Wall clock time and date at job start Mon Mar 30 2020 23:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99562 * 2 1 4 4 C 1.38220 * 119.99862 * 179.72405 * 3 2 1 5 5 C 1.38255 * 119.99693 * 0.26328 * 4 3 2 6 6 N 1.48024 * 119.99838 * 180.02562 * 5 4 3 7 7 O 1.21798 * 119.99792 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99661 * 180.02562 * 6 5 4 9 9 C 1.38216 * 120.00139 * 359.97438 * 5 4 3 10 10 C 1.38208 * 120.00304 * 180.24599 * 2 1 3 11 11 C 1.50698 * 120.00211 * 359.97438 * 10 2 1 12 12 H 1.09006 * 109.47077 * 40.28396 * 11 10 2 13 13 C 1.52995 * 109.47223 * 280.28695 * 11 10 2 14 14 N 1.46897 * 109.47501 * 160.27985 * 11 10 2 15 15 C 1.46899 * 110.99915 * 303.96151 * 14 11 10 16 16 C 1.46896 * 111.00127 * 180.02562 * 14 11 10 17 17 C 1.50704 * 109.46907 * 190.00353 * 16 14 11 18 18 H 1.07995 * 120.00258 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99780 * 180.02562 * 17 16 14 20 20 N 1.31518 * 120.00226 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99869 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47461 * 59.99831 * 21 19 17 23 23 H 1.48502 * 109.47120 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47284 * 299.99506 * 21 19 17 25 25 H 1.09000 * 109.47366 * 89.99616 * 1 2 3 26 26 H 1.09000 * 109.46813 * 209.99274 * 1 2 3 27 27 H 1.09001 * 109.47363 * 329.99778 * 1 2 3 28 28 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00153 * 180.27785 * 4 3 2 30 30 H 1.08001 * 119.99666 * 180.02562 * 9 5 4 31 31 H 1.08997 * 109.47299 * 179.97438 * 13 11 10 32 32 H 1.09005 * 109.47106 * 299.99105 * 13 11 10 33 33 H 1.09002 * 109.47546 * 59.99640 * 13 11 10 34 34 H 1.08998 * 109.47560 * 59.99636 * 15 14 11 35 35 H 1.09002 * 109.47071 * 179.97438 * 15 14 11 36 36 H 1.09003 * 109.46960 * 299.98814 * 15 14 11 37 37 H 1.09000 * 109.47399 * 310.00011 * 16 14 11 38 38 H 1.09000 * 109.47221 * 70.00229 * 16 14 11 39 39 H 0.97003 * 120.00186 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0058 5 6 4.2717 0.0002 0.0060 6 7 5.7519 0.0002 0.0128 7 8 6.3608 1.0551 0.0176 8 8 6.3609 -1.0546 0.0125 9 6 3.5806 -1.1968 0.0011 10 6 2.1981 -1.1969 -0.0051 11 6 1.4447 -2.5020 -0.0102 12 1 0.5838 -2.4221 -0.6740 13 6 0.9672 -2.8207 1.4080 14 7 2.3288 -3.5760 -0.4822 15 6 2.8821 -3.2589 -1.8055 16 6 1.6264 -4.8660 -0.5009 17 6 2.6173 -5.9739 -0.7500 18 1 3.6641 -5.7428 -0.8808 19 6 2.1873 -7.2825 -0.8108 20 7 0.9126 -7.5640 -0.6511 21 14 3.4154 -8.6556 -1.1202 22 1 4.4333 -8.6624 -0.0390 23 1 2.7052 -9.9596 -1.1403 24 1 4.0839 -8.4366 -2.4280 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 0.0103 30 1 4.1207 -2.1321 0.0017 31 1 0.4219 -3.7645 1.4043 32 1 1.8281 -2.9008 2.0718 33 1 0.3111 -2.0238 1.7582 34 1 3.4559 -2.3341 -1.7474 35 1 3.5332 -4.0703 -2.1310 36 1 2.0680 -3.1372 -2.5201 37 1 1.1356 -5.0266 0.4590 38 1 0.8794 -4.8615 -1.2947 39 1 0.6101 -8.4847 -0.6935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182834775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:53 Heat of formation + Delta-G solvation = 28.182038 kcal Electronic energy + Delta-G solvation = -21945.535347 eV Core-core repulsion = 18663.713159 eV Total energy + Delta-G solvation = -3281.822188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05203 -40.19557 -37.08096 -36.39439 -33.85594 -32.87063 -31.46246 -29.87567 -28.69412 -27.22423 -25.13158 -24.58036 -23.88493 -22.32525 -21.22346 -19.87212 -18.68998 -18.37169 -17.38181 -16.50255 -16.12200 -15.78658 -14.86231 -14.75294 -14.40514 -14.12916 -14.04496 -13.60658 -13.17570 -12.66370 -12.47997 -12.32958 -12.14246 -11.81145 -11.62946 -11.47583 -11.34034 -11.23034 -11.11866 -11.00193 -10.95147 -10.88106 -10.65880 -10.33252 -9.86664 -9.35476 -9.27455 -8.96448 -8.47368 -7.46032 -6.08649 -4.09766 -0.07144 0.95265 1.42013 1.54495 3.23296 3.32258 3.36009 3.39936 4.31710 4.33207 4.42608 4.56511 4.61840 4.75281 4.97741 5.19079 5.27517 5.30853 5.33598 5.47193 5.57452 5.61238 5.64550 5.83002 5.87232 5.88284 6.07011 6.14938 6.19392 6.26020 6.36475 6.53820 6.60480 6.64240 7.15816 7.20530 7.70914 7.78307 7.94594 8.05581 8.42420 8.97099 9.54810 11.02131 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005137 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.612977 B = 5449.850872 C = 6687.361540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 C -0.126 4.126 4 C -0.062 4.062 5 C -0.059 4.059 6 N 0.032 4.968 7 O -0.177 6.177 8 O -0.155 6.155 9 C -0.024 4.024 10 C -0.069 4.069 11 C 0.117 3.883 12 H 0.050 0.950 13 C -0.143 4.143 14 N -0.535 5.535 15 C 0.026 3.974 16 C 0.191 3.809 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.057 3.943 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.172 0.828 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.013 0.987 37 H 0.040 0.960 38 H -0.008 1.008 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 17.244 1.596 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.034 4.034 3 C -0.145 4.145 4 C -0.082 4.082 5 C -0.142 4.142 6 N 0.550 4.450 7 O -0.389 6.389 8 O -0.372 6.372 9 C -0.043 4.043 10 C -0.070 4.070 11 C 0.008 3.992 12 H 0.068 0.932 13 C -0.200 4.200 14 N -0.261 5.261 15 C -0.122 4.122 16 C 0.067 3.933 17 C -0.548 4.548 18 H 0.082 0.918 19 C -0.144 4.144 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.190 0.810 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.009 0.991 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.360 17.057 1.931 17.327 hybrid contribution 0.378 -0.703 -0.813 1.139 sum -1.982 16.354 1.118 16.512 Atomic orbital electron populations 1.21075 0.89993 1.04116 1.03429 1.20235 0.97229 0.92286 0.93624 1.20959 0.92399 0.98389 1.02715 1.20930 0.94650 0.96819 0.95759 1.21145 0.79055 0.97110 1.16932 1.43649 1.03786 1.00330 0.97226 1.94485 1.69308 1.20899 1.54252 1.94587 1.69127 1.20514 1.53021 1.21275 0.94551 0.97676 0.90831 1.19959 0.92311 0.95547 0.99168 1.20525 0.93265 0.87808 0.97649 0.93211 1.21928 1.01438 1.01982 0.94701 1.62211 1.35611 1.03005 1.25225 1.22461 0.99112 1.00837 0.89826 1.19823 0.93260 0.83311 0.96904 1.21107 0.94562 0.90542 1.48602 0.91772 1.24961 0.95283 0.98814 0.95378 1.69937 1.14059 1.19524 1.50352 0.86554 0.81101 0.80820 0.78934 1.20043 1.21379 1.20255 0.90053 0.89757 0.90772 0.83986 0.83491 0.81023 0.90524 0.91710 0.92839 0.93493 0.89987 0.96820 0.94229 0.99058 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.24 36.00 0.33 -0.76 16 2 C -0.03 -0.36 5.87 -104.63 -0.61 -0.97 16 3 C -0.13 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.06 -0.70 9.56 -39.58 -0.38 -1.08 16 5 C -0.06 -0.85 6.85 -79.95 -0.55 -1.40 16 6 N 0.03 0.52 4.45 33.96 0.15 0.67 16 7 O -0.18 -2.83 18.45 -29.46 -0.54 -3.37 16 8 O -0.15 -2.76 18.45 -29.46 -0.54 -3.30 16 9 C -0.02 -0.37 6.76 -39.58 -0.27 -0.64 16 10 C -0.07 -0.95 4.47 -104.63 -0.47 -1.42 16 11 C 0.12 1.85 1.61 -68.87 -0.11 1.74 16 12 H 0.05 0.78 7.30 -51.93 -0.38 0.41 16 13 C -0.14 -2.14 8.72 37.15 0.32 -1.82 16 14 N -0.54 -10.64 3.79 -237.73 -0.90 -11.54 16 15 C 0.03 0.49 8.51 60.06 0.51 1.00 16 16 C 0.19 4.65 4.54 -4.98 -0.02 4.63 16 17 C -0.51 -13.78 8.46 -34.44 -0.29 -14.07 16 18 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.76 4.99 -51.93 -0.26 0.50 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.15 1.39 7.61 -52.49 -0.40 0.99 16 30 H 0.17 2.96 5.97 -52.49 -0.31 2.65 16 31 H 0.08 1.28 6.20 -51.93 -0.32 0.96 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.63 6.35 -51.93 -0.33 0.30 16 34 H 0.05 0.79 4.97 -51.93 -0.26 0.53 16 35 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.04 1.00 5.83 -51.93 -0.30 0.70 16 38 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -29.65 319.14 -8.28 -37.94 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.96 Total: -1.52 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -2.01 Total: -14.89 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.01 Total: -35.98 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -1.09 Total: -6.67 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.65 -8.28 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182834775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.118 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds