Wall clock time and date at job start Tue Mar 31 2020 01:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77517 * 2 1 4 4 C 1.41384 * 103.98099 * 180.13828 * 3 2 1 5 5 C 1.50703 * 126.79814 * 179.89374 * 4 3 2 6 6 C 1.50697 * 109.47023 * 124.71292 * 5 4 3 7 7 O 1.21288 * 120.00484 * 6.41980 * 6 5 4 8 8 N 1.34780 * 119.99773 * 186.42454 * 6 5 4 9 9 C 1.37100 * 119.99958 * 3.59032 * 8 6 5 10 10 H 1.08001 * 119.99686 * 127.01843 * 9 8 6 11 11 C 1.38942 * 120.00222 * 307.01769 * 9 8 6 12 12 N 1.31413 * 120.00018 * 335.39682 * 11 9 8 13 13 Si 1.86798 * 120.00034 * 155.39479 * 11 9 8 14 14 H 1.48496 * 109.47232 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46981 * 120.00041 * 13 11 9 16 16 H 1.48497 * 109.47306 * 240.00195 * 13 11 9 17 17 C 1.46499 * 119.99947 * 183.59435 * 8 6 5 18 18 C 1.54963 * 110.92459 * 126.54062 * 17 8 6 19 19 C 1.54267 * 104.16020 * 156.29586 * 18 17 8 20 20 C 1.53870 * 106.63927 * 336.44304 * 19 18 17 21 21 C 1.54258 * 106.60083 * 359.97438 * 20 19 18 22 22 N 1.30174 * 106.39685 * 359.62961 * 4 3 2 23 23 O 1.20923 * 111.60495 * 0.23893 * 22 4 3 24 24 H 1.09000 * 109.46862 * 180.29061 * 1 2 3 25 25 H 1.08991 * 109.47186 * 300.30075 * 1 2 3 26 26 H 1.09005 * 109.46833 * 60.29770 * 1 2 3 27 27 H 1.07997 * 128.01080 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47061 * 4.70661 * 5 4 3 29 29 H 1.09009 * 109.46829 * 244.70716 * 5 4 3 30 30 H 0.97000 * 119.99873 * 175.11804 * 12 11 9 31 31 H 1.09003 * 110.67050 * 3.23230 * 17 8 6 32 32 H 1.08997 * 110.47728 * 37.63779 * 18 17 8 33 33 H 1.09004 * 110.52928 * 274.96976 * 18 17 8 34 34 H 1.09004 * 110.02792 * 217.13089 * 19 18 17 35 35 H 1.09001 * 110.03328 * 95.75547 * 19 18 17 36 36 H 1.09007 * 110.03129 * 119.26381 * 20 19 18 37 37 H 1.09000 * 110.03133 * 240.64312 * 20 19 18 38 38 H 1.09001 * 110.49157 * 142.28823 * 21 20 19 39 39 H 1.08998 * 110.48556 * 264.80049 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0033 5 6 4.9211 1.3000 -0.0070 6 6 5.7669 0.8567 1.1588 7 8 5.4084 -0.0738 1.8492 8 7 6.9219 1.4945 1.4344 9 6 7.2909 2.5920 0.7004 10 1 7.5464 3.5148 1.2001 11 6 7.3363 2.5172 -0.6863 12 7 7.5086 1.3557 -1.2764 13 14 7.1525 4.0676 -1.7118 14 1 6.9719 5.2365 -0.8139 15 1 8.3712 4.2622 -2.5379 16 1 5.9688 3.9369 -2.5989 17 6 7.7829 1.0148 2.5182 18 6 9.2285 0.7774 2.0128 19 6 10.0955 0.8874 3.2840 20 6 9.2972 1.7351 4.2899 21 6 7.9725 2.1118 3.5952 22 7 3.4764 -0.7564 0.0032 23 8 2.3095 -1.0737 0.0051 24 1 -0.3633 -1.0277 0.0052 25 1 -0.3633 0.5185 0.8872 26 1 -0.3633 0.5092 -0.8927 27 1 2.0345 2.1271 0.0004 28 1 4.7163 2.3671 0.0776 29 1 5.4542 1.1049 -0.9376 30 1 7.4696 1.2926 -2.2435 31 1 7.3748 0.1059 2.9603 32 1 9.5107 1.5438 1.2910 33 1 9.3213 -0.2154 1.5726 34 1 11.0407 1.3773 3.0500 35 1 10.2814 -0.1044 3.6962 36 1 9.0950 1.1544 5.1899 37 1 9.8554 2.6360 4.5447 38 1 7.1486 2.0924 4.3085 39 1 8.0511 3.0951 3.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172454863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:40 Heat of formation + Delta-G solvation = -1.526312 kcal Electronic energy + Delta-G solvation = -22285.307068 eV Core-core repulsion = 19002.196629 eV Total energy + Delta-G solvation = -3283.110438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.84062 -40.78007 -38.46668 -36.12355 -35.45713 -34.19386 -33.36302 -30.39975 -29.50757 -28.56671 -28.25772 -26.66519 -24.04608 -22.47623 -21.41878 -21.02037 -20.51267 -18.77286 -18.24094 -18.08161 -17.53317 -17.06558 -16.33315 -16.03262 -15.80085 -15.39818 -14.80662 -14.48713 -14.22373 -14.13552 -13.89135 -13.86268 -13.55930 -13.43092 -13.13095 -12.97167 -12.80473 -12.59412 -12.20293 -12.06783 -11.99792 -11.91997 -11.88977 -11.39872 -11.20210 -11.08298 -10.71862 -10.24709 -10.12884 -9.25329 -8.32490 -6.21907 0.68936 1.34660 1.43002 1.49502 1.61255 2.08205 2.31803 2.42408 2.91718 2.96778 3.41455 3.70421 3.86925 3.87587 4.10012 4.22130 4.37487 4.44137 4.49876 4.62921 4.66581 4.74280 4.76433 4.79659 4.79969 4.88551 4.92116 4.99961 5.02968 5.13325 5.13681 5.19584 5.34463 5.39342 5.47124 5.51995 5.57469 6.07030 6.66406 6.97449 7.54632 7.60639 8.07315 8.69175 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.006348 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.144980 B = 4409.892435 C = 5562.327169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.040 4.040 3 C -0.240 4.240 4 C 0.009 3.991 5 C -0.048 4.048 6 C 0.496 3.504 7 O -0.636 6.636 8 N -0.448 5.448 9 C -0.347 4.347 10 H 0.092 0.908 11 C 0.019 3.981 12 N -0.881 5.881 13 Si 0.961 3.039 14 H -0.251 1.251 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.118 3.882 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.120 4.120 22 N -0.387 5.387 23 O 0.089 5.911 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.199 0.801 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.271 0.729 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 4.854 2.501 9.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C -0.262 4.262 4 C -0.149 4.149 5 C -0.088 4.088 6 C 0.286 3.714 7 O -0.524 6.524 8 N -0.166 5.166 9 C -0.475 4.475 10 H 0.109 0.891 11 C -0.186 4.186 12 N -0.517 5.517 13 Si 0.783 3.217 14 H -0.174 1.174 15 H -0.209 1.209 16 H -0.195 1.195 17 C 0.014 3.986 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.158 4.158 22 N -0.091 5.091 23 O 0.021 5.979 24 H 0.111 0.889 25 H 0.125 0.875 26 H 0.130 0.870 27 H 0.216 0.784 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.615 3.307 2.690 7.869 hybrid contribution 0.075 0.899 -0.892 1.269 sum -6.539 4.206 1.798 7.980 Atomic orbital electron populations 1.20555 0.79908 1.05863 1.05789 1.25452 0.98328 0.85176 1.01466 1.22720 0.89621 1.02680 1.11143 1.23601 0.98131 0.90147 1.03003 1.20053 0.89261 0.99499 0.99947 1.20521 0.82170 0.83180 0.85505 1.90495 1.74052 1.33568 1.54302 1.43470 1.15619 1.27347 1.30211 1.19479 1.49725 0.89895 0.88360 0.89063 1.26317 0.93805 0.99766 0.98728 1.70240 1.42902 1.27554 1.11049 0.85386 0.78153 0.79524 0.78600 1.17380 1.20942 1.19533 1.22145 0.90872 0.96423 0.89163 1.22376 0.94542 0.99798 0.98244 1.22057 0.98399 1.00459 0.94229 1.22023 0.94630 1.00348 0.97755 1.22510 0.98014 0.98821 0.96468 1.73881 0.97217 1.17916 1.20057 1.84780 1.11231 1.34554 1.67335 0.88863 0.87473 0.86966 0.78422 0.86926 0.87431 0.91922 0.92936 0.91825 0.95163 0.90431 0.91450 0.90939 0.89838 0.92747 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.45 71.24 0.74 -0.24 16 2 C -0.04 -1.20 7.49 25.04 0.19 -1.02 16 3 C -0.24 -8.11 11.05 22.40 0.25 -7.86 16 4 C 0.01 0.43 6.17 43.58 0.27 0.70 16 5 C -0.05 -2.33 4.47 29.10 0.13 -2.20 16 6 C 0.50 27.39 7.24 87.66 0.63 28.02 16 7 O -0.64 -38.82 14.91 -3.05 -0.05 -38.86 16 8 N -0.45 -23.14 2.48 -606.32 -1.50 -24.64 16 9 C -0.35 -17.08 6.90 84.04 0.58 -16.50 16 10 H 0.09 4.30 6.95 -2.91 -0.02 4.28 16 11 C 0.02 0.89 3.47 84.92 0.29 1.19 16 12 N -0.88 -46.84 11.47 21.66 0.25 -46.59 16 13 Si 0.96 37.44 29.62 68.60 2.03 39.47 16 14 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 15 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 17 C 0.12 5.49 3.28 46.31 0.15 5.64 16 18 C -0.11 -4.76 6.36 31.69 0.20 -4.55 16 19 C -0.11 -3.59 6.80 31.32 0.21 -3.37 16 20 C -0.11 -3.21 6.80 31.31 0.21 -3.00 16 21 C -0.12 -4.48 6.39 31.67 0.20 -4.28 16 22 N -0.39 -18.79 11.34 -49.55 -0.56 -19.36 16 23 O 0.09 3.51 11.20 71.65 0.80 4.32 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.20 5.05 8.06 -2.91 -0.02 5.02 16 28 H 0.11 4.94 7.77 -2.39 -0.02 4.93 16 29 H 0.11 5.66 5.43 -2.38 -0.01 5.65 16 30 H 0.27 13.66 8.32 -92.71 -0.77 12.89 16 31 H 0.05 2.71 7.01 -2.39 -0.02 2.69 16 32 H 0.06 2.96 7.10 -2.39 -0.02 2.94 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 2.64 6.71 -2.39 -0.02 2.63 16 Total: -1.00 -71.75 319.83 6.09 -65.66 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 1.05 Total: 27.47 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.07 Total: -7.46 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -1.82 Total: -90.59 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: 0.76 Total: -34.55 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -71.75 6.09 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172454863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.136 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds