Wall clock time and date at job start Mon Mar 30 2020 23:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.99878 * 2 1 4 4 C 1.38212 * 119.99786 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00053 * 359.95087 * 4 3 2 6 6 C 1.50703 * 119.99963 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.46785 * 159.98225 * 6 5 4 8 8 C 1.53000 * 109.47232 * 279.98548 * 6 5 4 9 9 N 1.46906 * 109.46635 * 39.98462 * 6 5 4 10 10 C 1.46902 * 110.99638 * 155.00128 * 9 6 5 11 11 C 1.53006 * 109.46958 * 179.97438 * 10 9 6 12 12 C 1.50706 * 109.46812 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00028 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99510 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00284 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99545 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46924 * 90.00472 * 16 14 12 18 18 H 1.48500 * 109.47206 * 209.99912 * 16 14 12 19 19 H 1.48496 * 109.47458 * 329.99986 * 16 14 12 20 20 C 1.38208 * 120.00070 * 359.97438 * 5 4 3 21 21 C 1.38210 * 120.00055 * 180.16792 * 2 1 3 22 22 N 1.48024 * 120.00122 * 0.04259 * 21 2 1 23 23 O 1.21801 * 119.99854 * 186.59357 * 22 21 2 24 24 O 1.21793 * 119.99804 * 6.58783 * 22 21 2 25 25 H 1.08998 * 109.47083 * 96.84752 * 1 2 3 26 26 H 1.09004 * 109.47057 * 216.85086 * 1 2 3 27 27 H 1.09007 * 109.47198 * 336.84550 * 1 2 3 28 28 H 1.08001 * 120.00239 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.99930 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.46607 * 299.99628 * 8 6 5 31 31 H 1.08995 * 109.47498 * 60.00114 * 8 6 5 32 32 H 1.08998 * 109.46784 * 179.97438 * 8 6 5 33 33 H 1.00901 * 110.99550 * 278.94652 * 9 6 5 34 34 H 1.09002 * 109.46956 * 299.99300 * 10 9 6 35 35 H 1.08994 * 109.47379 * 59.99562 * 10 9 6 36 36 H 1.09002 * 109.46848 * 299.99528 * 11 10 9 37 37 H 1.08999 * 109.46876 * 59.99615 * 11 10 9 38 38 H 0.96993 * 120.00078 * 179.97438 * 15 14 12 39 39 H 1.08003 * 119.99942 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 -0.0012 7 1 6.1422 -0.9653 0.3511 8 6 6.2876 0.2489 -1.4225 9 7 6.2690 1.0620 0.8875 10 6 7.6167 0.7529 1.3836 11 6 8.0925 1.8794 2.3031 12 6 9.4749 1.5619 2.8124 13 1 9.9649 0.6479 2.5108 14 6 10.1141 2.4384 3.6635 15 7 9.5173 3.5512 4.0311 16 14 11.8273 2.0446 4.2954 17 1 12.8393 2.6019 3.3623 18 1 12.0094 2.6470 5.6404 19 1 11.9952 0.5719 4.3857 20 6 3.5806 -1.1969 0.0015 21 6 2.1980 -1.1969 -0.0035 22 7 1.4580 -2.4789 -0.0082 23 8 2.0609 -3.5306 0.1098 24 8 0.2461 -2.4819 -0.1300 25 1 -0.3633 -0.1225 -1.0203 26 1 -0.3633 -0.8224 0.6163 27 1 -0.3634 0.9449 0.4041 28 1 1.6583 2.1327 0.0004 29 1 4.1204 2.1327 -0.0010 30 1 5.9238 -0.5391 -2.0818 31 1 5.9241 1.2141 -1.7748 32 1 7.3776 0.2493 -1.4231 33 1 6.2510 1.9582 0.4242 34 1 7.5932 -0.1846 1.9392 35 1 8.3013 0.6586 0.5407 36 1 8.1162 2.8167 1.7471 37 1 7.4079 1.9741 3.1459 38 1 9.9668 4.1676 4.6301 39 1 4.1207 -2.1323 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181840541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:38 Heat of formation + Delta-G solvation = -9.011223 kcal Electronic energy + Delta-G solvation = -20869.180122 eV Core-core repulsion = 17585.745114 eV Total energy + Delta-G solvation = -3283.435009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32671 -40.87712 -38.25350 -37.72229 -35.55341 -34.07628 -32.90206 -32.07163 -29.64232 -28.56027 -27.00621 -25.96615 -23.97423 -23.68334 -22.43974 -22.02955 -19.77920 -19.29028 -18.68656 -18.47774 -17.27143 -16.88209 -16.57327 -16.23340 -15.76686 -15.40644 -14.97493 -14.82279 -14.30112 -14.18963 -14.07923 -13.68788 -13.39017 -13.19904 -13.08162 -13.01142 -12.86110 -12.62705 -12.51607 -12.40246 -12.23582 -12.02751 -11.98427 -11.68186 -11.40202 -11.26191 -10.56563 -10.52652 -9.92266 -9.33212 -8.21018 -6.31633 -1.17421 -0.03092 0.34203 0.40012 1.40384 1.41441 1.52315 2.28286 2.40131 3.10347 3.13137 3.39685 3.48278 3.74491 3.91247 3.94004 3.99196 4.21907 4.30644 4.48765 4.50630 4.56908 4.62374 4.69613 4.72679 4.84977 4.93309 5.05741 5.06984 5.11680 5.17716 5.18607 5.31598 5.46058 5.60991 5.68466 5.78330 6.10282 6.24114 6.51034 6.53797 6.85999 7.37751 8.90829 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029100 B = 0.003051 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.976365 B = 9174.811893 C = 9396.606354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.024 4.024 3 C -0.114 4.114 4 C -0.039 4.039 5 C -0.070 4.070 6 C 0.121 3.879 7 H 0.084 0.916 8 C -0.172 4.172 9 N -0.687 5.687 10 C 0.086 3.914 11 C 0.032 3.968 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.058 4.058 21 C -0.068 4.068 22 N 0.035 4.965 23 O -0.215 6.215 24 O -0.152 6.152 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.180 0.820 29 H 0.156 0.844 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.345 0.655 34 H 0.054 0.946 35 H 0.027 0.973 36 H -0.004 1.004 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 -4.279 -12.361 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.025 4.025 3 C -0.132 4.132 4 C -0.058 4.058 5 C -0.071 4.071 6 C 0.011 3.989 7 H 0.102 0.898 8 C -0.230 4.230 9 N -0.318 5.318 10 C -0.043 4.043 11 C -0.005 4.005 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.078 4.078 21 C -0.152 4.152 22 N 0.547 4.453 23 O -0.418 6.418 24 O -0.371 6.371 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.197 0.803 29 H 0.174 0.826 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.014 0.986 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.856 -3.856 -11.684 20.070 hybrid contribution 1.378 -0.387 -0.120 1.436 sum -14.478 -4.243 -11.804 19.156 Atomic orbital electron populations 1.21322 0.87323 1.05247 1.04704 1.20212 0.99009 0.90160 0.93156 1.21508 0.93791 0.97773 1.00151 1.21719 0.94505 0.98955 0.90576 1.19816 0.95895 0.91915 0.99498 1.20447 0.89298 0.96622 0.92540 0.89775 1.22425 1.01594 1.03300 0.95698 1.60553 1.25565 1.05045 1.40646 1.21788 0.87046 0.98804 0.96670 1.18909 0.94319 0.93363 0.93916 1.21628 1.02244 1.05985 1.28455 0.92233 1.25916 1.02290 0.94865 0.96500 1.70085 1.39651 1.11660 1.35613 0.85485 0.79420 0.78749 0.77624 1.19687 1.20898 1.18898 1.20880 0.90848 1.00588 0.95469 1.21056 0.92541 0.82662 1.18903 1.43849 1.01060 1.03351 0.97029 1.94543 1.70224 1.21113 1.55929 1.94414 0.96803 1.93989 1.51928 0.88682 0.89969 0.88264 0.80281 0.82649 0.90879 0.91034 0.92284 0.83582 0.92705 0.95466 0.98557 0.98823 0.92773 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.67 71.24 0.62 -1.20 16 2 C -0.02 -0.44 5.88 -19.87 -0.12 -0.55 16 3 C -0.11 -1.70 9.68 22.27 0.22 -1.48 16 4 C -0.04 -0.70 9.33 22.27 0.21 -0.50 16 5 C -0.07 -1.50 4.96 -19.87 -0.10 -1.60 16 6 C 0.12 2.85 2.79 44.17 0.12 2.97 16 7 H 0.08 2.09 7.66 -2.39 -0.02 2.08 16 8 C -0.17 -3.33 9.14 71.98 0.66 -2.67 16 9 N -0.69 -20.61 5.70 -495.43 -2.83 -23.44 16 10 C 0.09 3.28 5.42 86.30 0.47 3.75 16 11 C 0.03 1.63 5.23 29.85 0.16 1.79 16 12 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 14 C 0.00 0.14 5.46 84.66 0.46 0.60 16 15 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 16 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 C -0.06 -1.34 9.18 22.27 0.20 -1.13 16 21 C -0.07 -1.60 6.83 36.37 0.25 -1.35 16 22 N 0.04 0.97 4.45 -46.46 -0.21 0.76 16 23 O -0.21 -6.54 18.47 18.89 0.35 -6.19 16 24 O -0.15 -3.98 15.37 18.90 0.29 -3.69 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.42 5.89 -2.39 -0.01 1.41 16 27 H 0.10 0.87 8.04 -2.38 -0.02 0.85 16 28 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.16 2.41 7.25 -2.91 -0.02 2.38 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.06 1.26 7.45 -2.39 -0.02 1.24 16 33 H 0.35 9.51 7.82 -89.69 -0.70 8.81 16 34 H 0.05 2.16 8.06 -2.39 -0.02 2.14 16 35 H 0.03 1.00 7.43 -2.39 -0.02 0.98 16 36 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.15 3.32 7.60 -2.91 -0.02 3.30 16 Total: -1.00 -66.22 331.81 3.65 -62.57 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.36 Total: 10.98 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 3.38 Total: -31.28 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -2.75 Total: -77.83 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.64 Total: -9.88 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.22 3.65 -62.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181840541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.556 kcal (2) G-P(sol) polarization free energy of solvation -66.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds