Wall clock time and date at job start Mon Mar 30 2020 23:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35980 * 116.99745 * 2 1 4 4 C 1.38537 * 120.08241 * 0.02562 * 3 2 1 5 5 C 1.38254 * 120.01221 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.91305 * 179.97438 * 5 4 3 7 7 C 1.38267 * 120.17921 * 359.68312 * 5 4 3 8 8 C 1.38215 * 120.15793 * 0.59648 * 7 5 4 9 9 C 1.38711 * 119.98127 * 359.42577 * 8 7 5 10 10 N 1.40168 * 120.08469 * 180.25360 * 9 8 7 11 11 C 1.34773 * 119.99937 * 325.36613 * 10 9 8 12 12 O 1.21589 * 120.00264 * 4.44665 * 11 10 9 13 13 N 1.34777 * 119.99866 * 184.45804 * 11 10 9 14 14 C 1.46504 * 120.00054 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.46976 * 34.99510 * 14 13 11 16 16 C 1.52993 * 109.46879 * 274.99330 * 14 13 11 17 17 C 1.50703 * 109.47200 * 154.99362 * 14 13 11 18 18 H 1.08000 * 119.99918 * 0.02562 * 17 14 13 19 19 C 1.37872 * 119.99990 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00207 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00121 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.46986 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47258 * 119.99784 * 21 19 17 24 24 H 1.48494 * 109.47535 * 239.99989 * 21 19 17 25 25 H 1.08990 * 109.47005 * 60.00522 * 1 2 3 26 26 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47224 * 300.00257 * 1 2 3 28 28 H 1.07999 * 119.99525 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.47199 * 89.99835 * 6 5 4 30 30 H 1.08996 * 109.47316 * 210.00548 * 6 5 4 31 31 H 1.09007 * 109.46725 * 330.00557 * 6 5 4 32 32 H 1.07997 * 119.92570 * 180.29898 * 7 5 4 33 33 H 1.07992 * 120.00785 * 179.69926 * 8 7 5 34 34 H 0.97003 * 120.00107 * 145.35521 * 10 9 8 35 35 H 0.97001 * 120.00055 * 359.97438 * 13 11 10 36 36 H 1.09006 * 109.47089 * 179.97438 * 16 14 13 37 37 H 1.09003 * 109.47464 * 299.99881 * 16 14 13 38 38 H 1.09000 * 109.47344 * 59.99974 * 16 14 13 39 39 H 0.97003 * 120.00182 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3745 0.0005 5 6 1.9225 3.6057 0.0000 6 6 1.1013 4.8693 0.0000 7 6 3.3031 3.6807 0.0055 8 6 4.0614 2.5251 -0.0008 9 6 3.4371 1.2864 -0.0007 10 7 4.2040 0.1132 -0.0018 11 6 5.3760 0.0747 -0.6661 12 8 5.8074 1.0802 -1.1965 13 7 6.0697 -1.0783 -0.7427 14 6 7.3434 -1.1202 -1.4654 15 1 7.8676 -0.1737 -1.3329 16 6 7.0777 -1.3521 -2.9541 17 6 8.1906 -2.2435 -0.9254 18 1 7.8174 -2.8644 -0.1243 19 6 9.4416 -2.4793 -1.4547 20 7 9.8959 -1.7236 -2.4305 21 14 10.4915 -3.8721 -0.7858 22 1 9.7568 -4.5678 0.3010 23 1 10.7895 -4.8350 -1.8763 24 1 11.7625 -3.3212 -0.2509 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2148 2.3194 0.0005 29 1 0.9036 5.1742 1.0277 30 1 1.6493 5.6588 -0.5143 31 1 0.1568 4.6888 -0.5134 32 1 3.7903 4.6446 0.0100 33 1 5.1396 2.5866 -0.0014 34 1 3.8913 -0.6711 0.4758 35 1 5.7256 -1.8804 -0.3194 36 1 8.0253 -1.3828 -3.4919 37 1 6.5534 -2.2985 -3.0866 38 1 6.4649 -0.5396 -3.3447 39 1 10.7763 -1.8892 -2.8026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157873304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:55 Heat of formation + Delta-G solvation = -66.249730 kcal Electronic energy + Delta-G solvation = -21349.452449 eV Core-core repulsion = 18063.535392 eV Total energy + Delta-G solvation = -3285.917056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80247 -40.51623 -38.49058 -36.99217 -35.81986 -34.39242 -32.46226 -31.09067 -30.51427 -28.56150 -27.35898 -26.80043 -23.90940 -23.18508 -22.23782 -21.51032 -19.82032 -19.10074 -18.17665 -17.79222 -17.08189 -16.86925 -16.61598 -16.09578 -15.92776 -15.28066 -15.05936 -14.90358 -14.59537 -14.43367 -14.37566 -13.81408 -13.32344 -13.07310 -12.99512 -12.89788 -12.85669 -12.73331 -12.38233 -12.28463 -12.14006 -12.10338 -11.86173 -11.26216 -11.09326 -10.92703 -10.61467 -9.84475 -9.50554 -8.66702 -8.17528 -6.34991 0.31397 0.45101 1.45338 1.45595 1.58069 1.77464 2.17748 2.33743 2.42740 2.83125 3.12886 3.43666 3.86814 3.96613 4.22058 4.34350 4.40598 4.45071 4.54543 4.73232 4.75675 4.80266 4.88910 4.91666 4.92786 5.07575 5.10889 5.21100 5.33505 5.40153 5.58622 5.62887 5.64496 5.68634 5.83946 5.89819 6.08602 6.25682 6.46566 6.72693 7.22386 7.33777 7.67742 8.89328 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.003675 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.374118 B = 7617.490090 C = 8148.594905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.098 3.902 4 C -0.188 4.188 5 C -0.068 4.068 6 C -0.108 4.108 7 C -0.146 4.146 8 C -0.106 4.106 9 C 0.108 3.892 10 N -0.671 5.671 11 C 0.693 3.307 12 O -0.626 6.626 13 N -0.715 5.715 14 C 0.288 3.712 15 H 0.001 0.999 16 C -0.133 4.133 17 C -0.546 4.546 18 H 0.074 0.926 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.976 3.024 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.283 1.283 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.417 0.583 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.009 0.991 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.732 6.090 7.223 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.050 3.950 4 C -0.207 4.207 5 C -0.069 4.069 6 C -0.164 4.164 7 C -0.165 4.165 8 C -0.126 4.126 9 C 0.013 3.987 10 N -0.320 5.320 11 C 0.393 3.607 12 O -0.507 6.507 13 N -0.367 5.367 14 C 0.185 3.815 15 H 0.019 0.981 16 C -0.192 4.192 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.800 3.200 22 H -0.184 1.184 23 H -0.204 1.204 24 H -0.209 1.209 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.089 0.911 28 H 0.179 0.821 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.135 0.865 34 H 0.254 0.746 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.049 6.733 6.599 23.063 hybrid contribution 0.673 -1.226 0.339 1.439 sum -20.376 5.506 6.938 22.218 Atomic orbital electron populations 1.23354 0.76119 1.05543 1.02426 1.86027 1.23713 1.26051 1.89054 1.18791 0.89641 0.86129 1.00404 1.21210 1.00943 0.90377 1.08210 1.20070 0.93428 0.96074 0.97307 1.20826 0.99242 0.92866 1.03495 1.21076 0.93864 0.97834 1.03687 1.21178 1.00660 0.91322 0.99466 1.17137 0.87494 0.86517 1.07542 1.42281 1.20349 1.15016 1.54391 1.16239 0.80716 0.84384 0.79320 1.90824 1.70767 1.35054 1.54024 1.45459 1.23922 1.09715 1.57650 1.18275 0.78772 0.95943 0.88523 0.98122 1.21919 1.00722 0.97446 0.99144 1.21554 1.01400 1.15560 1.19938 0.90832 1.25812 0.98781 0.99060 0.94937 1.70064 1.19031 1.40143 1.26305 0.85242 0.78033 0.78320 0.78384 1.18411 1.20361 1.20891 0.91831 0.86518 0.91067 0.82059 0.89653 0.90850 0.90052 0.84329 0.86515 0.74600 0.76309 0.91211 0.94181 0.97236 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.95 10.06 -93.33 -0.94 -8.89 16 3 C 0.10 2.66 6.70 22.59 0.15 2.81 16 4 C -0.19 -4.02 8.69 22.35 0.19 -3.82 16 5 C -0.07 -1.46 5.88 -19.85 -0.12 -1.58 16 6 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 7 C -0.15 -3.95 9.69 22.27 0.22 -3.74 16 8 C -0.11 -3.70 8.70 22.38 0.19 -3.50 16 9 C 0.11 3.68 6.32 38.17 0.24 3.92 16 10 N -0.67 -23.74 5.20 -316.80 -1.65 -25.39 16 11 C 0.69 30.89 8.38 179.06 1.50 32.39 16 12 O -0.63 -33.00 13.42 -4.00 -0.05 -33.05 16 13 N -0.72 -31.81 5.07 -461.41 -2.34 -34.15 16 14 C 0.29 15.55 2.56 44.24 0.11 15.67 16 15 H 0.00 0.05 7.58 -2.39 -0.02 0.04 16 16 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 17 C -0.55 -29.54 8.73 25.60 0.22 -29.32 16 18 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 19 C 0.01 0.77 5.30 84.65 0.45 1.22 16 20 N -0.92 -53.29 11.32 21.45 0.24 -53.04 16 21 Si 0.98 42.48 29.54 68.60 2.03 44.51 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 26 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 0.69 7.66 -2.39 -0.02 0.68 16 28 H 0.16 2.25 6.30 -2.91 -0.02 2.23 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 31 H 0.08 0.81 8.08 -2.38 -0.02 0.79 16 32 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.12 4.84 6.19 -2.91 -0.02 4.82 16 34 H 0.42 12.14 8.58 -92.71 -0.80 11.34 16 35 H 0.40 15.09 8.56 -92.71 -0.79 14.29 16 36 H 0.07 3.98 6.07 -2.38 -0.01 3.97 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -72.10 327.40 2.44 -69.66 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.51 Total: 32.03 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.66 Total: 8.32 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.75 Total: -112.58 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.99 Total: -41.94 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -72.10 2.44 -69.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157873304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.415 kcal (2) G-P(sol) polarization free energy of solvation -72.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds