Wall clock time and date at job start Mon Mar 30 2020 23:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99911 * 2 1 4 4 C 1.38212 * 119.99840 * 179.81522 * 3 2 1 5 5 C 1.38251 * 120.00194 * 0.41171 * 4 3 2 6 6 N 1.48022 * 120.00307 * 179.79365 * 5 4 3 7 7 O 1.21796 * 120.00264 * 180.02562 * 6 5 4 8 8 O 1.21800 * 119.99599 * 0.02562 * 6 5 4 9 9 C 1.38219 * 119.99823 * 359.81696 * 5 4 3 10 10 C 1.38208 * 119.99898 * 180.27102 * 2 1 3 11 11 C 1.50699 * 120.00511 * 359.97438 * 10 2 1 12 12 H 1.09010 * 109.47107 * 44.46076 * 11 10 2 13 13 C 1.52997 * 109.47748 * 164.45999 * 11 10 2 14 14 N 1.46901 * 109.46933 * 284.46476 * 11 10 2 15 15 C 1.46896 * 110.99884 * 294.93228 * 14 11 10 16 16 C 1.46906 * 111.00008 * 170.98117 * 14 11 10 17 17 C 1.50694 * 109.47120 * 189.99817 * 16 14 11 18 18 H 1.08001 * 120.00037 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99940 * 180.02562 * 17 16 14 20 20 N 1.31509 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99834 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47018 * 120.00041 * 21 19 17 24 24 H 1.48498 * 109.47297 * 239.99903 * 21 19 17 25 25 H 1.09001 * 109.47081 * 269.72296 * 1 2 3 26 26 H 1.09008 * 109.47272 * 149.73148 * 1 2 3 27 27 H 1.09001 * 109.47585 * 29.72600 * 1 2 3 28 28 H 1.08000 * 120.00080 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.99601 * 180.21228 * 4 3 2 30 30 H 1.08000 * 119.99796 * 179.97438 * 9 5 4 31 31 H 1.08996 * 109.47580 * 179.97438 * 13 11 10 32 32 H 1.09001 * 109.47139 * 300.00570 * 13 11 10 33 33 H 1.09010 * 109.46754 * 59.99860 * 13 11 10 34 34 H 1.09008 * 109.47213 * 53.32651 * 15 14 11 35 35 H 1.08999 * 109.47196 * 173.32069 * 15 14 11 36 36 H 1.08993 * 109.47473 * 293.32744 * 15 14 11 37 37 H 1.08999 * 109.46989 * 309.99627 * 16 14 11 38 38 H 1.08997 * 109.47100 * 69.99934 * 16 14 11 39 39 H 0.97007 * 120.00037 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0039 5 6 4.2717 0.0001 -0.0009 6 7 5.7519 0.0001 -0.0014 7 8 6.3609 -1.0547 -0.0060 8 8 6.3608 1.0549 0.0029 9 6 3.5806 -1.1969 -0.0057 10 6 2.1980 -1.1969 -0.0057 11 6 1.4446 -2.5020 -0.0113 12 1 0.6274 -2.4468 -0.7306 13 6 2.3930 -3.6369 -0.4032 14 7 0.9007 -2.7592 1.3289 15 6 1.9797 -2.9595 2.3054 16 6 -0.0155 -3.9074 1.3139 17 6 -0.7375 -3.9912 2.6339 18 1 -0.5363 -3.2640 3.4066 19 6 -1.6551 -4.9963 2.8552 20 7 -1.8996 -5.8822 1.9145 21 14 -2.5496 -5.1006 4.4917 22 1 -2.0984 -3.9945 5.3739 23 1 -4.0126 -4.9863 4.2643 24 1 -2.2494 -6.4036 5.1378 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 -0.8876 -0.5180 27 1 -0.3634 0.8924 -0.5096 28 1 1.6582 2.1327 -0.0004 29 1 4.1203 2.1327 0.0073 30 1 4.1206 -2.1322 -0.0098 31 1 1.8481 -4.5809 -0.4068 32 1 2.7966 -3.4460 -1.3976 33 1 3.2102 -3.6921 0.3161 34 1 2.6702 -2.1171 2.2618 35 1 1.5551 -3.0296 3.3068 36 1 2.5146 -3.8800 2.0722 37 1 -0.7411 -3.7827 0.5101 38 1 0.5526 -4.8234 1.1517 39 1 -2.5449 -6.5896 2.0703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182834755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:49 Heat of formation + Delta-G solvation = 6.252965 kcal Electronic energy + Delta-G solvation = -21897.306772 eV Core-core repulsion = 18614.533668 eV Total energy + Delta-G solvation = -3282.773104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.26384 -41.25443 -38.61353 -37.67519 -35.05387 -34.33881 -33.19601 -30.36317 -29.42014 -29.07857 -27.13950 -26.09675 -25.34957 -23.24223 -22.55207 -21.12237 -19.88838 -19.52910 -18.62001 -18.49819 -17.12925 -16.79721 -16.62532 -16.34095 -15.65673 -15.49165 -15.13360 -14.65102 -14.56483 -14.10164 -13.63325 -13.30403 -13.23056 -13.12975 -13.00197 -12.91185 -12.76290 -12.71506 -12.49492 -12.43043 -12.31417 -12.28459 -12.16644 -12.01586 -11.64360 -11.28571 -10.60565 -10.25531 -10.12216 -9.02826 -8.19563 -6.28199 -1.20141 -0.01978 0.33424 0.39507 1.40670 1.42669 1.54436 2.26298 2.41566 3.14043 3.23394 3.42872 3.49005 3.70473 3.80397 3.88455 4.07486 4.19419 4.29454 4.42759 4.59383 4.61374 4.65937 4.75070 4.78147 4.82646 4.88631 4.93829 5.04515 5.08084 5.12726 5.26088 5.32641 5.34223 5.46042 5.61142 5.66358 6.05008 6.26675 6.50293 6.58461 6.88029 7.41449 8.91194 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.004258 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.525341 B = 6573.692180 C = 6914.285186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.003 4.003 3 C -0.109 4.109 4 C -0.049 4.049 5 C -0.072 4.072 6 N 0.035 4.965 7 O -0.206 6.206 8 O -0.163 6.163 9 C -0.054 4.054 10 C -0.074 4.074 11 C 0.116 3.884 12 H 0.094 0.906 13 C -0.186 4.186 14 N -0.524 5.524 15 C 0.040 3.960 16 C 0.211 3.789 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.283 1.283 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.185 0.815 29 H 0.172 0.828 30 H 0.146 0.854 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.010 0.990 38 H -0.031 1.031 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 14.604 -5.452 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.004 4.004 3 C -0.127 4.127 4 C -0.068 4.068 5 C -0.155 4.155 6 N 0.549 4.451 7 O -0.412 6.412 8 O -0.382 6.382 9 C -0.074 4.074 10 C -0.075 4.075 11 C 0.007 3.993 12 H 0.112 0.888 13 C -0.244 4.244 14 N -0.247 5.247 15 C -0.108 4.108 16 C 0.085 3.915 17 C -0.557 4.557 18 H 0.080 0.920 19 C -0.193 4.193 20 N -0.573 5.573 21 Si 0.788 3.212 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.209 1.209 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.202 0.798 29 H 0.189 0.811 30 H 0.164 0.836 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.028 0.972 38 H -0.013 1.013 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.705 14.797 -5.337 16.733 hybrid contribution 0.517 -1.625 0.499 1.776 sum 6.222 13.172 -4.839 15.350 Atomic orbital electron populations 1.20956 0.88605 1.04001 1.03838 1.20545 0.98305 0.91966 0.89587 1.21460 0.91795 0.99470 0.99999 1.21325 0.95215 0.96651 0.93576 1.21170 0.77517 0.98028 1.18803 1.43901 1.04630 0.99960 0.96608 1.94541 1.69985 1.21011 1.55698 1.94468 1.69926 1.20700 1.53098 1.21013 0.94363 0.97250 0.94755 1.19634 0.91238 0.95798 1.00849 1.20630 0.95767 0.90451 0.92411 0.88782 1.22514 1.00248 0.99226 1.02419 1.62279 1.16475 1.41637 1.04274 1.22167 0.93249 0.98569 0.96861 1.19382 0.90021 0.85712 0.96407 1.21480 1.22190 1.11593 1.00470 0.92014 1.25793 0.97832 0.95271 1.00364 1.70071 1.35694 1.16517 1.35058 0.85440 0.78272 0.77943 0.79595 1.18858 1.20448 1.20917 0.89982 0.91634 0.88234 0.79757 0.81082 0.83624 0.93374 0.90456 0.91992 0.91993 0.92423 0.96553 0.97223 1.01327 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.53 71.24 0.68 -1.70 16 2 C 0.00 -0.07 5.88 -19.87 -0.12 -0.18 16 3 C -0.11 -1.71 9.70 22.27 0.22 -1.50 16 4 C -0.05 -0.89 9.55 22.27 0.21 -0.68 16 5 C -0.07 -1.78 6.85 36.37 0.25 -1.53 16 6 N 0.04 1.02 4.45 -46.46 -0.21 0.81 16 7 O -0.21 -6.58 18.45 18.89 0.35 -6.23 16 8 O -0.16 -4.63 18.45 18.89 0.35 -4.28 16 9 C -0.05 -1.40 7.81 22.27 0.17 -1.23 16 10 C -0.07 -1.90 4.33 -19.87 -0.09 -1.99 16 11 C 0.12 3.59 1.85 44.17 0.08 3.67 16 12 H 0.09 2.92 6.46 -2.38 -0.02 2.91 16 13 C -0.19 -5.60 7.29 71.98 0.52 -5.07 16 14 N -0.52 -20.07 4.61 -906.04 -4.18 -24.25 16 15 C 0.04 1.47 8.41 127.69 1.07 2.54 16 16 C 0.21 10.29 4.27 85.55 0.37 10.65 16 17 C -0.52 -27.70 8.55 25.60 0.22 -27.49 16 18 H 0.06 3.26 7.10 -2.91 -0.02 3.24 16 19 C 0.01 0.30 5.46 84.66 0.46 0.76 16 20 N -0.93 -53.97 13.29 21.45 0.28 -53.68 16 21 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.55 6.23 -2.38 -0.01 1.54 16 27 H 0.10 1.31 8.08 -2.39 -0.02 1.29 16 28 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.17 2.37 7.61 -2.91 -0.02 2.35 16 30 H 0.15 3.91 5.51 -2.91 -0.02 3.90 16 31 H 0.05 1.67 6.88 -2.39 -0.02 1.65 16 32 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 33 H 0.06 1.84 5.18 -2.38 -0.01 1.83 16 34 H 0.06 2.00 6.46 -2.38 -0.02 1.98 16 35 H 0.06 2.29 6.94 -2.39 -0.02 2.28 16 36 H 0.02 0.60 6.61 -2.39 -0.02 0.59 16 37 H 0.01 0.51 7.94 -2.39 -0.02 0.49 16 38 H -0.03 -1.66 7.01 -2.39 -0.02 -1.68 16 39 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -62.81 320.21 3.74 -59.07 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.07 Total: 7.48 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.05 Total: -23.74 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -4.10 Total: -77.12 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.70 Total: -10.51 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -62.81 3.74 -59.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182834755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.323 kcal (2) G-P(sol) polarization free energy of solvation -62.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds