Wall clock time and date at job start Mon Mar 30 2020 23:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35980 * 116.99745 * 2 1 4 4 C 1.38537 * 120.08241 * 0.02562 * 3 2 1 5 5 C 1.38254 * 120.01221 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.91305 * 179.97438 * 5 4 3 7 7 C 1.38267 * 120.17921 * 359.68312 * 5 4 3 8 8 C 1.38215 * 120.15793 * 0.59648 * 7 5 4 9 9 C 1.38711 * 119.98127 * 359.42577 * 8 7 5 10 10 N 1.40168 * 120.08469 * 180.25360 * 9 8 7 11 11 C 1.34773 * 119.99937 * 325.36613 * 10 9 8 12 12 O 1.21589 * 120.00264 * 4.44665 * 11 10 9 13 13 N 1.34777 * 119.99866 * 184.45804 * 11 10 9 14 14 C 1.46504 * 120.00054 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.46976 * 34.99510 * 14 13 11 16 16 C 1.52993 * 109.46879 * 274.99330 * 14 13 11 17 17 C 1.50703 * 109.47200 * 154.99362 * 14 13 11 18 18 H 1.08000 * 119.99918 * 0.02562 * 17 14 13 19 19 C 1.37872 * 119.99990 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00207 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00121 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.46986 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47258 * 119.99784 * 21 19 17 24 24 H 1.48494 * 109.47535 * 239.99989 * 21 19 17 25 25 H 1.08990 * 109.47005 * 60.00522 * 1 2 3 26 26 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47224 * 300.00257 * 1 2 3 28 28 H 1.07999 * 119.99525 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.47199 * 89.99835 * 6 5 4 30 30 H 1.08996 * 109.47316 * 210.00548 * 6 5 4 31 31 H 1.09007 * 109.46725 * 330.00557 * 6 5 4 32 32 H 1.07997 * 119.92570 * 180.29898 * 7 5 4 33 33 H 1.07992 * 120.00785 * 179.69926 * 8 7 5 34 34 H 0.97003 * 120.00107 * 145.35521 * 10 9 8 35 35 H 0.97001 * 120.00055 * 359.97438 * 13 11 10 36 36 H 1.09006 * 109.47089 * 179.97438 * 16 14 13 37 37 H 1.09003 * 109.47464 * 299.99881 * 16 14 13 38 38 H 1.09000 * 109.47344 * 59.99974 * 16 14 13 39 39 H 0.97003 * 120.00182 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3745 0.0005 5 6 1.9225 3.6057 0.0000 6 6 1.1013 4.8693 0.0000 7 6 3.3031 3.6807 0.0055 8 6 4.0614 2.5251 -0.0008 9 6 3.4371 1.2864 -0.0007 10 7 4.2040 0.1132 -0.0018 11 6 5.3760 0.0747 -0.6661 12 8 5.8074 1.0802 -1.1965 13 7 6.0697 -1.0783 -0.7427 14 6 7.3434 -1.1202 -1.4654 15 1 7.8676 -0.1737 -1.3329 16 6 7.0777 -1.3521 -2.9541 17 6 8.1906 -2.2435 -0.9254 18 1 7.8174 -2.8644 -0.1243 19 6 9.4416 -2.4793 -1.4547 20 7 9.8959 -1.7236 -2.4305 21 14 10.4915 -3.8721 -0.7858 22 1 9.7568 -4.5678 0.3010 23 1 10.7895 -4.8350 -1.8763 24 1 11.7625 -3.3212 -0.2509 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2148 2.3194 0.0005 29 1 0.9036 5.1742 1.0277 30 1 1.6493 5.6588 -0.5143 31 1 0.1568 4.6888 -0.5134 32 1 3.7903 4.6446 0.0100 33 1 5.1396 2.5866 -0.0014 34 1 3.8913 -0.6711 0.4758 35 1 5.7256 -1.8804 -0.3194 36 1 8.0253 -1.3828 -3.4919 37 1 6.5534 -2.2985 -3.0866 38 1 6.4649 -0.5396 -3.3447 39 1 10.7763 -1.8892 -2.8026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157873304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:56 Heat of formation + Delta-G solvation = -44.561860 kcal Electronic energy + Delta-G solvation = -21348.511992 eV Core-core repulsion = 18063.535392 eV Total energy + Delta-G solvation = -3284.976600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54962 -39.09759 -37.46228 -35.25868 -34.21831 -32.48459 -31.20346 -30.04720 -28.71360 -27.79480 -25.80518 -25.20732 -22.57354 -21.88732 -20.85096 -19.74408 -18.19592 -17.82348 -17.04480 -16.03324 -15.92077 -15.64484 -15.02390 -14.59370 -14.29953 -14.03165 -13.79604 -13.72743 -13.67744 -13.16491 -12.48674 -12.36155 -12.29421 -12.02303 -11.71908 -11.44555 -11.21406 -11.06787 -11.02258 -10.91880 -10.69925 -10.28460 -10.21276 -9.85445 -9.29827 -9.00586 -8.55037 -8.43537 -7.96989 -7.45036 -6.10554 -4.19441 1.42726 1.52945 3.15650 3.25176 3.30591 3.33992 3.38397 3.69758 4.08162 4.34474 4.73617 4.92317 4.97936 4.99869 5.01660 5.12519 5.22098 5.32584 5.37342 5.50389 5.61591 5.67293 5.84449 6.02513 6.25889 6.37849 6.66677 6.81108 6.84760 7.01684 7.03443 7.17064 7.29146 7.47351 7.52856 7.65455 7.87815 8.04990 8.18245 8.77194 8.90255 9.30289 9.49683 10.95560 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.003675 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.374118 B = 7617.490090 C = 8148.594905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.093 3.907 4 C -0.192 4.192 5 C -0.079 4.079 6 C -0.109 4.109 7 C -0.136 4.136 8 C -0.083 4.083 9 C 0.150 3.850 10 N -0.689 5.689 11 C 0.694 3.306 12 O -0.586 6.586 13 N -0.719 5.719 14 C 0.280 3.720 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.532 4.532 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.404 0.596 35 H 0.386 0.614 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.015 0.985 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.971 6.576 6.157 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.231 6.231 3 C 0.045 3.955 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.166 4.166 7 C -0.155 4.155 8 C -0.104 4.104 9 C 0.053 3.947 10 N -0.337 5.337 11 C 0.395 3.605 12 O -0.464 6.464 13 N -0.370 5.370 14 C 0.178 3.822 15 H 0.068 0.932 16 C -0.207 4.207 17 C -0.571 4.571 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.169 0.831 34 H 0.239 0.761 35 H 0.218 0.782 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.210 7.231 5.493 20.349 hybrid contribution -0.025 -1.481 0.654 1.619 sum -18.235 5.750 6.147 20.084 Atomic orbital electron populations 1.22991 0.78689 1.03652 1.01092 1.86044 1.21083 1.26635 1.89354 1.18754 0.90524 0.84728 1.01452 1.20789 0.99292 0.91309 1.09730 1.19606 0.93974 0.94302 1.00107 1.20732 0.99073 0.94769 1.01997 1.20868 0.92766 0.98289 1.03529 1.21324 1.01921 0.89655 0.97493 1.16890 0.86176 0.87140 1.04461 1.42629 1.21764 1.14001 1.55277 1.16142 0.79838 0.85234 0.79335 1.90848 1.69482 1.33761 1.52293 1.45845 1.24921 1.08736 1.57511 1.18680 0.77334 0.98314 0.87844 0.93243 1.22101 1.01929 0.97130 0.99502 1.21258 1.00884 1.15425 1.19530 0.92017 1.24882 0.97494 0.96556 0.94810 1.69919 1.18557 1.38471 1.25112 0.86379 0.80163 0.81663 0.78790 1.19761 1.20902 1.20877 0.92838 0.88451 0.92904 0.85588 0.91418 0.91504 0.91966 0.85803 0.83068 0.76085 0.78161 0.89121 0.95545 0.96582 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.09 10.06 -19.68 -0.20 -4.29 16 3 C 0.09 1.32 6.70 -39.08 -0.26 1.06 16 4 C -0.19 -2.33 8.69 -39.46 -0.34 -2.67 16 5 C -0.08 -0.95 5.88 -104.60 -0.62 -1.56 16 6 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 7 C -0.14 -1.86 9.69 -39.58 -0.38 -2.24 16 8 C -0.08 -1.39 8.70 -39.42 -0.34 -1.73 16 9 C 0.15 2.50 6.32 -83.48 -0.53 1.97 16 10 N -0.69 -11.84 5.20 -14.10 -0.07 -11.91 16 11 C 0.69 14.79 8.38 -86.92 -0.73 14.07 16 12 O -0.59 -14.47 13.42 5.29 0.07 -14.40 16 13 N -0.72 -15.54 5.07 -59.81 -0.30 -15.84 16 14 C 0.28 7.27 2.56 -69.08 -0.18 7.09 16 15 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 16 C -0.15 -3.78 9.26 37.15 0.34 -3.44 16 17 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -25.04 11.32 55.43 0.63 -24.42 16 21 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 28 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.06 0.46 8.08 -51.92 -0.42 0.04 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.15 2.85 6.19 -52.49 -0.33 2.52 16 34 H 0.40 5.86 8.58 -40.82 -0.35 5.51 16 35 H 0.39 7.22 8.56 -40.82 -0.35 6.87 16 36 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -31.87 327.40 -7.40 -39.26 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -5.35 Total: 10.58 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.08 Total: 0.36 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.25 Total: -52.17 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.13 Total: -18.69 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.87 -7.40 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157873304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.301 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds