Wall clock time and date at job start Mon Mar 30 2020 23:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35990 * 116.99807 * 2 1 4 4 C 1.38541 * 120.07855 * 0.02890 * 3 2 1 5 5 C 1.38251 * 120.01157 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.91198 * 179.97438 * 5 4 3 7 7 C 1.38273 * 120.17570 * 359.96846 * 5 4 3 8 8 C 1.38200 * 120.15887 * 359.75291 * 7 5 4 9 9 C 1.38706 * 119.98972 * 0.52800 * 8 7 5 10 10 N 1.40170 * 120.09183 * 179.74811 * 9 8 7 11 11 C 1.34776 * 119.99874 * 325.35890 * 10 9 8 12 12 O 1.21595 * 120.00078 * 4.45253 * 11 10 9 13 13 N 1.34777 * 120.00146 * 184.45564 * 11 10 9 14 14 C 1.46498 * 120.00028 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46947 * 325.00138 * 14 13 11 16 16 C 1.52996 * 109.47339 * 85.00073 * 14 13 11 17 17 C 1.50699 * 109.47082 * 205.00108 * 14 13 11 18 18 H 1.07999 * 119.99999 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00266 * 180.02562 * 17 14 13 20 20 N 1.31526 * 119.99689 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 120.00332 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47188 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47271 * 120.00118 * 21 19 17 24 24 H 1.48504 * 109.47329 * 240.00039 * 21 19 17 25 25 H 1.08998 * 109.46918 * 299.99092 * 1 2 3 26 26 H 1.08996 * 109.47165 * 59.99904 * 1 2 3 27 27 H 1.08998 * 109.46858 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99524 * 359.97058 * 4 3 2 29 29 H 1.08998 * 109.47025 * 89.99524 * 6 5 4 30 30 H 1.08998 * 109.46691 * 209.99571 * 6 5 4 31 31 H 1.08997 * 109.46881 * 329.99294 * 6 5 4 32 32 H 1.07997 * 119.91867 * 180.02562 * 7 5 4 33 33 H 1.08010 * 120.00635 * 180.25574 * 8 7 5 34 34 H 0.96996 * 120.00265 * 145.63039 * 10 9 8 35 35 H 0.96996 * 119.99941 * 359.97438 * 13 11 10 36 36 H 1.08995 * 109.47628 * 180.02562 * 16 14 13 37 37 H 1.09005 * 109.47140 * 299.99890 * 16 14 13 38 38 H 1.08995 * 109.47088 * 59.99691 * 16 14 13 39 39 H 0.96998 * 119.99583 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3746 0.0006 5 6 1.9224 3.6057 0.0001 6 6 1.1011 4.8693 0.0001 7 6 3.3031 3.6808 -0.0004 8 6 4.0612 2.5253 0.0048 9 6 3.4372 1.2865 -0.0006 10 7 4.2040 0.1132 -0.0006 11 6 5.3790 0.0762 -0.6599 12 8 5.8128 1.0828 -1.1862 13 7 6.0731 -1.0766 -0.7358 14 6 7.3499 -1.1170 -1.4529 15 1 7.3057 -0.4471 -2.3116 16 6 8.4751 -0.6721 -0.5165 17 6 7.6163 -2.5229 -1.9257 18 1 6.9053 -3.3077 -1.7136 19 6 8.7676 -2.8072 -2.6290 20 7 9.6331 -1.8513 -2.8877 21 14 9.0974 -4.5497 -3.2157 22 1 7.9779 -5.4323 -2.7999 23 1 9.2129 -4.5601 -4.6961 24 1 10.3640 -5.0423 -2.6169 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2147 2.3194 0.0006 29 1 0.9035 5.1741 1.0278 30 1 1.6492 5.6588 -0.5140 31 1 0.1568 4.6888 -0.5133 32 1 3.7902 4.6447 -0.0004 33 1 5.1396 2.5868 0.0086 34 1 3.8873 -0.6732 0.4705 35 1 5.7272 -1.8795 -0.3157 36 1 9.4250 -0.7017 -1.0501 37 1 8.2824 0.3449 -0.1745 38 1 8.5193 -1.3419 0.3422 39 1 10.4433 -2.0515 -3.3821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157873155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:52 Heat of formation + Delta-G solvation = -66.295470 kcal Electronic energy + Delta-G solvation = -21349.082849 eV Core-core repulsion = 18063.163809 eV Total energy + Delta-G solvation = -3285.919040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80216 -40.51605 -38.49068 -36.99126 -35.81969 -34.39234 -32.46334 -31.08892 -30.51115 -28.56370 -27.35585 -26.80134 -23.92017 -23.17046 -22.22844 -21.52404 -19.81844 -19.10398 -18.16767 -17.79322 -17.02709 -16.91877 -16.62140 -16.20070 -15.83449 -15.22665 -15.10048 -14.85298 -14.67844 -14.43045 -14.37920 -13.76891 -13.32988 -13.07840 -12.97733 -12.91287 -12.85923 -12.72448 -12.38522 -12.28157 -12.14318 -12.10195 -11.86700 -11.26171 -11.09068 -10.93302 -10.60740 -9.85072 -9.49954 -8.66379 -8.17832 -6.35071 0.31550 0.45193 1.44978 1.45281 1.57715 1.77092 2.18095 2.33702 2.42515 2.83471 3.12669 3.43644 3.86784 3.96550 4.22040 4.34473 4.40346 4.44794 4.54661 4.73891 4.75700 4.80088 4.88837 4.91760 4.93768 5.08613 5.10272 5.20840 5.33735 5.40800 5.58586 5.62847 5.65032 5.68789 5.84345 5.89880 6.09134 6.25752 6.46483 6.72582 7.22379 7.33607 7.67685 8.89110 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028157 B = 0.003777 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.202032 B = 7410.745027 C = 8131.034597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.097 3.903 4 C -0.189 4.189 5 C -0.068 4.068 6 C -0.108 4.108 7 C -0.146 4.146 8 C -0.105 4.105 9 C 0.108 3.892 10 N -0.671 5.671 11 C 0.693 3.307 12 O -0.625 6.625 13 N -0.715 5.715 14 C 0.288 3.712 15 H -0.001 1.001 16 C -0.133 4.133 17 C -0.547 4.547 18 H 0.073 0.927 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.976 3.024 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.277 1.277 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.162 0.838 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.417 0.583 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.011 0.989 38 H 0.040 0.960 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.805 6.549 8.773 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.049 3.951 4 C -0.208 4.208 5 C -0.069 4.069 6 C -0.164 4.164 7 C -0.164 4.164 8 C -0.126 4.126 9 C 0.013 3.987 10 N -0.320 5.320 11 C 0.394 3.606 12 O -0.507 6.507 13 N -0.367 5.367 14 C 0.185 3.815 15 H 0.017 0.983 16 C -0.192 4.192 17 C -0.585 4.585 18 H 0.091 0.909 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.800 3.200 22 H -0.184 1.184 23 H -0.209 1.209 24 H -0.203 1.203 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.179 0.821 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.136 0.864 34 H 0.254 0.746 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.101 7.202 8.184 22.867 hybrid contribution 0.392 -1.367 -0.131 1.428 sum -19.709 5.835 8.053 22.076 Atomic orbital electron populations 1.23351 0.76123 1.05533 1.02424 1.86028 1.23719 1.26086 1.89068 1.18803 0.89683 0.86121 1.00454 1.21211 1.00935 0.90393 1.08214 1.20071 0.93459 0.96050 0.97333 1.20823 0.99232 0.92869 1.03500 1.21077 0.93844 0.97860 1.03656 1.21177 1.00692 0.91250 0.99464 1.17143 0.87482 0.86563 1.07507 1.42283 1.20079 1.14853 1.54810 1.16241 0.80665 0.84442 0.79302 1.90824 1.71062 1.34891 1.53881 1.45456 1.23804 1.09555 1.57924 1.18277 0.78049 0.96062 0.89152 0.98311 1.21916 1.01965 0.96455 0.98899 1.21553 1.06345 0.94041 1.36539 0.90908 1.25814 0.95404 1.01873 0.95513 1.70068 1.11196 1.34154 1.40099 0.85246 0.78371 0.78764 0.77621 1.18442 1.20920 1.20280 0.91015 0.91874 0.86543 0.82094 0.89627 0.90841 0.90097 0.84287 0.86406 0.74610 0.76315 0.91268 0.96954 0.94085 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.08 10.05 -93.43 -0.94 -9.01 16 3 C 0.10 2.65 6.70 22.59 0.15 2.81 16 4 C -0.19 -4.05 8.69 22.35 0.19 -3.85 16 5 C -0.07 -1.47 5.88 -19.85 -0.12 -1.59 16 6 C -0.11 -1.43 10.01 71.24 0.71 -0.71 16 7 C -0.15 -3.93 9.69 22.27 0.22 -3.72 16 8 C -0.11 -3.66 8.70 22.37 0.19 -3.47 16 9 C 0.11 3.68 6.32 38.17 0.24 3.92 16 10 N -0.67 -23.73 5.20 -316.79 -1.65 -25.38 16 11 C 0.69 30.87 8.38 179.05 1.50 32.37 16 12 O -0.63 -32.96 13.42 -4.02 -0.05 -33.01 16 13 N -0.71 -31.80 5.07 -461.41 -2.34 -34.14 16 14 C 0.29 15.54 2.56 44.24 0.11 15.65 16 15 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 16 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 17 C -0.55 -29.65 8.73 25.60 0.22 -29.42 16 18 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 19 C 0.01 0.76 5.30 84.65 0.45 1.21 16 20 N -0.92 -53.31 11.32 21.45 0.24 -53.07 16 21 Si 0.98 42.58 29.54 68.60 2.03 44.61 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 25 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 26 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 27 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.16 2.27 6.30 -2.91 -0.02 2.26 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.12 4.83 6.19 -2.91 -0.02 4.81 16 34 H 0.42 12.13 8.57 -92.71 -0.79 11.34 16 35 H 0.40 15.09 8.56 -92.71 -0.79 14.30 16 36 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 37 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -72.17 327.38 2.44 -69.74 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.51 Total: 32.01 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.66 Total: 8.26 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.75 Total: -112.59 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.99 Total: -42.02 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -72.17 2.44 -69.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157873155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.440 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds