Wall clock time and date at job start Mon Mar 30 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 116.99828 * 2 1 4 4 C 1.38820 * 120.01708 * 90.00157 * 3 2 1 5 5 C 1.50692 * 119.95334 * 0.27482 * 4 3 2 6 6 C 1.38175 * 120.08918 * 180.02562 * 4 3 2 7 7 C 1.38150 * 120.13139 * 0.02562 * 6 4 3 8 8 C 1.38936 * 120.03841 * 359.95615 * 7 6 4 9 9 N 1.39658 * 120.05198 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99923 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.47444 * 180.02562 * 10 9 8 12 12 O 1.21290 * 119.99672 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00190 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99958 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99823 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99920 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99863 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47334 * 60.00249 * 18 16 14 20 20 H 1.48502 * 109.47034 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47362 * 300.00323 * 18 16 14 22 22 C 1.38564 * 120.01746 * 269.96992 * 3 2 1 23 23 C 1.50699 * 120.06515 * 0.03023 * 22 3 2 24 24 H 1.08998 * 109.46932 * 59.99951 * 1 2 3 25 25 H 1.08996 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47467 * 300.00185 * 1 2 3 27 27 H 1.09002 * 109.47359 * 269.72877 * 5 4 3 28 28 H 1.08998 * 109.47844 * 29.72303 * 5 4 3 29 29 H 1.09001 * 109.47583 * 149.72768 * 5 4 3 30 30 H 1.08001 * 119.93092 * 179.97438 * 6 4 3 31 31 H 1.07998 * 119.98298 * 179.97438 * 7 6 4 32 32 H 0.96999 * 120.00714 * 179.97438 * 9 8 7 33 33 H 1.09005 * 109.46600 * 299.99502 * 10 9 8 34 34 H 1.09001 * 109.47435 * 59.99447 * 10 9 8 35 35 H 0.96997 * 120.00079 * 359.97438 * 13 11 10 36 36 H 0.96996 * 119.99832 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47247 * 269.94839 * 23 22 3 38 38 H 1.09000 * 109.47730 * 29.94674 * 23 22 3 39 39 H 1.08999 * 109.47303 * 149.95449 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3612 1.8296 1.2020 5 6 2.0245 1.1548 2.5066 6 6 2.9880 3.0610 1.2037 7 6 3.3025 3.6808 0.0098 8 6 2.9898 3.0662 -1.1963 9 7 3.3081 3.6922 -2.4035 10 6 3.9728 4.9978 -2.3986 11 6 4.2019 5.4502 -3.8177 12 8 3.8455 4.7506 -4.7422 13 7 4.8029 6.6320 -4.0595 14 6 5.0118 7.0434 -5.3506 15 1 4.6952 6.4201 -6.1738 16 6 5.6309 8.2621 -5.5999 17 7 6.0166 9.0202 -4.5982 18 14 5.9162 8.8222 -7.3590 19 1 4.6123 8.9319 -8.0612 20 1 6.5880 10.1465 -7.3540 21 1 6.7743 7.8337 -8.0602 22 6 2.3612 1.8282 -1.1998 23 6 2.0200 1.1585 -2.5060 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.0276 1.4586 2.8262 28 1 2.0494 0.0733 2.3735 29 1 2.7528 1.4444 3.2642 30 1 3.2318 3.5403 2.1404 31 1 3.7921 4.6434 0.0140 32 1 3.0898 3.2624 -3.2452 33 1 3.3438 5.7237 -1.8833 34 1 4.9301 4.9162 -1.8838 35 1 5.0876 7.1916 -3.3202 36 1 6.4491 9.8708 -4.7723 37 1 2.8536 0.5308 -2.8211 38 1 1.1300 0.5426 -2.3770 39 1 1.8298 1.9176 -3.2647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175114869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:10 Heat of formation + Delta-G solvation = -76.003163 kcal Electronic energy + Delta-G solvation = -21042.938048 eV Core-core repulsion = 17756.598051 eV Total energy + Delta-G solvation = -3286.339997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29861 -40.29777 -38.64127 -36.43912 -35.85082 -33.75735 -33.30808 -31.69880 -29.26212 -28.74289 -27.09376 -26.66335 -25.64246 -22.75295 -21.49625 -21.14638 -20.05002 -19.03558 -18.06018 -17.48860 -16.74170 -16.60540 -16.31920 -16.10171 -16.04601 -15.63167 -15.25675 -14.73049 -14.48965 -14.21439 -14.11702 -14.01399 -13.89727 -13.54432 -13.30110 -12.96724 -12.90771 -12.78609 -12.50400 -12.49114 -12.34535 -12.14783 -11.87554 -11.58475 -10.86107 -10.74318 -10.55164 -10.10939 -9.46358 -8.52778 -8.23357 -6.02633 0.33588 0.61494 1.36483 1.41026 1.51512 1.90966 2.17911 2.38067 2.63446 3.09395 3.14559 3.17635 3.92450 4.04754 4.13270 4.18217 4.39017 4.43380 4.45208 4.47591 4.51706 4.60529 4.65235 4.71705 4.73888 4.79992 4.90796 4.92973 5.19356 5.28908 5.35783 5.40147 5.50276 5.71894 5.74858 5.89369 6.32074 6.49975 6.61646 6.77632 7.03038 7.43603 7.95872 8.63863 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038725 B = 0.003198 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.864666 B = 8752.454599 C = 9379.139761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.128 3.872 4 C -0.174 4.174 5 C -0.096 4.096 6 C -0.061 4.061 7 C -0.208 4.208 8 C 0.214 3.786 9 N -0.734 5.734 10 C 0.128 3.872 11 C 0.429 3.571 12 O -0.631 6.631 13 N -0.558 5.558 14 C -0.340 4.340 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.914 5.914 18 Si 0.994 3.006 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.198 4.198 23 C -0.097 4.097 24 H 0.043 0.957 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.403 0.597 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.400 0.600 36 H 0.280 0.720 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 -11.657 14.322 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.265 6.265 3 C 0.084 3.916 4 C -0.177 4.177 5 C -0.152 4.152 6 C -0.080 4.080 7 C -0.231 4.231 8 C 0.110 3.890 9 N -0.366 5.366 10 C 0.000 4.000 11 C 0.216 3.784 12 O -0.519 6.519 13 N -0.194 5.194 14 C -0.470 4.470 15 H 0.099 0.901 16 C -0.208 4.208 17 N -0.554 5.554 18 Si 0.817 3.183 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.197 1.197 22 C -0.203 4.203 23 C -0.154 4.154 24 H 0.062 0.938 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.241 0.759 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.141 -11.889 13.723 19.898 hybrid contribution 0.213 0.779 -1.120 1.381 sum -7.928 -11.110 12.603 18.577 Atomic orbital electron populations 1.23145 0.77604 1.04481 1.01013 1.85921 1.21204 1.24947 1.94427 1.18138 0.96671 0.85685 0.91149 1.20197 1.05614 0.96532 0.95318 1.20551 1.02043 1.00033 0.92618 1.20936 0.95564 0.93456 0.97997 1.20930 1.08593 1.02748 0.90844 1.17687 0.93708 0.91163 0.86422 1.44557 1.65538 1.20272 1.06239 1.20836 0.99359 0.86451 0.93344 1.20650 0.83222 0.82970 0.91560 1.90475 1.57623 1.56560 1.47257 1.41814 1.51629 1.17383 1.08599 1.19664 1.38603 1.03865 0.84847 0.90065 1.26065 0.95652 0.95389 1.03724 1.69652 1.39827 1.12996 1.32920 0.84976 0.78679 0.77698 0.76936 1.19636 1.19338 1.19663 1.19717 1.08616 0.95596 0.96357 1.20442 1.02048 0.99662 0.93210 0.93845 0.86778 0.92750 0.91078 0.91933 0.90483 0.83079 0.84669 0.75901 0.88505 0.88582 0.76526 0.90997 0.91853 0.90580 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.76 113.37 1.22 1.74 16 2 O -0.35 -8.37 8.66 -92.39 -0.80 -9.17 16 3 C 0.13 3.40 5.66 22.49 0.13 3.52 16 4 C -0.17 -4.05 5.90 -19.74 -0.12 -4.17 16 5 C -0.10 -1.63 9.79 71.23 0.70 -0.93 16 6 C -0.06 -1.37 9.69 22.23 0.22 -1.15 16 7 C -0.21 -5.47 9.31 22.42 0.21 -5.26 16 8 C 0.21 6.57 6.63 38.21 0.25 6.82 16 9 N -0.73 -25.17 5.60 -343.17 -1.92 -27.09 16 10 C 0.13 4.41 5.39 85.63 0.46 4.88 16 11 C 0.43 19.93 7.85 87.66 0.69 20.62 16 12 O -0.63 -34.01 15.24 -3.06 -0.05 -34.06 16 13 N -0.56 -27.84 5.29 -306.98 -1.62 -29.46 16 14 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 15 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 16 C -0.01 -0.38 5.50 84.93 0.47 0.08 16 17 N -0.91 -47.95 13.05 21.66 0.28 -47.67 16 18 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 22 C -0.20 -5.81 5.91 -19.64 -0.12 -5.92 16 23 C -0.10 -2.66 9.35 71.24 0.67 -1.99 16 24 H 0.04 0.74 7.26 -2.39 -0.02 0.73 16 25 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.11 7.52 -2.39 -0.02 1.10 16 29 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 30 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 31 H 0.14 3.17 6.73 -2.91 -0.02 3.15 16 32 H 0.40 15.15 5.43 -92.71 -0.50 14.65 16 33 H 0.10 2.93 7.95 -2.38 -0.02 2.91 16 34 H 0.10 2.93 7.95 -2.39 -0.02 2.92 16 35 H 0.40 18.74 7.90 -92.71 -0.73 18.00 16 36 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.82 6.32 -2.39 -0.02 1.81 16 39 H 0.05 1.53 6.55 -2.39 -0.02 1.51 16 Total: -1.00 -65.09 327.91 3.35 -61.74 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -0.15 Total: 41.66 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.59 Total: 0.16 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -3.26 Total: -104.22 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.85 Total: -43.22 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -65.09 3.35 -61.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175114869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.262 kcal (2) G-P(sol) polarization free energy of solvation -65.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds