Wall clock time and date at job start Mon Mar 30 2020 23:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.99878 * 2 1 4 4 C 1.38212 * 119.99786 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00053 * 359.95087 * 4 3 2 6 6 C 1.50703 * 119.99963 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.46785 * 159.98225 * 6 5 4 8 8 C 1.53000 * 109.47232 * 279.98548 * 6 5 4 9 9 N 1.46906 * 109.46635 * 39.98462 * 6 5 4 10 10 C 1.46902 * 110.99638 * 155.00128 * 9 6 5 11 11 C 1.53006 * 109.46958 * 179.97438 * 10 9 6 12 12 C 1.50706 * 109.46812 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00028 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99510 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00284 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99545 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46924 * 90.00472 * 16 14 12 18 18 H 1.48500 * 109.47206 * 209.99912 * 16 14 12 19 19 H 1.48496 * 109.47458 * 329.99986 * 16 14 12 20 20 C 1.38208 * 120.00070 * 359.97438 * 5 4 3 21 21 C 1.38210 * 120.00055 * 180.16792 * 2 1 3 22 22 N 1.48024 * 120.00122 * 0.04259 * 21 2 1 23 23 O 1.21801 * 119.99854 * 186.59357 * 22 21 2 24 24 O 1.21793 * 119.99804 * 6.58783 * 22 21 2 25 25 H 1.08998 * 109.47083 * 96.84752 * 1 2 3 26 26 H 1.09004 * 109.47057 * 216.85086 * 1 2 3 27 27 H 1.09007 * 109.47198 * 336.84550 * 1 2 3 28 28 H 1.08001 * 120.00239 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.99930 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.46607 * 299.99628 * 8 6 5 31 31 H 1.08995 * 109.47498 * 60.00114 * 8 6 5 32 32 H 1.08998 * 109.46784 * 179.97438 * 8 6 5 33 33 H 1.00901 * 110.99550 * 278.94652 * 9 6 5 34 34 H 1.09002 * 109.46956 * 299.99300 * 10 9 6 35 35 H 1.08994 * 109.47379 * 59.99562 * 10 9 6 36 36 H 1.09002 * 109.46848 * 299.99528 * 11 10 9 37 37 H 1.08999 * 109.46876 * 59.99615 * 11 10 9 38 38 H 0.96993 * 120.00078 * 179.97438 * 15 14 12 39 39 H 1.08003 * 119.99942 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 -0.0012 7 1 6.1422 -0.9653 0.3511 8 6 6.2876 0.2489 -1.4225 9 7 6.2690 1.0620 0.8875 10 6 7.6167 0.7529 1.3836 11 6 8.0925 1.8794 2.3031 12 6 9.4749 1.5619 2.8124 13 1 9.9649 0.6479 2.5108 14 6 10.1141 2.4384 3.6635 15 7 9.5173 3.5512 4.0311 16 14 11.8273 2.0446 4.2954 17 1 12.8393 2.6019 3.3623 18 1 12.0094 2.6470 5.6404 19 1 11.9952 0.5719 4.3857 20 6 3.5806 -1.1969 0.0015 21 6 2.1980 -1.1969 -0.0035 22 7 1.4580 -2.4789 -0.0082 23 8 2.0609 -3.5306 0.1098 24 8 0.2461 -2.4819 -0.1300 25 1 -0.3633 -0.1225 -1.0203 26 1 -0.3633 -0.8224 0.6163 27 1 -0.3634 0.9449 0.4041 28 1 1.6583 2.1327 0.0004 29 1 4.1204 2.1327 -0.0010 30 1 5.9238 -0.5391 -2.0818 31 1 5.9241 1.2141 -1.7748 32 1 7.3776 0.2493 -1.4231 33 1 6.2510 1.9582 0.4242 34 1 7.5932 -0.1846 1.9392 35 1 8.3013 0.6586 0.5407 36 1 8.1162 2.8167 1.7471 37 1 7.4079 1.9741 3.1459 38 1 9.9668 4.1676 4.6301 39 1 4.1207 -2.1323 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181840541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:39 Heat of formation + Delta-G solvation = 7.811720 kcal Electronic energy + Delta-G solvation = -20868.450625 eV Core-core repulsion = 17585.745114 eV Total energy + Delta-G solvation = -3282.705511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.32502 -39.99167 -37.13167 -36.64767 -33.90275 -32.64269 -32.04269 -30.74833 -28.18492 -27.64488 -26.04584 -24.23989 -23.05787 -22.71123 -21.04394 -20.72250 -18.76292 -18.28712 -17.66951 -16.46647 -16.34093 -15.91308 -15.27329 -14.69089 -14.49525 -14.30259 -14.07242 -13.93245 -13.20636 -12.89807 -12.73846 -12.49403 -12.46724 -12.22660 -12.04955 -11.69255 -11.46633 -11.22551 -11.18759 -11.08164 -11.00458 -10.76683 -10.58791 -10.15653 -9.70493 -9.52701 -9.25850 -9.04359 -8.43134 -8.05666 -6.07076 -4.10052 -0.20943 0.78542 1.28595 1.34466 3.11981 3.27297 3.34100 3.37195 4.06541 4.18630 4.35430 4.45934 4.63148 4.73590 4.80059 4.89656 5.11284 5.18214 5.23568 5.29341 5.31349 5.36279 5.46496 5.68303 5.70727 5.80909 5.89161 5.95280 6.04150 6.19026 6.20334 6.28864 6.46742 6.84170 7.26443 7.58467 7.59389 7.66461 7.79664 7.97216 8.34005 8.96936 9.54378 11.04286 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029100 B = 0.003051 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.976365 B = 9174.811893 C = 9396.606354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.025 4.025 3 C -0.124 4.124 4 C -0.039 4.039 5 C -0.062 4.062 6 C 0.118 3.882 7 H 0.091 0.909 8 C -0.178 4.178 9 N -0.684 5.684 10 C 0.066 3.934 11 C 0.026 3.974 12 C -0.524 4.524 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.051 4.051 21 C -0.050 4.050 22 N 0.035 4.965 23 O -0.172 6.172 24 O -0.166 6.166 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.338 0.662 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.014 0.986 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.589 -4.925 -11.559 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.057 4.057 5 C -0.063 4.063 6 C 0.007 3.993 7 H 0.109 0.891 8 C -0.237 4.237 9 N -0.314 5.314 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.070 4.070 21 C -0.133 4.133 22 N 0.551 4.449 23 O -0.385 6.385 24 O -0.379 6.379 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.156 0.844 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.517 -4.432 -10.871 19.458 hybrid contribution 1.386 -0.280 -0.347 1.456 sum -14.131 -4.711 -11.219 18.648 Atomic orbital electron populations 1.21261 0.88808 1.04306 1.04250 1.19841 0.97835 0.90586 0.94377 1.21146 0.94240 0.96978 1.01891 1.21474 0.93711 0.99081 0.91452 1.19939 0.96633 0.91443 0.98332 1.20480 0.88571 0.98129 0.92127 0.89111 1.22498 1.02265 1.02116 0.96781 1.60716 1.28011 1.03713 1.38973 1.22228 0.84910 1.01521 0.97514 1.19066 0.95725 0.92137 0.94235 1.21153 1.00941 1.05819 1.28330 0.92712 1.24997 0.98012 0.95056 0.96238 1.69960 1.37790 1.10594 1.34849 0.86581 0.84512 0.78587 0.78247 1.20675 1.21154 1.19832 1.20863 0.90737 1.00377 0.95053 1.20858 0.92299 0.82944 1.17236 1.43604 1.01029 1.02905 0.97389 1.94544 1.70107 1.20195 1.53625 1.94444 0.96523 1.93839 1.53082 0.89659 0.88633 0.90918 0.83730 0.83849 0.92230 0.92216 0.91384 0.84387 0.92111 0.96156 0.96796 0.95648 0.92926 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.67 36.00 0.31 -0.78 16 2 C -0.02 -0.26 5.88 -104.63 -0.62 -0.87 16 3 C -0.12 -1.12 9.68 -39.58 -0.38 -1.51 16 4 C -0.04 -0.39 9.33 -39.58 -0.37 -0.76 16 5 C -0.06 -0.71 4.96 -104.62 -0.52 -1.22 16 6 C 0.12 1.44 2.79 -68.86 -0.19 1.25 16 7 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 8 C -0.18 -1.87 9.14 37.16 0.34 -1.53 16 9 N -0.68 -10.50 5.70 -107.94 -0.62 -11.12 16 10 C 0.07 1.27 5.42 -3.82 -0.02 1.25 16 11 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 12 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.05 -0.59 9.18 -39.58 -0.36 -0.96 16 21 C -0.05 -0.61 6.83 -79.95 -0.55 -1.15 16 22 N 0.04 0.48 4.45 33.96 0.15 0.63 16 23 O -0.17 -2.52 18.47 -29.46 -0.54 -3.06 16 24 O -0.17 -2.21 15.37 -29.46 -0.45 -2.67 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 0.91 5.89 -51.93 -0.31 0.61 16 27 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 28 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 29 H 0.14 1.31 7.25 -52.49 -0.38 0.93 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 33 H 0.34 4.84 7.82 -39.29 -0.31 4.53 16 34 H 0.06 1.19 8.06 -51.93 -0.42 0.78 16 35 H 0.02 0.38 7.43 -51.93 -0.39 -0.01 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.15 1.63 7.60 -52.48 -0.40 1.23 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -30.44 331.81 -9.13 -39.57 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.48 Total: -0.07 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.91 Total: -18.96 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.27 Total: -36.04 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -1.00 Total: -5.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.44 -9.13 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181840541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.385 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds