Wall clock time and date at job start Tue Mar 31 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30429 * 125.99486 * 2 1 4 4 N 1.39921 * 108.91898 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.74214 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51473 * 359.73000 * 4 3 2 7 7 C 1.50705 * 126.29801 * 180.26416 * 6 4 3 8 8 C 1.38124 * 107.40907 * 0.42989 * 6 4 3 9 9 C 1.47286 * 126.42770 * 179.83925 * 8 6 4 10 10 O 1.21521 * 119.99538 * 274.46266 * 9 8 6 11 11 O 1.34750 * 120.00235 * 94.47254 * 9 8 6 12 12 C 1.45196 * 117.00238 * 184.12571 * 11 9 8 13 13 C 1.53001 * 109.47350 * 184.33134 * 12 11 9 14 14 C 1.50703 * 115.54479 * 295.08929 * 13 12 11 15 15 H 1.07999 * 119.99499 * 114.95259 * 14 13 12 16 16 C 1.37877 * 120.00245 * 294.67454 * 14 13 12 17 17 N 1.31507 * 119.99745 * 172.75198 * 16 14 13 18 18 Si 1.86797 * 119.99921 * 352.75312 * 16 14 13 19 19 H 1.48499 * 109.47070 * 94.08404 * 18 16 14 20 20 H 1.48504 * 109.47048 * 214.08425 * 18 16 14 21 21 H 1.48503 * 109.47208 * 334.08350 * 18 16 14 22 22 C 1.53000 * 117.49958 * 80.76299 * 13 12 11 23 23 C 1.52996 * 117.49824 * 149.42368 * 13 12 11 24 24 H 1.09000 * 109.46913 * 269.97205 * 1 2 3 25 25 H 1.09000 * 109.47238 * 29.97217 * 1 2 3 26 26 H 1.09003 * 109.47557 * 149.97326 * 1 2 3 27 27 H 1.09001 * 109.47019 * 89.97831 * 5 4 3 28 28 H 1.08997 * 109.46919 * 209.97498 * 5 4 3 29 29 H 1.08997 * 109.47476 * 329.97308 * 5 4 3 30 30 H 1.08994 * 109.47262 * 270.19445 * 7 6 4 31 31 H 1.09004 * 109.47062 * 30.19841 * 7 6 4 32 32 H 1.08997 * 109.47161 * 150.19253 * 7 6 4 33 33 H 1.08999 * 109.47298 * 64.32345 * 12 11 9 34 34 H 1.09000 * 109.46846 * 304.32577 * 12 11 9 35 35 H 0.97005 * 120.00290 * 180.02562 * 17 16 14 36 36 H 1.09004 * 117.49157 * 215.00335 * 22 13 12 37 37 H 1.09001 * 117.50089 * 0.02562 * 22 13 12 38 38 H 1.08999 * 117.50522 * 359.97263 * 23 13 12 39 39 H 1.09007 * 117.49584 * 144.97492 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6111 0.6444 -0.0006 5 6 4.7783 1.5298 -0.0013 6 6 3.6448 -0.6974 0.0050 7 6 4.8814 -1.5587 0.0121 8 6 2.3376 -1.1436 -0.0007 9 6 1.8928 -2.5477 -0.0009 10 8 1.7925 -3.1531 -1.0498 11 8 1.5969 -3.1609 1.1620 12 6 1.2542 -4.5703 1.0954 13 6 0.8474 -5.0625 2.4858 14 6 1.9361 -5.0396 3.5276 15 1 1.8516 -4.3851 4.3825 16 6 3.0372 -5.8583 3.3922 17 7 4.0516 -5.7382 4.2204 18 14 3.0879 -7.1381 2.0325 19 1 3.7803 -6.5730 0.8465 20 1 3.8218 -8.3379 2.5091 21 1 1.7020 -7.5207 1.6609 22 6 -0.5807 -4.7681 2.9496 23 6 -0.1798 -6.1938 2.5622 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 5.0680 1.7499 1.0262 28 1 5.6055 1.0400 -0.5151 29 1 4.5299 2.4582 -0.5156 30 1 5.1845 -1.7678 -1.0137 31 1 5.6857 -1.0354 0.5292 32 1 4.6684 -2.4960 0.5262 33 1 2.1170 -5.1380 0.7470 34 1 0.4238 -4.7100 0.4033 35 1 4.8265 -6.3139 4.1250 36 1 -0.7326 -4.5579 4.0083 37 1 -1.2305 -4.2242 2.2640 38 1 -0.5662 -6.5872 1.6219 39 1 -0.0680 -6.9217 3.3658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174757018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:41 Heat of formation + Delta-G solvation = 13.924349 kcal Electronic energy + Delta-G solvation = -21994.764377 eV Core-core repulsion = 18712.323929 eV Total energy + Delta-G solvation = -3282.440448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42993 -39.44670 -37.00090 -35.24329 -34.32508 -32.14512 -32.11597 -29.62713 -28.12928 -26.93490 -25.80798 -25.11770 -22.37637 -21.56297 -19.70102 -19.49967 -19.12387 -17.35055 -16.87611 -16.25461 -15.74436 -15.57505 -15.29480 -14.63849 -13.95432 -13.84674 -13.57356 -13.35411 -13.22557 -13.04530 -12.72451 -12.59229 -12.40466 -12.26270 -12.13162 -11.96924 -11.91347 -11.06810 -10.89243 -10.79003 -10.60643 -10.34873 -10.03212 -9.91806 -9.51012 -9.16157 -9.06454 -8.67332 -8.50712 -8.45751 -6.12593 -4.12086 1.68524 2.28208 2.46596 2.60101 3.24360 3.35280 3.40505 3.48999 4.37562 4.39315 4.49113 4.80304 4.89093 4.95946 5.05096 5.19914 5.20512 5.29184 5.42376 5.47572 5.65876 5.67153 5.75383 5.84801 5.88118 5.89995 5.97588 6.03532 6.15975 6.35724 6.47842 6.53453 6.67291 6.84583 6.88294 7.09366 7.16763 7.62422 7.70131 8.34903 8.50025 8.91979 9.50145 10.99281 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.005855 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.354050 B = 4781.450051 C = 5473.024708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.121 3.879 3 N -0.300 5.300 4 N -0.363 5.363 5 C 0.099 3.901 6 C 0.141 3.859 7 C -0.103 4.103 8 C -0.261 4.261 9 C 0.542 3.458 10 O -0.517 6.517 11 O -0.318 6.318 12 C 0.105 3.895 13 C -0.009 4.009 14 C -0.475 4.475 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.894 5.894 18 Si 0.857 3.143 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.248 1.248 22 C -0.175 4.175 23 C -0.182 4.182 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 11.070 -8.957 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 N -0.122 5.122 4 N -0.143 5.143 5 C -0.042 4.042 6 C 0.010 3.990 7 C -0.161 4.161 8 C -0.274 4.274 9 C 0.384 3.616 10 O -0.406 6.406 11 O -0.232 6.232 12 C 0.031 3.969 13 C -0.010 4.010 14 C -0.512 4.512 15 H 0.097 0.903 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.684 3.316 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.171 1.171 22 C -0.212 4.212 23 C -0.219 4.219 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.193 12.162 -9.178 15.238 hybrid contribution 0.335 -1.669 -0.750 1.860 sum 0.142 10.493 -9.927 14.446 Atomic orbital electron populations 1.20277 0.85956 1.03498 1.03846 1.22263 0.96893 0.88579 0.96810 1.77050 0.85840 1.22175 1.27118 1.48040 1.05922 1.03898 1.56449 1.21924 0.84039 0.94349 1.03853 1.21281 0.95974 0.84617 0.97097 1.20638 0.92186 0.99363 1.03894 1.19013 0.92430 0.91664 1.24271 1.20173 0.73287 0.85845 0.82257 1.90783 1.49615 1.66756 1.33482 1.86765 1.77209 1.26682 1.32577 1.22967 0.98838 0.76772 0.98337 1.19334 0.90387 0.98564 0.92686 1.20229 1.01184 1.23364 1.06439 0.90254 1.24908 0.94925 0.96842 0.95660 1.69902 1.06253 1.38928 1.38056 0.87160 0.79782 0.82047 0.82575 1.20524 1.21438 1.17112 1.22788 0.99071 0.98390 1.00957 1.23081 1.05506 0.91884 1.01462 0.89477 0.90374 0.90378 0.90222 0.89251 0.88982 0.89444 0.90099 0.88594 0.92195 0.93070 0.92588 0.89352 0.90756 0.91055 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.28 36.01 0.37 -0.63 16 2 C 0.12 1.98 7.27 -82.01 -0.60 1.39 16 3 N -0.30 -4.74 12.50 33.90 0.42 -4.32 16 4 N -0.36 -5.05 3.98 -63.32 -0.25 -5.30 16 5 C 0.10 0.82 11.06 59.85 0.66 1.48 16 6 C 0.14 2.20 7.01 -81.59 -0.57 1.63 16 7 C -0.10 -1.32 9.70 36.01 0.35 -0.97 16 8 C -0.26 -4.75 6.00 -105.08 -0.63 -5.38 16 9 C 0.54 11.22 7.12 34.41 0.24 11.47 16 10 O -0.52 -11.44 16.82 -19.28 -0.32 -11.77 16 11 O -0.32 -7.21 10.16 -40.63 -0.41 -7.62 16 12 C 0.10 2.38 5.02 37.16 0.19 2.56 16 13 C -0.01 -0.21 1.07 -155.66 -0.17 -0.37 16 14 C -0.47 -13.19 9.32 -34.44 -0.32 -13.51 16 15 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 16 C 0.08 2.23 5.46 -17.82 -0.10 2.14 16 17 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 18 Si 0.86 21.03 25.05 -169.99 -4.26 16.77 16 19 H -0.28 -6.83 7.03 56.52 0.40 -6.43 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.25 -5.67 5.67 56.52 0.32 -5.35 16 22 C -0.17 -3.54 9.96 -26.69 -0.27 -3.81 16 23 C -0.18 -3.77 7.94 -26.70 -0.21 -3.98 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.52 7.64 -51.93 -0.40 0.13 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 32 H 0.10 1.48 7.96 -51.93 -0.41 1.07 16 33 H 0.06 1.44 5.18 -51.93 -0.27 1.17 16 34 H 0.05 1.06 7.95 -51.93 -0.41 0.65 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -34.02 333.55 -5.83 -39.85 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.76 Total: 1.28 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.05 Total: -7.97 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.95 Total: -35.56 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.74 Total: -19.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.26 Total: 16.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.02 -5.83 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174757018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.775 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds