Wall clock time and date at job start Tue Mar 31 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30429 * 125.99486 * 2 1 4 4 N 1.39921 * 108.91898 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.74214 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51473 * 359.73000 * 4 3 2 7 7 C 1.50705 * 126.29801 * 180.26416 * 6 4 3 8 8 C 1.38124 * 107.40907 * 0.42989 * 6 4 3 9 9 C 1.47286 * 126.42770 * 179.83925 * 8 6 4 10 10 O 1.21521 * 119.99538 * 274.46266 * 9 8 6 11 11 O 1.34750 * 120.00235 * 94.47254 * 9 8 6 12 12 C 1.45196 * 117.00238 * 184.12571 * 11 9 8 13 13 C 1.53001 * 109.47350 * 184.33134 * 12 11 9 14 14 C 1.50703 * 115.54479 * 295.08929 * 13 12 11 15 15 H 1.07999 * 119.99499 * 114.95259 * 14 13 12 16 16 C 1.37877 * 120.00245 * 294.67454 * 14 13 12 17 17 N 1.31507 * 119.99745 * 172.75198 * 16 14 13 18 18 Si 1.86797 * 119.99921 * 352.75312 * 16 14 13 19 19 H 1.48499 * 109.47070 * 94.08404 * 18 16 14 20 20 H 1.48504 * 109.47048 * 214.08425 * 18 16 14 21 21 H 1.48503 * 109.47208 * 334.08350 * 18 16 14 22 22 C 1.53000 * 117.49958 * 80.76299 * 13 12 11 23 23 C 1.52996 * 117.49824 * 149.42368 * 13 12 11 24 24 H 1.09000 * 109.46913 * 269.97205 * 1 2 3 25 25 H 1.09000 * 109.47238 * 29.97217 * 1 2 3 26 26 H 1.09003 * 109.47557 * 149.97326 * 1 2 3 27 27 H 1.09001 * 109.47019 * 89.97831 * 5 4 3 28 28 H 1.08997 * 109.46919 * 209.97498 * 5 4 3 29 29 H 1.08997 * 109.47476 * 329.97308 * 5 4 3 30 30 H 1.08994 * 109.47262 * 270.19445 * 7 6 4 31 31 H 1.09004 * 109.47062 * 30.19841 * 7 6 4 32 32 H 1.08997 * 109.47161 * 150.19253 * 7 6 4 33 33 H 1.08999 * 109.47298 * 64.32345 * 12 11 9 34 34 H 1.09000 * 109.46846 * 304.32577 * 12 11 9 35 35 H 0.97005 * 120.00290 * 180.02562 * 17 16 14 36 36 H 1.09004 * 117.49157 * 215.00335 * 22 13 12 37 37 H 1.09001 * 117.50089 * 0.02562 * 22 13 12 38 38 H 1.08999 * 117.50522 * 359.97263 * 23 13 12 39 39 H 1.09007 * 117.49584 * 144.97492 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6111 0.6444 -0.0006 5 6 4.7783 1.5298 -0.0013 6 6 3.6448 -0.6974 0.0050 7 6 4.8814 -1.5587 0.0121 8 6 2.3376 -1.1436 -0.0007 9 6 1.8928 -2.5477 -0.0009 10 8 1.7925 -3.1531 -1.0498 11 8 1.5969 -3.1609 1.1620 12 6 1.2542 -4.5703 1.0954 13 6 0.8474 -5.0625 2.4858 14 6 1.9361 -5.0396 3.5276 15 1 1.8516 -4.3851 4.3825 16 6 3.0372 -5.8583 3.3922 17 7 4.0516 -5.7382 4.2204 18 14 3.0879 -7.1381 2.0325 19 1 3.7803 -6.5730 0.8465 20 1 3.8218 -8.3379 2.5091 21 1 1.7020 -7.5207 1.6609 22 6 -0.5807 -4.7681 2.9496 23 6 -0.1798 -6.1938 2.5622 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 5.0680 1.7499 1.0262 28 1 5.6055 1.0400 -0.5151 29 1 4.5299 2.4582 -0.5156 30 1 5.1845 -1.7678 -1.0137 31 1 5.6857 -1.0354 0.5292 32 1 4.6684 -2.4960 0.5262 33 1 2.1170 -5.1380 0.7470 34 1 0.4238 -4.7100 0.4033 35 1 4.8265 -6.3139 4.1250 36 1 -0.7326 -4.5579 4.0083 37 1 -1.2305 -4.2242 2.2640 38 1 -0.5662 -6.5872 1.6219 39 1 -0.0680 -6.9217 3.3658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174757018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:40 Heat of formation + Delta-G solvation = -7.767110 kcal Electronic energy + Delta-G solvation = -21995.704989 eV Core-core repulsion = 18712.323929 eV Total energy + Delta-G solvation = -3283.381060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.61819 -41.06721 -38.73433 -36.94702 -35.37138 -34.28003 -33.25240 -30.56506 -29.57625 -28.45817 -27.30179 -26.61235 -23.77509 -23.17813 -21.11919 -20.96251 -20.63395 -18.86422 -18.66154 -17.76782 -17.37876 -16.79254 -16.65110 -16.45271 -15.52376 -15.09029 -14.86426 -14.52654 -14.46888 -14.43276 -14.15982 -13.98091 -13.78603 -13.53094 -13.41041 -12.99047 -12.97702 -12.90854 -12.83127 -12.30279 -12.14308 -12.03569 -11.73259 -11.59633 -11.38446 -10.98505 -10.61246 -10.38463 -10.24921 -9.71491 -8.29916 -6.33514 0.50954 1.00175 1.14280 1.30298 1.35755 1.36205 1.47553 1.98531 2.34273 2.97366 3.26447 3.38488 3.43719 3.79863 3.90959 3.98734 4.13749 4.18429 4.29706 4.31869 4.37266 4.41810 4.47145 4.60442 4.64271 4.67643 4.70541 4.81054 4.86764 4.89178 4.93836 4.99161 5.20114 5.36946 5.48631 5.52788 5.67179 5.82691 6.30398 6.45486 6.68657 6.75276 7.32055 8.85876 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.005855 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.354050 B = 4781.450051 C = 5473.024708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.112 3.888 3 N -0.313 5.313 4 N -0.355 5.355 5 C 0.084 3.916 6 C 0.142 3.858 7 C -0.101 4.101 8 C -0.309 4.309 9 C 0.549 3.451 10 O -0.536 6.536 11 O -0.337 6.337 12 C 0.107 3.893 13 C -0.045 4.045 14 C -0.476 4.476 15 H 0.032 0.968 16 C 0.027 3.973 17 N -0.943 5.943 18 Si 0.914 3.086 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.217 1.217 22 C -0.158 4.158 23 C -0.165 4.165 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.266 0.734 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 11.488 -10.724 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.054 4.054 3 N -0.135 5.135 4 N -0.134 5.134 5 C -0.054 4.054 6 C 0.009 3.991 7 C -0.159 4.159 8 C -0.321 4.321 9 C 0.393 3.607 10 O -0.427 6.427 11 O -0.252 6.252 12 C 0.034 3.966 13 C -0.045 4.045 14 C -0.514 4.514 15 H 0.051 0.949 16 C -0.171 4.171 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.139 1.139 22 C -0.195 4.195 23 C -0.202 4.202 24 H 0.111 0.889 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.137 0.863 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.762 12.613 -10.945 16.717 hybrid contribution 0.561 -1.644 -0.126 1.742 sum -0.201 10.969 -11.071 15.586 Atomic orbital electron populations 1.20378 0.84222 1.04418 1.04495 1.22697 0.98267 0.87958 0.96478 1.76995 0.86840 1.22142 1.27528 1.48491 1.06524 1.03870 1.54536 1.22447 0.82968 0.94508 1.05492 1.21632 0.95956 0.85698 0.95795 1.20723 0.92113 0.97814 1.05269 1.19190 0.94277 0.90749 1.27929 1.20534 0.72249 0.86551 0.81348 1.90745 1.50570 1.67548 1.33833 1.86780 1.77659 1.26800 1.33983 1.22858 0.98924 0.76821 0.98011 1.19251 0.90665 1.02344 0.92286 1.20338 1.02887 1.21999 1.06158 0.94943 1.25675 0.94451 0.98919 0.98042 1.70039 1.07236 1.40474 1.40487 0.86254 0.81335 0.79216 0.79388 1.20724 1.21353 1.13908 1.22866 0.96755 0.98494 1.01408 1.23139 1.02764 0.91623 1.02719 0.88866 0.88145 0.90726 0.88834 0.86314 0.87473 0.87318 0.86743 0.91796 0.93848 0.90679 0.92509 0.89822 0.87893 0.87985 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.28 71.24 0.73 -1.19 16 2 C 0.11 3.61 7.27 43.53 0.32 3.93 16 3 N -0.31 -9.51 12.50 -46.65 -0.58 -10.09 16 4 N -0.36 -9.24 3.98 -354.25 -1.41 -10.65 16 5 C 0.08 1.15 11.06 127.77 1.41 2.56 16 6 C 0.14 4.31 7.01 42.17 0.30 4.61 16 7 C -0.10 -2.48 9.70 71.24 0.69 -1.79 16 8 C -0.31 -11.22 6.00 -20.16 -0.12 -11.34 16 9 C 0.55 22.89 7.12 70.20 0.50 23.39 16 10 O -0.54 -23.70 16.82 19.77 0.33 -23.37 16 11 O -0.34 -15.44 10.16 -56.61 -0.58 -16.01 16 12 C 0.11 4.79 5.02 71.98 0.36 5.15 16 13 C -0.04 -2.06 1.07 -52.93 -0.06 -2.11 16 14 C -0.48 -27.18 9.32 25.60 0.24 -26.94 16 15 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 16 C 0.03 1.56 5.46 84.66 0.46 2.03 16 17 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 18 Si 0.91 43.39 25.05 68.60 1.72 45.11 16 19 H -0.28 -13.34 7.03 99.48 0.70 -12.64 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.22 -9.12 5.67 99.48 0.56 -8.56 16 22 C -0.16 -6.09 9.96 30.62 0.30 -5.78 16 23 C -0.17 -6.36 7.94 30.62 0.24 -6.11 16 24 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 1.89 8.01 -2.39 -0.02 1.87 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.12 0.94 7.64 -2.39 -0.02 0.92 16 29 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.11 1.96 7.71 -2.38 -0.02 1.95 16 32 H 0.06 2.01 7.96 -2.39 -0.02 1.99 16 33 H 0.04 2.05 5.18 -2.39 -0.01 2.04 16 34 H 0.08 2.94 7.95 -2.39 -0.02 2.92 16 35 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 36 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 37 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 Total: -1.00 -76.40 333.55 6.06 -70.34 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.90 Total: 16.32 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 5.38 Total: -13.61 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.69 Total: -78.78 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.24 Total: -39.38 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.72 Total: 45.11 kcal Total: -76.40 6.06 -70.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174757018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.570 kcal (2) G-P(sol) polarization free energy of solvation -76.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds