Wall clock time and date at job start Mon Mar 30 2020 23:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35990 * 116.99807 * 2 1 4 4 C 1.38541 * 120.07855 * 0.02890 * 3 2 1 5 5 C 1.38251 * 120.01157 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.91198 * 179.97438 * 5 4 3 7 7 C 1.38273 * 120.17570 * 359.96846 * 5 4 3 8 8 C 1.38200 * 120.15887 * 359.75291 * 7 5 4 9 9 C 1.38706 * 119.98972 * 0.52800 * 8 7 5 10 10 N 1.40170 * 120.09183 * 179.74811 * 9 8 7 11 11 C 1.34776 * 119.99874 * 325.35890 * 10 9 8 12 12 O 1.21595 * 120.00078 * 4.45253 * 11 10 9 13 13 N 1.34777 * 120.00146 * 184.45564 * 11 10 9 14 14 C 1.46498 * 120.00028 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46947 * 325.00138 * 14 13 11 16 16 C 1.52996 * 109.47339 * 85.00073 * 14 13 11 17 17 C 1.50699 * 109.47082 * 205.00108 * 14 13 11 18 18 H 1.07999 * 119.99999 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00266 * 180.02562 * 17 14 13 20 20 N 1.31526 * 119.99689 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 120.00332 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47188 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47271 * 120.00118 * 21 19 17 24 24 H 1.48504 * 109.47329 * 240.00039 * 21 19 17 25 25 H 1.08998 * 109.46918 * 299.99092 * 1 2 3 26 26 H 1.08996 * 109.47165 * 59.99904 * 1 2 3 27 27 H 1.08998 * 109.46858 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99524 * 359.97058 * 4 3 2 29 29 H 1.08998 * 109.47025 * 89.99524 * 6 5 4 30 30 H 1.08998 * 109.46691 * 209.99571 * 6 5 4 31 31 H 1.08997 * 109.46881 * 329.99294 * 6 5 4 32 32 H 1.07997 * 119.91867 * 180.02562 * 7 5 4 33 33 H 1.08010 * 120.00635 * 180.25574 * 8 7 5 34 34 H 0.96996 * 120.00265 * 145.63039 * 10 9 8 35 35 H 0.96996 * 119.99941 * 359.97438 * 13 11 10 36 36 H 1.08995 * 109.47628 * 180.02562 * 16 14 13 37 37 H 1.09005 * 109.47140 * 299.99890 * 16 14 13 38 38 H 1.08995 * 109.47088 * 59.99691 * 16 14 13 39 39 H 0.96998 * 119.99583 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3746 0.0006 5 6 1.9224 3.6057 0.0001 6 6 1.1011 4.8693 0.0001 7 6 3.3031 3.6808 -0.0004 8 6 4.0612 2.5253 0.0048 9 6 3.4372 1.2865 -0.0006 10 7 4.2040 0.1132 -0.0006 11 6 5.3790 0.0762 -0.6599 12 8 5.8128 1.0828 -1.1862 13 7 6.0731 -1.0766 -0.7358 14 6 7.3499 -1.1170 -1.4529 15 1 7.3057 -0.4471 -2.3116 16 6 8.4751 -0.6721 -0.5165 17 6 7.6163 -2.5229 -1.9257 18 1 6.9053 -3.3077 -1.7136 19 6 8.7676 -2.8072 -2.6290 20 7 9.6331 -1.8513 -2.8877 21 14 9.0974 -4.5497 -3.2157 22 1 7.9779 -5.4323 -2.7999 23 1 9.2129 -4.5601 -4.6961 24 1 10.3640 -5.0423 -2.6169 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2147 2.3194 0.0006 29 1 0.9035 5.1741 1.0278 30 1 1.6492 5.6588 -0.5140 31 1 0.1568 4.6888 -0.5133 32 1 3.7902 4.6447 -0.0004 33 1 5.1396 2.5868 0.0086 34 1 3.8873 -0.6732 0.4705 35 1 5.7272 -1.8795 -0.3157 36 1 9.4250 -0.7017 -1.0501 37 1 8.2824 0.3449 -0.1745 38 1 8.5193 -1.3419 0.3422 39 1 10.4433 -2.0515 -3.3821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157873155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:53 Heat of formation + Delta-G solvation = -44.552205 kcal Electronic energy + Delta-G solvation = -21348.139991 eV Core-core repulsion = 18063.163809 eV Total energy + Delta-G solvation = -3284.976181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54757 -39.09590 -37.45908 -35.25969 -34.21849 -32.48302 -31.20433 -30.04479 -28.71571 -27.78937 -25.80461 -25.20981 -22.58173 -21.88092 -20.83783 -19.75942 -18.19301 -17.82495 -17.03564 -16.05096 -15.88895 -15.62094 -15.05581 -14.60853 -14.33300 -14.00492 -13.79776 -13.69514 -13.60889 -13.25578 -12.48189 -12.36902 -12.25653 -12.03072 -11.71325 -11.44531 -11.20936 -11.08265 -11.01168 -10.90817 -10.72291 -10.27859 -10.21459 -9.86315 -9.29573 -9.01166 -8.53826 -8.44282 -7.96888 -7.44667 -6.10502 -4.19170 1.42906 1.53114 3.15888 3.25346 3.30632 3.34127 3.38689 3.69654 4.08716 4.34681 4.73951 4.92590 4.98010 4.99992 5.02475 5.12606 5.22398 5.33291 5.37553 5.50495 5.61795 5.67493 5.84472 6.02485 6.25819 6.37815 6.66786 6.80730 6.84279 7.00393 7.03033 7.16118 7.28701 7.47488 7.52742 7.65635 7.87846 8.04877 8.18206 8.77397 8.90274 9.30265 9.49817 10.95695 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028157 B = 0.003777 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.202032 B = 7410.745027 C = 8131.034597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.093 3.907 4 C -0.192 4.192 5 C -0.079 4.079 6 C -0.109 4.109 7 C -0.135 4.135 8 C -0.084 4.084 9 C 0.150 3.850 10 N -0.688 5.688 11 C 0.694 3.306 12 O -0.585 6.585 13 N -0.719 5.719 14 C 0.280 3.720 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.532 4.532 18 H 0.062 0.938 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.404 0.596 35 H 0.386 0.614 36 H 0.090 0.910 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.856 7.112 8.119 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.231 6.231 3 C 0.045 3.955 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.166 4.166 7 C -0.154 4.154 8 C -0.104 4.104 9 C 0.054 3.946 10 N -0.337 5.337 11 C 0.395 3.605 12 O -0.464 6.464 13 N -0.370 5.370 14 C 0.178 3.822 15 H 0.067 0.933 16 C -0.206 4.206 17 C -0.571 4.571 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.169 0.831 34 H 0.239 0.761 35 H 0.218 0.782 36 H 0.109 0.891 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.078 7.776 7.483 20.202 hybrid contribution -0.371 -1.649 0.047 1.691 sum -17.449 6.127 7.531 19.968 Atomic orbital electron populations 1.22992 0.78675 1.03667 1.01086 1.86047 1.21098 1.26622 1.89348 1.18757 0.90531 0.84739 1.01445 1.20793 0.99301 0.91307 1.09694 1.19605 0.93974 0.94303 1.00128 1.20730 0.99083 0.94767 1.01987 1.20860 0.92766 0.98275 1.03529 1.21312 1.01888 0.89647 0.97591 1.16888 0.86182 0.87146 1.04420 1.42633 1.21491 1.13831 1.55702 1.16145 0.79750 0.85294 0.79356 1.90850 1.69777 1.33582 1.52166 1.45840 1.24708 1.08590 1.57866 1.18682 0.76142 0.97177 0.90210 0.93263 1.22101 1.03219 0.96377 0.98949 1.21257 1.05871 0.93726 1.36208 0.92020 1.24885 0.95707 0.97603 0.95565 1.69923 1.10723 1.31875 1.39561 0.86377 0.78168 0.83950 0.78494 1.19759 1.20880 1.20890 0.92908 0.92831 0.88441 0.85582 0.91423 0.91506 0.91962 0.85813 0.83105 0.76096 0.78162 0.89113 0.96574 0.95524 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.13 10.05 -19.71 -0.20 -4.33 16 3 C 0.09 1.33 6.70 -39.08 -0.26 1.07 16 4 C -0.19 -2.34 8.69 -39.46 -0.34 -2.68 16 5 C -0.08 -0.95 5.88 -104.60 -0.62 -1.57 16 6 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 7 C -0.14 -1.85 9.69 -39.58 -0.38 -2.23 16 8 C -0.08 -1.39 8.70 -39.42 -0.34 -1.74 16 9 C 0.15 2.51 6.32 -83.48 -0.53 1.98 16 10 N -0.69 -11.84 5.20 -14.10 -0.07 -11.92 16 11 C 0.69 14.80 8.38 -86.92 -0.73 14.07 16 12 O -0.59 -14.47 13.42 5.28 0.07 -14.40 16 13 N -0.72 -15.54 5.07 -59.81 -0.30 -15.84 16 14 C 0.28 7.26 2.56 -69.09 -0.18 7.08 16 15 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 16 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 17 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 21 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.15 2.82 6.19 -52.48 -0.33 2.50 16 34 H 0.40 5.85 8.57 -40.82 -0.35 5.50 16 35 H 0.39 7.22 8.56 -40.82 -0.35 6.87 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -31.93 327.38 -7.40 -39.32 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.35 Total: 10.51 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.08 Total: 0.37 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.25 Total: -52.21 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.13 Total: -18.73 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.93 -7.40 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157873155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.229 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds