Wall clock time and date at job start Mon Mar 30 2020 23:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35977 * 117.00144 * 2 1 4 4 C 1.38744 * 119.98425 * 0.30225 * 3 2 1 5 5 C 1.38071 * 120.00894 * 180.29862 * 4 3 2 6 6 C 1.38851 * 119.99111 * 359.42285 * 5 4 3 7 7 N 1.40150 * 120.01412 * 180.29839 * 6 5 4 8 8 C 1.34775 * 120.00096 * 325.28292 * 7 6 5 9 9 O 1.21586 * 120.00036 * 4.49697 * 8 7 6 10 10 N 1.34778 * 119.99926 * 184.49873 * 8 7 6 11 11 C 1.46495 * 120.00305 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46877 * 34.99947 * 11 10 8 13 13 C 1.53005 * 109.47237 * 275.00255 * 11 10 8 14 14 C 1.50700 * 109.47478 * 155.00115 * 11 10 8 15 15 H 1.08000 * 119.99541 * 0.02562 * 14 11 10 16 16 C 1.37869 * 120.00063 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00294 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99984 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47019 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47450 * 120.00010 * 18 16 14 21 21 H 1.48501 * 109.47048 * 240.00090 * 18 16 14 22 22 C 1.38817 * 119.97054 * 0.28214 * 6 5 4 23 23 C 1.50699 * 120.00778 * 180.02562 * 22 6 5 24 24 C 1.38120 * 119.98154 * 359.97438 * 22 6 5 25 25 H 1.08992 * 109.47166 * 59.99394 * 1 2 3 26 26 H 1.08994 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46484 * 299.99529 * 1 2 3 28 28 H 1.08000 * 119.99185 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.00035 * 179.70241 * 5 4 3 30 30 H 0.96999 * 119.99316 * 145.28173 * 7 6 5 31 31 H 0.97010 * 119.99867 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.47136 * 299.99960 * 13 11 10 33 33 H 1.08999 * 109.46774 * 59.99836 * 13 11 10 34 34 H 1.08999 * 109.47328 * 179.97438 * 13 11 10 35 35 H 0.96999 * 120.00445 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.47104 * 89.99472 * 23 22 6 37 37 H 1.08995 * 109.46871 * 209.99563 * 23 22 6 38 38 H 1.08999 * 109.46806 * 329.99844 * 23 22 6 39 39 H 1.08003 * 119.98783 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2905 2.3750 0.0063 5 6 1.9168 3.6054 0.0001 6 6 3.3034 3.6785 -0.0004 7 7 3.9396 4.9273 -0.0004 8 6 3.3904 5.9634 -0.6647 9 8 2.3036 5.8380 -1.1953 10 7 4.0460 7.1385 -0.7410 11 6 3.4494 8.2646 -1.4636 12 1 2.3675 8.2489 -1.3313 13 6 3.7829 8.1495 -2.9524 14 6 4.0028 9.5580 -0.9234 15 1 4.7269 9.5427 -0.1222 16 6 3.5848 10.7608 -1.4519 17 7 2.7034 10.7794 -2.4278 18 14 4.2714 12.3641 -0.7828 19 1 5.2401 12.0723 0.3042 20 1 4.9578 13.1021 -1.8733 21 1 3.1615 13.1924 -0.2468 22 6 4.0591 2.5141 -0.0005 23 6 5.5641 2.5924 -0.0005 24 6 3.4314 1.2838 0.0003 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 0.2120 2.3180 0.0117 29 1 1.3281 4.5110 0.0002 30 1 4.7751 5.0458 0.4778 31 1 4.9133 7.2384 -0.3180 32 1 4.8647 8.1651 -3.0847 33 1 3.3825 7.2140 -3.3431 34 1 3.3386 8.9871 -3.4901 35 1 2.4090 11.6257 -2.7995 36 1 5.9269 2.6113 1.0271 37 1 5.9731 1.7226 -0.5144 38 1 5.8806 3.5002 -0.5142 39 1 4.0193 0.3778 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159275027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:29 Heat of formation + Delta-G solvation = -65.180949 kcal Electronic energy + Delta-G solvation = -21248.244358 eV Core-core repulsion = 17962.373647 eV Total energy + Delta-G solvation = -3285.870711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75851 -40.61894 -38.73427 -36.77268 -35.35840 -34.26929 -33.44421 -31.23752 -30.01389 -27.92324 -27.43476 -27.32373 -24.37281 -22.98422 -21.94606 -21.54228 -19.83776 -18.79669 -18.54624 -17.83874 -17.14330 -16.86564 -16.61084 -16.14371 -15.87135 -15.27690 -15.15381 -14.80181 -14.54114 -14.40202 -14.11872 -13.84796 -13.63550 -13.09839 -12.98380 -12.91259 -12.81517 -12.76099 -12.67304 -12.28444 -12.20165 -12.11419 -11.85707 -11.16355 -11.08573 -10.77088 -10.60952 -9.80423 -9.75041 -8.61047 -8.17313 -6.34684 0.31499 0.41634 1.45499 1.46158 1.58221 1.79704 2.18036 2.40108 2.43220 2.80736 3.13459 3.46170 3.86826 3.89119 4.14762 4.32650 4.40337 4.40601 4.52028 4.63720 4.73680 4.75704 4.85841 4.92869 4.98613 5.04266 5.09850 5.25476 5.36601 5.39624 5.47259 5.52863 5.60744 5.67718 5.84864 5.91049 6.09579 6.27862 6.46250 6.73554 7.24952 7.34483 7.69419 8.89430 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034033 B = 0.003454 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.536582 B = 8105.308250 C = 8549.220697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.104 3.896 4 C -0.200 4.200 5 C -0.102 4.102 6 C 0.115 3.885 7 N -0.671 5.671 8 C 0.692 3.308 9 O -0.627 6.627 10 N -0.714 5.714 11 C 0.289 3.711 12 H -0.001 1.001 13 C -0.134 4.134 14 C -0.545 4.545 15 H 0.075 0.925 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.974 3.026 19 H -0.259 1.259 20 H -0.279 1.279 21 H -0.285 1.285 22 C -0.072 4.072 23 C -0.112 4.112 24 C -0.138 4.138 25 H 0.055 0.945 26 H 0.124 0.876 27 H 0.061 0.939 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.419 0.581 31 H 0.404 0.596 32 H 0.041 0.959 33 H 0.009 0.991 34 H 0.067 0.933 35 H 0.265 0.735 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 -19.125 7.309 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.058 3.942 4 C -0.219 4.219 5 C -0.123 4.123 6 C 0.020 3.980 7 N -0.321 5.321 8 C 0.392 3.608 9 O -0.508 6.508 10 N -0.366 5.366 11 C 0.185 3.815 12 H 0.017 0.983 13 C -0.193 4.193 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.799 3.201 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.211 1.211 22 C -0.075 4.075 23 C -0.169 4.169 24 C -0.157 4.157 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.079 0.921 28 H 0.158 0.842 29 H 0.132 0.868 30 H 0.258 0.742 31 H 0.239 0.761 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.934 -19.200 6.690 20.542 hybrid contribution 0.112 1.438 0.299 1.473 sum 3.046 -17.762 6.988 19.329 Atomic orbital electron populations 1.23303 0.76896 1.05521 1.01854 1.86029 1.23024 1.26244 1.88995 1.19088 0.92786 0.84167 0.98151 1.21220 1.00821 0.91359 1.08480 1.21102 0.94089 0.98077 0.99003 1.17504 0.91448 0.84272 1.04818 1.42386 1.27829 1.07515 1.54371 1.16276 0.83988 0.81146 0.79392 1.90836 1.22715 1.83236 1.54031 1.45432 1.23144 1.10450 1.57620 1.18249 0.92386 0.82314 0.88530 0.98302 1.21921 0.99373 0.98853 0.99131 1.21561 1.26319 0.90539 1.19897 0.90682 1.25803 0.95000 1.02860 0.94952 1.70062 1.31825 1.27372 1.26360 0.85264 0.78126 0.78313 0.78407 1.18268 1.20440 1.21070 1.19739 0.97614 0.89947 1.00189 1.20825 0.88062 1.03961 1.04007 1.20326 0.91160 0.98066 1.06130 0.92620 0.85795 0.92056 0.84208 0.86764 0.74220 0.76124 0.94003 0.97211 0.91400 0.92534 0.88743 0.89294 0.91586 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.37 10.50 -93.29 -0.98 -8.35 16 3 C 0.10 2.66 6.69 22.50 0.15 2.81 16 4 C -0.20 -5.66 9.03 22.35 0.20 -5.46 16 5 C -0.10 -3.50 8.69 22.38 0.19 -3.31 16 6 C 0.11 3.55 6.29 38.10 0.24 3.79 16 7 N -0.67 -20.78 4.76 -317.07 -1.51 -22.29 16 8 C 0.69 28.81 8.38 179.05 1.50 30.31 16 9 O -0.63 -31.91 13.42 -3.99 -0.05 -31.97 16 10 N -0.71 -29.79 5.07 -461.41 -2.34 -32.13 16 11 C 0.29 15.07 2.56 44.25 0.11 15.18 16 12 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 13 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 14 C -0.54 -28.64 8.73 25.60 0.22 -28.42 16 15 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 16 C 0.01 0.74 5.30 84.65 0.45 1.19 16 17 N -0.92 -52.62 11.32 21.44 0.24 -52.38 16 18 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.07 -1.73 5.89 -19.75 -0.12 -1.85 16 23 C -0.11 -1.81 9.47 71.24 0.67 -1.14 16 24 C -0.14 -3.19 9.63 22.35 0.22 -2.97 16 25 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 0.85 7.65 -2.38 -0.02 0.83 16 28 H 0.14 3.40 6.29 -2.91 -0.02 3.38 16 29 H 0.11 4.65 6.19 -2.91 -0.02 4.63 16 30 H 0.42 9.58 7.86 -92.71 -0.73 8.85 16 31 H 0.40 13.78 8.56 -92.70 -0.79 12.99 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 35 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 38 H 0.07 1.13 7.16 -2.39 -0.02 1.11 16 39 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -70.75 325.46 2.57 -68.17 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.44 Total: 29.89 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.62 Total: 5.33 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.61 Total: -106.80 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.03 Total: -40.32 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -70.75 2.57 -68.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159275027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.992 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds