Wall clock time and date at job start Mon Mar 30 2020 23:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35977 * 117.00144 * 2 1 4 4 C 1.38744 * 119.98425 * 0.30225 * 3 2 1 5 5 C 1.38071 * 120.00894 * 180.29862 * 4 3 2 6 6 C 1.38851 * 119.99111 * 359.42285 * 5 4 3 7 7 N 1.40150 * 120.01412 * 180.29839 * 6 5 4 8 8 C 1.34775 * 120.00096 * 325.28292 * 7 6 5 9 9 O 1.21586 * 120.00036 * 4.49697 * 8 7 6 10 10 N 1.34778 * 119.99926 * 184.49873 * 8 7 6 11 11 C 1.46495 * 120.00305 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46877 * 34.99947 * 11 10 8 13 13 C 1.53005 * 109.47237 * 275.00255 * 11 10 8 14 14 C 1.50700 * 109.47478 * 155.00115 * 11 10 8 15 15 H 1.08000 * 119.99541 * 0.02562 * 14 11 10 16 16 C 1.37869 * 120.00063 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00294 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99984 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47019 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47450 * 120.00010 * 18 16 14 21 21 H 1.48501 * 109.47048 * 240.00090 * 18 16 14 22 22 C 1.38817 * 119.97054 * 0.28214 * 6 5 4 23 23 C 1.50699 * 120.00778 * 180.02562 * 22 6 5 24 24 C 1.38120 * 119.98154 * 359.97438 * 22 6 5 25 25 H 1.08992 * 109.47166 * 59.99394 * 1 2 3 26 26 H 1.08994 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46484 * 299.99529 * 1 2 3 28 28 H 1.08000 * 119.99185 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.00035 * 179.70241 * 5 4 3 30 30 H 0.96999 * 119.99316 * 145.28173 * 7 6 5 31 31 H 0.97010 * 119.99867 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.47136 * 299.99960 * 13 11 10 33 33 H 1.08999 * 109.46774 * 59.99836 * 13 11 10 34 34 H 1.08999 * 109.47328 * 179.97438 * 13 11 10 35 35 H 0.96999 * 120.00445 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.47104 * 89.99472 * 23 22 6 37 37 H 1.08995 * 109.46871 * 209.99563 * 23 22 6 38 38 H 1.08999 * 109.46806 * 329.99844 * 23 22 6 39 39 H 1.08003 * 119.98783 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2905 2.3750 0.0063 5 6 1.9168 3.6054 0.0001 6 6 3.3034 3.6785 -0.0004 7 7 3.9396 4.9273 -0.0004 8 6 3.3904 5.9634 -0.6647 9 8 2.3036 5.8380 -1.1953 10 7 4.0460 7.1385 -0.7410 11 6 3.4494 8.2646 -1.4636 12 1 2.3675 8.2489 -1.3313 13 6 3.7829 8.1495 -2.9524 14 6 4.0028 9.5580 -0.9234 15 1 4.7269 9.5427 -0.1222 16 6 3.5848 10.7608 -1.4519 17 7 2.7034 10.7794 -2.4278 18 14 4.2714 12.3641 -0.7828 19 1 5.2401 12.0723 0.3042 20 1 4.9578 13.1021 -1.8733 21 1 3.1615 13.1924 -0.2468 22 6 4.0591 2.5141 -0.0005 23 6 5.5641 2.5924 -0.0005 24 6 3.4314 1.2838 0.0003 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 0.2120 2.3180 0.0117 29 1 1.3281 4.5110 0.0002 30 1 4.7751 5.0458 0.4778 31 1 4.9133 7.2384 -0.3180 32 1 4.8647 8.1651 -3.0847 33 1 3.3825 7.2140 -3.3431 34 1 3.3386 8.9871 -3.4901 35 1 2.4090 11.6257 -2.7995 36 1 5.9269 2.6113 1.0271 37 1 5.9731 1.7226 -0.5144 38 1 5.8806 3.5002 -0.5142 39 1 4.0193 0.3778 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159275027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:30 Heat of formation + Delta-G solvation = -43.993967 kcal Electronic energy + Delta-G solvation = -21247.325621 eV Core-core repulsion = 17962.373647 eV Total energy + Delta-G solvation = -3284.951974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49240 -39.34777 -37.54872 -34.95308 -33.93134 -32.44923 -32.33905 -29.78022 -28.59157 -26.86504 -26.59273 -25.25851 -23.02194 -21.49446 -20.74772 -19.82487 -18.24017 -17.69994 -17.30282 -16.15374 -15.87207 -15.72289 -15.01577 -14.67439 -14.17381 -14.10423 -13.99071 -13.60818 -13.33470 -13.03905 -12.71805 -12.39875 -12.24574 -12.01978 -11.90984 -11.73072 -11.24396 -11.10263 -10.98564 -10.81552 -10.72215 -10.31273 -10.25011 -9.66590 -9.32554 -9.04701 -8.68831 -8.57907 -8.00953 -7.42357 -6.14038 -4.23229 1.38623 1.56609 3.18770 3.22712 3.29191 3.31562 3.35275 3.66393 4.03527 4.31269 4.81210 4.90203 4.97174 5.04068 5.06380 5.14692 5.18740 5.34258 5.36586 5.46823 5.55050 5.74777 5.85065 6.10534 6.18614 6.51698 6.52307 6.64837 6.80539 6.97907 7.07855 7.12794 7.25465 7.45603 7.47315 7.61455 7.83054 7.99942 8.14326 8.72522 8.84969 9.24736 9.45703 10.92063 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034033 B = 0.003454 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.536582 B = 8105.308250 C = 8549.220697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.101 3.899 4 C -0.192 4.192 5 C -0.078 4.078 6 C 0.144 3.856 7 N -0.693 5.693 8 C 0.693 3.307 9 O -0.584 6.584 10 N -0.719 5.719 11 C 0.280 3.720 12 H 0.049 0.951 13 C -0.148 4.148 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.085 4.085 23 C -0.112 4.112 24 C -0.136 4.136 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.148 0.852 30 H 0.401 0.599 31 H 0.386 0.614 32 H 0.026 0.974 33 H 0.015 0.985 34 H 0.090 0.910 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -17.705 6.122 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.056 3.944 4 C -0.212 4.212 5 C -0.098 4.098 6 C 0.048 3.952 7 N -0.342 5.342 8 C 0.393 3.607 9 O -0.462 6.462 10 N -0.370 5.370 11 C 0.178 3.822 12 H 0.067 0.933 13 C -0.207 4.207 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.088 4.088 23 C -0.169 4.169 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.165 0.835 30 H 0.236 0.764 31 H 0.218 0.782 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.813 -17.725 5.457 18.564 hybrid contribution 0.848 1.173 0.654 1.588 sum 1.661 -16.553 6.111 17.723 Atomic orbital electron populations 1.23003 0.78753 1.03471 1.01448 1.86027 1.21082 1.27145 1.89377 1.18908 0.92202 0.83992 0.99278 1.21131 0.99919 0.91811 1.08308 1.21237 0.93387 0.98330 0.96885 1.17284 0.91466 0.83774 1.02629 1.42784 1.27550 1.08497 1.55356 1.16170 0.84538 0.80577 0.79412 1.90855 1.20730 1.82426 1.52193 1.45858 1.22478 1.11174 1.57535 1.18679 0.94948 0.80683 0.87841 0.93284 1.22103 0.98823 1.00261 0.99486 1.21246 1.26157 0.90194 1.19583 0.92021 1.24882 0.94835 0.99211 0.94794 1.69913 1.30577 1.26457 1.25081 0.86381 0.78820 0.83004 0.78799 1.19755 1.20866 1.20874 1.19418 0.95876 0.91056 1.02422 1.20713 0.90716 1.03193 1.02267 1.19939 0.91147 0.97213 1.07181 0.92672 0.88600 0.92784 0.85503 0.83470 0.76402 0.78203 0.95521 0.96588 0.89116 0.92595 0.91092 0.91170 0.91319 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.94 10.50 -19.67 -0.21 -4.15 16 3 C 0.10 1.37 6.69 -39.23 -0.26 1.11 16 4 C -0.19 -2.72 9.03 -39.46 -0.36 -3.07 16 5 C -0.08 -1.29 8.69 -39.42 -0.34 -1.63 16 6 C 0.14 2.25 6.29 -83.61 -0.53 1.73 16 7 N -0.69 -10.84 4.76 -14.19 -0.07 -10.91 16 8 C 0.69 14.09 8.38 -86.92 -0.73 13.36 16 9 O -0.58 -14.09 13.42 5.29 0.07 -14.02 16 10 N -0.72 -14.88 5.07 -59.81 -0.30 -15.18 16 11 C 0.28 7.11 2.56 -69.08 -0.18 6.93 16 12 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 13 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 14 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -24.75 11.32 55.43 0.63 -24.12 16 18 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.08 -1.10 5.89 -104.45 -0.62 -1.72 16 23 C -0.11 -1.10 9.47 36.01 0.34 -0.76 16 24 C -0.14 -1.74 9.63 -39.46 -0.38 -2.12 16 25 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.42 7.65 -51.92 -0.40 0.02 16 28 H 0.13 1.52 6.29 -52.49 -0.33 1.19 16 29 H 0.15 2.76 6.19 -52.48 -0.33 2.43 16 30 H 0.40 4.89 7.86 -40.82 -0.32 4.57 16 31 H 0.39 6.78 8.56 -40.82 -0.35 6.43 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.07 0.69 7.16 -51.93 -0.37 0.32 16 39 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -31.63 325.46 -7.38 -39.01 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.28 Total: 9.94 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.11 Total: -0.92 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.26 Total: -50.21 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.14 Total: -18.17 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.63 -7.38 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159275027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.986 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds