 3.13066 3.42473 3.90117 4.00245 4.18526 4.34719 4.46351 4.48135 4.49364 4.71781 4.78345 4.78711 4.86992 4.90504 4.94438 5.07751 5.10331 5.22680 5.31213 5.38887 5.55131 5.58854 5.64358 5.74899 5.83962 5.91361 6.08435 6.25270 6.48238 6.72417 7.21856 7.33828 7.67264 8.89365 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.003962 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.895681 B = 7065.113523 C = 7797.701147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.086 3.914 4 C -0.181 4.181 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.106 4.106 8 C -0.113 4.113 9 C 0.118 3.882 10 N -0.672 5.672 11 C 0.693 3.307 12 O -0.625 6.625 13 N -0.715 5.715 14 C 0.289 3.711 15 H 0.001 0.999 16 C -0.133 4.133 17 C -0.547 4.547 18 H 0.073 0.927 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.417 0.583 35 H 0.402 0.598 36 H 0.039 0.961 37 H 0.008 0.992 38 H 0.069 0.931 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.653 6.234 7.155 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.038 3.962 4 C -0.200 4.200 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.163 4.163 8 C -0.134 4.134 9 C 0.023 3.977 10 N -0.321 5.321 11 C 0.393 3.607 12 O -0.506 6.506 13 N -0.367 5.367 14 C 0.185 3.815 15 H 0.019 0.981 16 C -0.192 4.192 17 C -0.586 4.586 18 H 0.091 0.909 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.800 3.200 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.189 1.189 25 H 0.082 0.918 26 H 0.134 0.866 27 H 0.090 0.910 28 H 0.182 0.818 29 H 0.177 0.823 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.254 0.746 35 H 0.237 0.763 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.088 0.912 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.955 6.879 6.534 22.095 hybrid contribution 0.589 -1.291 0.325 1.455 sum -19.365 5.589 6.859 21.291 Atomic orbital electron populations 1.23345 0.76156 1.05484 1.02433 1.86019 1.23668 1.26126 1.89189 1.18821 0.89637 0.86258 1.01460 1.21372 1.01152 0.90832 1.06667 1.21147 0.93082 0.98341 0.98933 1.20040 0.94457 0.95231 1.01809 1.20746 1.00358 0.92556 1.02624 1.21089 1.00446 0.91006 1.00858 1.17149 0.87546 0.86441 1.06558 1.42301 1.20313 1.15014 1.54461 1.16242 0.80700 0.84396 0.79328 1.90827 1.70733 1.35028 1.53986 1.45457 1.23843 1.09705 1.57719 1.18273 0.78741 0.95936 0.88539 0.98137 1.21917 1.00716 0.97432 0.99132 1.21520 1.01382 1.15624 1.20024 0.90861 1.25802 0.98740 0.99010 0.94936 1.70055 1.19026 1.40089 1.26357 0.85297 0.77198 0.78577 0.78950 1.19599 1.21127 1.18879 0.91822 0.86638 0.91038 0.81812 0.82284 0.91237 0.88894 0.92552 0.86726 0.74587 0.76310 0.94199 0.97242 0.91221 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.97 10.06 -93.35 -0.94 -8.91 16 3 C 0.09 2.31 6.70 22.60 0.15 2.46 16 4 C -0.18 -3.74 9.04 22.35 0.20 -3.54 16 5 C -0.10 -2.00 9.69 22.28 0.22 -1.78 16 6 C -0.11 -3.07 5.88 -19.86 -0.12 -3.19 16 7 C -0.11 -2.28 10.01 71.24 0.71 -1.57 16 8 C -0.11 -3.98 8.35 22.38 0.19 -3.79 16 9 C 0.12 4.02 6.32 38.17 0.24 4.27 16 10 N -0.67 -23.81 5.20 -316.79 -1.65 -25.45 16 11 C 0.69 30.92 8.38 179.05 1.50 32.42 16 12 O -0.62 -32.97 13.42 -4.00 -0.05 -33.03 16 13 N -0.71 -31.81 5.07 -461.40 -2.34 -34.15 16 14 C 0.29 15.57 2.56 44.25 0.11 15.68 16 15 H 0.00 0.05 7.58 -2.38 -0.02 0.03 16 16 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 17 C -0.55 -29.58 8.73 25.60 0.22 -29.35 16 18 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 19 C 0.02 0.83 5.30 84.66 0.45 1.28 16 20 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 21 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 25 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 26 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 0.68 7.66 -2.39 -0.02 0.67 16 28 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 32 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.11 4.80 6.19 -2.91 -0.02 4.79 16 34 H 0.42 12.17 8.58 -92.71 -0.80 11.38 16 35 H 0.40 15.09 8.56 -92.71 -0.79 14.30 16 36 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 39 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -72.27 327.41 2.44 -69.83 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.51 Total: 32.38 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.66 Total: 7.88 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.75 Total: -112.61 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.99 Total: -41.94 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.27 2.44 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153435059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.721 kcal (2) G-P(sol) polarization free energy of solvation -72.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds