Wall clock time and date at job start Tue Mar 31 2020 01:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77517 * 2 1 4 4 C 1.41384 * 103.98099 * 180.13828 * 3 2 1 5 5 C 1.50703 * 126.79814 * 179.89374 * 4 3 2 6 6 C 1.50697 * 109.47023 * 124.71292 * 5 4 3 7 7 O 1.21288 * 120.00484 * 6.41980 * 6 5 4 8 8 N 1.34780 * 119.99773 * 186.42454 * 6 5 4 9 9 C 1.37100 * 119.99958 * 3.59032 * 8 6 5 10 10 H 1.08001 * 119.99686 * 127.01843 * 9 8 6 11 11 C 1.38942 * 120.00222 * 307.01769 * 9 8 6 12 12 N 1.31413 * 120.00018 * 335.39682 * 11 9 8 13 13 Si 1.86798 * 120.00034 * 155.39479 * 11 9 8 14 14 H 1.48496 * 109.47232 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46981 * 120.00041 * 13 11 9 16 16 H 1.48497 * 109.47306 * 240.00195 * 13 11 9 17 17 C 1.46499 * 119.99947 * 183.59435 * 8 6 5 18 18 C 1.54963 * 110.92459 * 126.54062 * 17 8 6 19 19 C 1.54267 * 104.16020 * 156.29586 * 18 17 8 20 20 C 1.53870 * 106.63927 * 336.44304 * 19 18 17 21 21 C 1.54258 * 106.60083 * 359.97438 * 20 19 18 22 22 N 1.30174 * 106.39685 * 359.62961 * 4 3 2 23 23 O 1.20923 * 111.60495 * 0.23893 * 22 4 3 24 24 H 1.09000 * 109.46862 * 180.29061 * 1 2 3 25 25 H 1.08991 * 109.47186 * 300.30075 * 1 2 3 26 26 H 1.09005 * 109.46833 * 60.29770 * 1 2 3 27 27 H 1.07997 * 128.01080 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47061 * 4.70661 * 5 4 3 29 29 H 1.09009 * 109.46829 * 244.70716 * 5 4 3 30 30 H 0.97000 * 119.99873 * 175.11804 * 12 11 9 31 31 H 1.09003 * 110.67050 * 3.23230 * 17 8 6 32 32 H 1.08997 * 110.47728 * 37.63779 * 18 17 8 33 33 H 1.09004 * 110.52928 * 274.96976 * 18 17 8 34 34 H 1.09004 * 110.02792 * 217.13089 * 19 18 17 35 35 H 1.09001 * 110.03328 * 95.75547 * 19 18 17 36 36 H 1.09007 * 110.03129 * 119.26381 * 20 19 18 37 37 H 1.09000 * 110.03133 * 240.64312 * 20 19 18 38 38 H 1.09001 * 110.49157 * 142.28823 * 21 20 19 39 39 H 1.08998 * 110.48556 * 264.80049 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0033 5 6 4.9211 1.3000 -0.0070 6 6 5.7669 0.8567 1.1588 7 8 5.4084 -0.0738 1.8492 8 7 6.9219 1.4945 1.4344 9 6 7.2909 2.5920 0.7004 10 1 7.5464 3.5148 1.2001 11 6 7.3363 2.5172 -0.6863 12 7 7.5086 1.3557 -1.2764 13 14 7.1525 4.0676 -1.7118 14 1 6.9719 5.2365 -0.8139 15 1 8.3712 4.2622 -2.5379 16 1 5.9688 3.9369 -2.5989 17 6 7.7829 1.0148 2.5182 18 6 9.2285 0.7774 2.0128 19 6 10.0955 0.8874 3.2840 20 6 9.2972 1.7351 4.2899 21 6 7.9725 2.1118 3.5952 22 7 3.4764 -0.7564 0.0032 23 8 2.3095 -1.0737 0.0051 24 1 -0.3633 -1.0277 0.0052 25 1 -0.3633 0.5185 0.8872 26 1 -0.3633 0.5092 -0.8927 27 1 2.0345 2.1271 0.0004 28 1 4.7163 2.3671 0.0776 29 1 5.4542 1.1049 -0.9376 30 1 7.4696 1.2926 -2.2435 31 1 7.3748 0.1059 2.9603 32 1 9.5107 1.5438 1.2910 33 1 9.3213 -0.2154 1.5726 34 1 11.0407 1.3773 3.0500 35 1 10.2814 -0.1044 3.6962 36 1 9.0950 1.1544 5.1899 37 1 9.8554 2.6360 4.5447 38 1 7.1486 2.0924 4.3085 39 1 8.0511 3.0951 3.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172454863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:41 Heat of formation + Delta-G solvation = 16.452184 kcal Electronic energy + Delta-G solvation = -22284.527462 eV Core-core repulsion = 19002.196629 eV Total energy + Delta-G solvation = -3282.330832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -44.30118 -38.89233 -36.75467 -34.21648 -33.92438 -32.91478 -31.48487 -28.64228 -27.95712 -27.43094 -26.62333 -24.77751 -22.52472 -20.80163 -19.68600 -19.49630 -18.89917 -17.14199 -16.64489 -16.35753 -15.78300 -15.20216 -14.70862 -14.31780 -14.18493 -13.77989 -13.39532 -13.18660 -13.09266 -12.61125 -12.46257 -12.28150 -12.04271 -11.78202 -11.64591 -11.17983 -11.10348 -10.87370 -10.66163 -10.57004 -10.39412 -10.35820 -10.28924 -9.82211 -9.64395 -9.48646 -8.85622 -8.73240 -8.26315 -7.31598 -6.44048 -4.26468 2.01359 2.91441 3.06752 3.18985 3.21633 3.63318 4.02088 4.12292 4.69451 4.77187 4.93447 5.02749 5.34370 5.38670 5.40248 5.44829 5.52053 5.65711 5.68148 5.99339 6.11610 6.11974 6.18961 6.22196 6.30130 6.33573 6.46555 6.51141 6.52641 6.58523 6.67155 6.71009 6.93341 7.00128 7.09275 7.29776 7.40617 7.97391 8.60875 8.87698 9.00027 9.57747 10.01926 10.56273 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.006348 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.144980 B = 4409.892435 C = 5562.327169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.060 4.060 3 C -0.232 4.232 4 C 0.043 3.957 5 C -0.058 4.058 6 C 0.517 3.483 7 O -0.598 6.598 8 N -0.446 5.446 9 C -0.336 4.336 10 H 0.084 0.916 11 C 0.050 3.950 12 N -0.846 5.846 13 Si 0.895 3.105 14 H -0.264 1.264 15 H -0.280 1.280 16 H -0.275 1.275 17 C 0.135 3.865 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.129 4.129 22 N -0.336 5.336 23 O 0.094 5.906 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.165 0.835 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.270 0.730 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 2.753 2.047 7.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 C -0.254 4.254 4 C -0.116 4.116 5 C -0.098 4.098 6 C 0.306 3.694 7 O -0.482 6.482 8 N -0.166 5.166 9 C -0.464 4.464 10 H 0.102 0.898 11 C -0.158 4.158 12 N -0.481 5.481 13 Si 0.720 3.280 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.201 1.201 17 C 0.031 3.969 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.167 4.167 22 N -0.038 5.038 23 O 0.026 5.974 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.183 0.817 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.612 1.181 2.223 6.151 hybrid contribution -0.200 1.619 -0.747 1.795 sum -5.813 2.801 1.475 6.619 Atomic orbital electron populations 1.20205 0.84796 1.03997 1.03413 1.24353 0.96058 0.86962 1.04984 1.22362 0.91747 1.00580 1.10670 1.23435 0.96910 0.89823 1.01460 1.20255 0.88807 0.98543 1.02240 1.19925 0.81459 0.83162 0.84816 1.90547 1.73041 1.31874 1.52773 1.43227 1.15855 1.27494 1.30030 1.19228 1.49356 0.89895 0.87903 0.89812 1.25573 0.94920 0.97175 0.98088 1.70144 1.42095 1.25088 1.10754 0.86396 0.78432 0.82954 0.80246 1.18848 1.20602 1.20083 1.21908 0.90591 0.95990 0.88459 1.22489 0.94490 1.02048 0.96534 1.22089 0.98416 0.99035 0.96504 1.22034 0.96613 0.99099 0.97922 1.22595 0.95905 1.00624 0.97597 1.73904 0.95188 1.16782 1.17960 1.84858 1.11778 1.33169 1.67587 0.90383 0.89797 0.89803 0.81745 0.88358 0.85470 0.91968 0.90135 0.89788 0.92747 0.92564 0.92798 0.92681 0.92551 0.92813 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 36.01 0.38 -0.27 16 2 C -0.06 -0.94 7.49 -35.30 -0.26 -1.21 16 3 C -0.23 -4.05 11.05 -39.38 -0.44 -4.48 16 4 C 0.04 0.96 6.17 -82.10 -0.51 0.45 16 5 C -0.06 -1.38 4.47 -29.04 -0.13 -1.51 16 6 C 0.52 13.61 7.24 -10.99 -0.08 13.53 16 7 O -0.60 -17.21 14.91 5.55 0.08 -17.13 16 8 N -0.45 -11.10 2.48 -105.58 -0.26 -11.37 16 9 C -0.34 -8.15 6.90 -14.93 -0.10 -8.25 16 10 H 0.08 1.98 6.95 -52.49 -0.36 1.62 16 11 C 0.05 1.19 3.47 -17.47 -0.06 1.13 16 12 N -0.85 -21.75 11.47 55.50 0.64 -21.11 16 13 Si 0.89 18.40 29.62 -169.99 -5.04 13.36 16 14 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 17 C 0.13 3.04 3.28 -65.89 -0.22 2.82 16 18 C -0.12 -2.44 6.36 -25.03 -0.16 -2.60 16 19 C -0.12 -2.03 6.80 -25.61 -0.17 -2.21 16 20 C -0.12 -1.89 6.80 -25.62 -0.17 -2.06 16 21 C -0.13 -2.44 6.39 -25.07 -0.16 -2.60 16 22 N -0.34 -7.84 11.34 33.42 0.38 -7.46 16 23 O 0.09 1.84 11.20 17.18 0.19 2.03 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.10 2.12 7.77 -51.93 -0.40 1.71 16 29 H 0.13 3.19 5.43 -51.92 -0.28 2.91 16 30 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 31 H 0.08 1.96 7.01 -51.93 -0.36 1.59 16 32 H 0.08 1.91 7.10 -51.93 -0.37 1.54 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.43 6.71 -51.93 -0.35 1.08 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -30.67 319.83 -6.77 -37.44 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.49 Total: 6.67 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.09 Total: -7.25 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.75 Total: -39.93 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.28 Total: -15.10 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.04 Total: 13.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.67 -6.77 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172454863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.890 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds