Wall clock time and date at job start Mon Mar 30 2020 23:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99911 * 2 1 4 4 C 1.38212 * 119.99840 * 179.81522 * 3 2 1 5 5 C 1.38251 * 120.00194 * 0.41171 * 4 3 2 6 6 N 1.48022 * 120.00307 * 179.79365 * 5 4 3 7 7 O 1.21796 * 120.00264 * 180.02562 * 6 5 4 8 8 O 1.21800 * 119.99599 * 0.02562 * 6 5 4 9 9 C 1.38219 * 119.99823 * 359.81696 * 5 4 3 10 10 C 1.38208 * 119.99898 * 180.27102 * 2 1 3 11 11 C 1.50699 * 120.00511 * 359.97438 * 10 2 1 12 12 H 1.09010 * 109.47107 * 44.46076 * 11 10 2 13 13 C 1.52997 * 109.47748 * 164.45999 * 11 10 2 14 14 N 1.46901 * 109.46933 * 284.46476 * 11 10 2 15 15 C 1.46896 * 110.99884 * 294.93228 * 14 11 10 16 16 C 1.46906 * 111.00008 * 170.98117 * 14 11 10 17 17 C 1.50694 * 109.47120 * 189.99817 * 16 14 11 18 18 H 1.08001 * 120.00037 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99940 * 180.02562 * 17 16 14 20 20 N 1.31509 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99834 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47018 * 120.00041 * 21 19 17 24 24 H 1.48498 * 109.47297 * 239.99903 * 21 19 17 25 25 H 1.09001 * 109.47081 * 269.72296 * 1 2 3 26 26 H 1.09008 * 109.47272 * 149.73148 * 1 2 3 27 27 H 1.09001 * 109.47585 * 29.72600 * 1 2 3 28 28 H 1.08000 * 120.00080 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.99601 * 180.21228 * 4 3 2 30 30 H 1.08000 * 119.99796 * 179.97438 * 9 5 4 31 31 H 1.08996 * 109.47580 * 179.97438 * 13 11 10 32 32 H 1.09001 * 109.47139 * 300.00570 * 13 11 10 33 33 H 1.09010 * 109.46754 * 59.99860 * 13 11 10 34 34 H 1.09008 * 109.47213 * 53.32651 * 15 14 11 35 35 H 1.08999 * 109.47196 * 173.32069 * 15 14 11 36 36 H 1.08993 * 109.47473 * 293.32744 * 15 14 11 37 37 H 1.08999 * 109.46989 * 309.99627 * 16 14 11 38 38 H 1.08997 * 109.47100 * 69.99934 * 16 14 11 39 39 H 0.97007 * 120.00037 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0039 5 6 4.2717 0.0001 -0.0009 6 7 5.7519 0.0001 -0.0014 7 8 6.3609 -1.0547 -0.0060 8 8 6.3608 1.0549 0.0029 9 6 3.5806 -1.1969 -0.0057 10 6 2.1980 -1.1969 -0.0057 11 6 1.4446 -2.5020 -0.0113 12 1 0.6274 -2.4468 -0.7306 13 6 2.3930 -3.6369 -0.4032 14 7 0.9007 -2.7592 1.3289 15 6 1.9797 -2.9595 2.3054 16 6 -0.0155 -3.9074 1.3139 17 6 -0.7375 -3.9912 2.6339 18 1 -0.5363 -3.2640 3.4066 19 6 -1.6551 -4.9963 2.8552 20 7 -1.8996 -5.8822 1.9145 21 14 -2.5496 -5.1006 4.4917 22 1 -2.0984 -3.9945 5.3739 23 1 -4.0126 -4.9863 4.2643 24 1 -2.2494 -6.4036 5.1378 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 -0.8876 -0.5180 27 1 -0.3634 0.8924 -0.5096 28 1 1.6582 2.1327 -0.0004 29 1 4.1203 2.1327 0.0073 30 1 4.1206 -2.1322 -0.0098 31 1 1.8481 -4.5809 -0.4068 32 1 2.7966 -3.4460 -1.3976 33 1 3.2102 -3.6921 0.3161 34 1 2.6702 -2.1171 2.2618 35 1 1.5551 -3.0296 3.3068 36 1 2.5146 -3.8800 2.0722 37 1 -0.7411 -3.7827 0.5101 38 1 0.5526 -4.8234 1.1517 39 1 -2.5449 -6.5896 2.0703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182834755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:49 Heat of formation + Delta-G solvation = 21.867988 kcal Electronic energy + Delta-G solvation = -21896.629654 eV Core-core repulsion = 18614.533668 eV Total energy + Delta-G solvation = -3282.095985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.14784 -40.16849 -37.24502 -36.51732 -33.49186 -33.08169 -31.75853 -29.21226 -28.33034 -27.24191 -25.71265 -24.97655 -23.93247 -21.90012 -21.39653 -19.81802 -18.76159 -18.35536 -17.49352 -16.52372 -15.89876 -15.79390 -15.27882 -14.67332 -14.35217 -14.15319 -13.99639 -13.56266 -13.14239 -12.43203 -12.30924 -12.24378 -12.11832 -11.95143 -11.69134 -11.58392 -11.30048 -11.18639 -11.14869 -11.12591 -11.00328 -10.79012 -10.57886 -10.53477 -9.95993 -9.37517 -9.32140 -9.06276 -8.53332 -7.41742 -6.12814 -4.14365 -0.11347 0.92848 1.39929 1.45787 3.24166 3.24413 3.32477 3.36509 4.29300 4.35884 4.41859 4.64910 4.75726 4.80870 4.93917 5.15176 5.23858 5.33538 5.43170 5.51409 5.57635 5.71614 5.77865 5.85028 5.88719 5.97163 6.07307 6.12645 6.23813 6.28483 6.34875 6.49643 6.58023 6.63461 7.11693 7.22122 7.66850 7.68030 7.91117 8.03297 8.39280 8.93241 9.50538 10.97910 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.004258 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.525341 B = 6573.692180 C = 6914.285186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.004 4.004 3 C -0.126 4.126 4 C -0.059 4.059 5 C -0.058 4.058 6 N 0.034 4.966 7 O -0.168 6.168 8 O -0.172 6.172 9 C -0.050 4.050 10 C -0.061 4.061 11 C 0.114 3.886 12 H 0.095 0.905 13 C -0.192 4.192 14 N -0.525 5.525 15 C 0.033 3.967 16 C 0.193 3.807 17 C -0.508 4.508 18 H 0.063 0.937 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.021 0.979 37 H 0.030 0.970 38 H -0.003 1.003 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 11.941 -5.728 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.004 4.004 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.141 4.141 6 N 0.552 4.448 7 O -0.383 6.383 8 O -0.386 6.386 9 C -0.070 4.070 10 C -0.063 4.063 11 C 0.005 3.995 12 H 0.113 0.887 13 C -0.250 4.250 14 N -0.249 5.249 15 C -0.115 4.115 16 C 0.068 3.932 17 C -0.547 4.547 18 H 0.082 0.918 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.014 0.986 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.895 12.184 -5.609 14.652 hybrid contribution 0.445 -0.921 0.642 1.207 sum 6.341 11.263 -4.968 13.847 Atomic orbital electron populations 1.20957 0.89077 1.03033 1.04497 1.20339 0.97883 0.91821 0.90401 1.21077 0.92305 0.98786 1.02301 1.20941 0.94730 0.96717 0.95482 1.21021 0.78646 0.97114 1.17357 1.43661 1.03891 1.00248 0.97044 1.94534 1.69303 1.20738 1.53719 1.94499 1.69364 1.20820 1.53964 1.21110 0.94454 0.97101 0.94302 1.19897 0.91383 0.96296 0.98692 1.20660 0.95427 0.88910 0.94482 0.88688 1.22592 1.00713 1.00681 1.01043 1.62424 1.16156 1.44275 1.02002 1.22249 0.93408 0.97862 0.98006 1.19781 0.90019 0.85170 0.98181 1.21156 1.22125 1.11801 0.99596 0.91847 1.24967 0.96934 0.95569 0.97000 1.69955 1.34866 1.15798 1.33064 0.86463 0.79478 0.77906 0.83704 1.19692 1.20988 1.21087 0.88679 0.89971 0.91669 0.83811 0.83464 0.82953 0.90928 0.92665 0.92045 0.94119 0.90734 0.96067 0.95203 0.98559 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.53 36.00 0.34 -1.00 16 2 C 0.00 -0.04 5.88 -104.63 -0.62 -0.66 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.06 -0.66 9.55 -39.59 -0.38 -1.04 16 5 C -0.06 -0.79 6.85 -79.95 -0.55 -1.33 16 6 N 0.03 0.52 4.45 33.96 0.15 0.67 16 7 O -0.17 -2.68 18.45 -29.46 -0.54 -3.23 16 8 O -0.17 -2.61 18.45 -29.46 -0.54 -3.15 16 9 C -0.05 -0.68 7.81 -39.58 -0.31 -0.99 16 10 C -0.06 -0.83 4.33 -104.63 -0.45 -1.28 16 11 C 0.11 1.76 1.85 -68.87 -0.13 1.63 16 12 H 0.10 1.45 6.46 -51.92 -0.34 1.12 16 13 C -0.19 -2.83 7.29 37.16 0.27 -2.56 16 14 N -0.53 -9.92 4.61 -237.73 -1.10 -11.02 16 15 C 0.03 0.61 8.41 60.06 0.51 1.11 16 16 C 0.19 4.55 4.27 -4.98 -0.02 4.53 16 17 C -0.51 -13.34 8.55 -34.44 -0.29 -13.63 16 18 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 21 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.08 1.01 6.23 -51.92 -0.32 0.69 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.15 1.38 7.61 -52.48 -0.40 0.98 16 30 H 0.15 2.06 5.51 -52.49 -0.29 1.77 16 31 H 0.07 1.20 6.88 -51.93 -0.36 0.84 16 32 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.06 0.89 5.18 -51.92 -0.27 0.62 16 34 H 0.04 0.67 6.46 -51.92 -0.34 0.33 16 35 H 0.07 1.47 6.94 -51.93 -0.36 1.11 16 36 H 0.02 0.38 6.61 -51.93 -0.34 0.04 16 37 H 0.03 0.75 7.94 -51.93 -0.41 0.34 16 38 H 0.00 -0.09 7.01 -51.93 -0.36 -0.45 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -28.68 320.21 -8.58 -37.26 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.98 Total: -0.99 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.11 Total: -15.45 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.21 Total: -35.04 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.09 Total: -6.38 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.68 -8.58 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182834755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.129 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds