Wall clock time and date at job start Mon Mar 30 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 116.99828 * 2 1 4 4 C 1.38820 * 120.01708 * 90.00157 * 3 2 1 5 5 C 1.50692 * 119.95334 * 0.27482 * 4 3 2 6 6 C 1.38175 * 120.08918 * 180.02562 * 4 3 2 7 7 C 1.38150 * 120.13139 * 0.02562 * 6 4 3 8 8 C 1.38936 * 120.03841 * 359.95615 * 7 6 4 9 9 N 1.39658 * 120.05198 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99923 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.47444 * 180.02562 * 10 9 8 12 12 O 1.21290 * 119.99672 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00190 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99958 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99823 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99920 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99863 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47334 * 60.00249 * 18 16 14 20 20 H 1.48502 * 109.47034 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47362 * 300.00323 * 18 16 14 22 22 C 1.38564 * 120.01746 * 269.96992 * 3 2 1 23 23 C 1.50699 * 120.06515 * 0.03023 * 22 3 2 24 24 H 1.08998 * 109.46932 * 59.99951 * 1 2 3 25 25 H 1.08996 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47467 * 300.00185 * 1 2 3 27 27 H 1.09002 * 109.47359 * 269.72877 * 5 4 3 28 28 H 1.08998 * 109.47844 * 29.72303 * 5 4 3 29 29 H 1.09001 * 109.47583 * 149.72768 * 5 4 3 30 30 H 1.08001 * 119.93092 * 179.97438 * 6 4 3 31 31 H 1.07998 * 119.98298 * 179.97438 * 7 6 4 32 32 H 0.96999 * 120.00714 * 179.97438 * 9 8 7 33 33 H 1.09005 * 109.46600 * 299.99502 * 10 9 8 34 34 H 1.09001 * 109.47435 * 59.99447 * 10 9 8 35 35 H 0.96997 * 120.00079 * 359.97438 * 13 11 10 36 36 H 0.96996 * 119.99832 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47247 * 269.94839 * 23 22 3 38 38 H 1.09000 * 109.47730 * 29.94674 * 23 22 3 39 39 H 1.08999 * 109.47303 * 149.95449 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3612 1.8296 1.2020 5 6 2.0245 1.1548 2.5066 6 6 2.9880 3.0610 1.2037 7 6 3.3025 3.6808 0.0098 8 6 2.9898 3.0662 -1.1963 9 7 3.3081 3.6922 -2.4035 10 6 3.9728 4.9978 -2.3986 11 6 4.2019 5.4502 -3.8177 12 8 3.8455 4.7506 -4.7422 13 7 4.8029 6.6320 -4.0595 14 6 5.0118 7.0434 -5.3506 15 1 4.6952 6.4201 -6.1738 16 6 5.6309 8.2621 -5.5999 17 7 6.0166 9.0202 -4.5982 18 14 5.9162 8.8222 -7.3590 19 1 4.6123 8.9319 -8.0612 20 1 6.5880 10.1465 -7.3540 21 1 6.7743 7.8337 -8.0602 22 6 2.3612 1.8282 -1.1998 23 6 2.0200 1.1585 -2.5060 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.0276 1.4586 2.8262 28 1 2.0494 0.0733 2.3735 29 1 2.7528 1.4444 3.2642 30 1 3.2318 3.5403 2.1404 31 1 3.7921 4.6434 0.0140 32 1 3.0898 3.2624 -3.2452 33 1 3.3438 5.7237 -1.8833 34 1 4.9301 4.9162 -1.8838 35 1 5.0876 7.1916 -3.3202 36 1 6.4491 9.8708 -4.7723 37 1 2.8536 0.5308 -2.8211 38 1 1.1300 0.5426 -2.3770 39 1 1.8298 1.9176 -3.2647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175114869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:10 Heat of formation + Delta-G solvation = -56.500563 kcal Electronic energy + Delta-G solvation = -21042.092352 eV Core-core repulsion = 17756.598051 eV Total energy + Delta-G solvation = -3285.494301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25250 -38.59721 -37.49974 -35.15205 -34.04924 -32.56028 -31.38290 -30.69687 -28.14864 -27.54864 -26.07684 -25.27996 -24.20932 -21.60308 -20.44689 -19.45865 -18.14597 -17.82604 -16.85939 -16.08275 -15.64724 -15.13989 -14.92431 -14.79105 -14.46378 -14.30686 -13.87877 -13.56760 -13.41874 -13.22979 -13.09091 -12.60996 -12.46664 -12.19710 -12.02327 -11.89927 -11.65072 -11.44665 -11.38068 -11.11726 -10.90571 -10.52644 -10.33317 -9.94520 -9.68285 -9.60773 -8.64883 -8.43540 -8.12954 -7.07809 -6.54266 -3.96150 1.35864 1.66142 3.12004 3.19739 3.23216 3.46411 3.68814 3.72551 4.07605 4.14556 4.83614 4.91442 5.02483 5.13003 5.13823 5.16413 5.19946 5.37726 5.41584 5.55760 5.60341 5.65384 5.69069 5.77134 5.81710 5.86498 5.88155 6.00328 6.09866 6.31755 6.45423 6.51822 6.69924 6.74367 7.43403 7.47750 7.61660 7.90440 8.08060 8.43046 9.02370 9.36365 9.84823 10.62682 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038725 B = 0.003198 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.864666 B = 8752.454599 C = 9379.139761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.336 6.336 3 C 0.136 3.864 4 C -0.172 4.172 5 C -0.098 4.098 6 C -0.062 4.062 7 C -0.202 4.202 8 C 0.236 3.764 9 N -0.722 5.722 10 C 0.112 3.888 11 C 0.429 3.571 12 O -0.595 6.595 13 N -0.550 5.550 14 C -0.306 4.306 15 H 0.104 0.896 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.933 3.067 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.181 4.181 23 C -0.101 4.101 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.411 0.589 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.395 0.605 36 H 0.275 0.725 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -11.592 12.608 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.252 6.252 3 C 0.092 3.908 4 C -0.175 4.175 5 C -0.155 4.155 6 C -0.081 4.081 7 C -0.225 4.225 8 C 0.130 3.870 9 N -0.353 5.353 10 C -0.016 4.016 11 C 0.214 3.786 12 O -0.481 6.481 13 N -0.185 5.185 14 C -0.435 4.435 15 H 0.122 0.878 16 C -0.176 4.176 17 N -0.536 5.536 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.186 4.186 23 C -0.158 4.158 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.252 0.748 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.229 0.771 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.853 -11.819 11.954 18.554 hybrid contribution 0.199 0.872 -0.688 1.128 sum -7.654 -10.947 11.266 17.474 Atomic orbital electron populations 1.22920 0.79418 1.02721 1.00692 1.85949 1.19455 1.25460 1.94376 1.17955 0.96464 0.85315 0.91019 1.19792 1.06725 0.96463 0.94518 1.20511 1.00772 1.00489 0.93748 1.20592 0.96533 0.93610 0.97368 1.20693 1.08656 1.02250 0.90896 1.17489 0.92410 0.90538 0.86583 1.44608 1.64428 1.20345 1.05948 1.20959 0.97776 0.85640 0.97259 1.19735 0.85167 0.84083 0.89580 1.90502 1.56682 1.55721 1.45218 1.41785 1.50896 1.16617 1.09200 1.19684 1.36658 1.03026 0.84143 0.87775 1.25311 0.96533 0.95903 0.99893 1.69598 1.39909 1.12729 1.31400 0.85875 0.78823 0.77760 0.81542 1.19770 1.20821 1.19752 1.19512 1.08158 0.95370 0.95559 1.20485 1.01677 0.99944 0.93664 0.93560 0.89182 0.93686 0.92486 0.91635 0.92115 0.85995 0.85699 0.74839 0.90618 0.90560 0.77125 0.91538 0.91474 0.91798 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.76 101.05 1.09 1.43 16 2 O -0.34 -4.28 8.66 -19.42 -0.17 -4.45 16 3 C 0.14 1.90 5.66 -39.25 -0.22 1.68 16 4 C -0.17 -2.20 5.90 -104.43 -0.62 -2.82 16 5 C -0.10 -0.99 9.79 36.00 0.35 -0.63 16 6 C -0.06 -0.78 9.69 -39.64 -0.38 -1.16 16 7 C -0.20 -2.83 9.31 -39.36 -0.37 -3.19 16 8 C 0.24 3.68 6.63 -83.81 -0.56 3.12 16 9 N -0.72 -12.32 5.60 -59.82 -0.34 -12.66 16 10 C 0.11 1.96 5.39 -5.19 -0.03 1.93 16 11 C 0.43 9.81 7.85 -10.99 -0.09 9.72 16 12 O -0.60 -15.54 15.24 5.55 0.08 -15.45 16 13 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 14 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 17 N -0.90 -23.67 13.05 55.50 0.72 -22.95 16 18 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.18 -2.68 5.91 -104.28 -0.62 -3.30 16 23 C -0.10 -1.36 9.35 36.01 0.34 -1.03 16 24 H 0.05 0.42 7.26 -51.93 -0.38 0.05 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.67 7.52 -51.93 -0.39 0.28 16 29 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.60 6.73 -52.49 -0.35 1.25 16 32 H 0.41 7.49 5.43 -40.82 -0.22 7.27 16 33 H 0.08 1.20 7.95 -51.93 -0.41 0.78 16 34 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 35 H 0.40 9.18 7.90 -40.82 -0.32 8.85 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.77 6.32 -51.93 -0.33 0.44 16 39 H 0.06 0.87 6.55 -51.93 -0.34 0.53 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -30.12 327.91 -6.38 -36.50 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.20 Total: 14.23 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.34 Total: -2.10 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.33 Total: -49.15 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.08 Total: -19.90 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.12 -6.38 -36.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175114869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.005 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds