Wall clock time and date at job start Mon Mar 30 2020 23:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99562 * 2 1 4 4 C 1.38220 * 119.99862 * 179.72405 * 3 2 1 5 5 C 1.38255 * 119.99693 * 0.26328 * 4 3 2 6 6 N 1.48024 * 119.99838 * 180.02562 * 5 4 3 7 7 O 1.21798 * 119.99792 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99661 * 180.02562 * 6 5 4 9 9 C 1.38216 * 120.00139 * 359.97438 * 5 4 3 10 10 C 1.38208 * 120.00304 * 180.24599 * 2 1 3 11 11 C 1.50698 * 120.00211 * 359.97438 * 10 2 1 12 12 H 1.09006 * 109.47077 * 40.28396 * 11 10 2 13 13 C 1.52995 * 109.47223 * 280.28695 * 11 10 2 14 14 N 1.46897 * 109.47501 * 160.27985 * 11 10 2 15 15 C 1.46899 * 110.99915 * 303.96151 * 14 11 10 16 16 C 1.46896 * 111.00127 * 180.02562 * 14 11 10 17 17 C 1.50704 * 109.46907 * 190.00353 * 16 14 11 18 18 H 1.07995 * 120.00258 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99780 * 180.02562 * 17 16 14 20 20 N 1.31518 * 120.00226 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99869 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47461 * 59.99831 * 21 19 17 23 23 H 1.48502 * 109.47120 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47284 * 299.99506 * 21 19 17 25 25 H 1.09000 * 109.47366 * 89.99616 * 1 2 3 26 26 H 1.09000 * 109.46813 * 209.99274 * 1 2 3 27 27 H 1.09001 * 109.47363 * 329.99778 * 1 2 3 28 28 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00153 * 180.27785 * 4 3 2 30 30 H 1.08001 * 119.99666 * 180.02562 * 9 5 4 31 31 H 1.08997 * 109.47299 * 179.97438 * 13 11 10 32 32 H 1.09005 * 109.47106 * 299.99105 * 13 11 10 33 33 H 1.09002 * 109.47546 * 59.99640 * 13 11 10 34 34 H 1.08998 * 109.47560 * 59.99636 * 15 14 11 35 35 H 1.09002 * 109.47071 * 179.97438 * 15 14 11 36 36 H 1.09003 * 109.46960 * 299.98814 * 15 14 11 37 37 H 1.09000 * 109.47399 * 310.00011 * 16 14 11 38 38 H 1.09000 * 109.47221 * 70.00229 * 16 14 11 39 39 H 0.97003 * 120.00186 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0058 5 6 4.2717 0.0002 0.0060 6 7 5.7519 0.0002 0.0128 7 8 6.3608 1.0551 0.0176 8 8 6.3609 -1.0546 0.0125 9 6 3.5806 -1.1968 0.0011 10 6 2.1981 -1.1969 -0.0051 11 6 1.4447 -2.5020 -0.0102 12 1 0.5838 -2.4221 -0.6740 13 6 0.9672 -2.8207 1.4080 14 7 2.3288 -3.5760 -0.4822 15 6 2.8821 -3.2589 -1.8055 16 6 1.6264 -4.8660 -0.5009 17 6 2.6173 -5.9739 -0.7500 18 1 3.6641 -5.7428 -0.8808 19 6 2.1873 -7.2825 -0.8108 20 7 0.9126 -7.5640 -0.6511 21 14 3.4154 -8.6556 -1.1202 22 1 4.4333 -8.6624 -0.0390 23 1 2.7052 -9.9596 -1.1403 24 1 4.0839 -8.4366 -2.4280 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 0.0103 30 1 4.1207 -2.1321 0.0017 31 1 0.4219 -3.7645 1.4043 32 1 1.8281 -2.9008 2.0718 33 1 0.3111 -2.0238 1.7582 34 1 3.4559 -2.3341 -1.7474 35 1 3.5332 -4.0703 -2.1310 36 1 2.0680 -3.1372 -2.5201 37 1 1.1356 -5.0266 0.4590 38 1 0.8794 -4.8615 -1.2947 39 1 0.6101 -8.4847 -0.6935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182834775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:52 Heat of formation + Delta-G solvation = 11.498397 kcal Electronic energy + Delta-G solvation = -21946.258804 eV Core-core repulsion = 18663.713159 eV Total energy + Delta-G solvation = -3282.545645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.25324 -41.28649 -38.49196 -37.65244 -35.15609 -34.51642 -32.81780 -31.09940 -29.70896 -29.05132 -26.34291 -26.10783 -25.14122 -23.64954 -22.44560 -21.28128 -19.86831 -19.62083 -18.60374 -18.50779 -17.31798 -16.72180 -16.64424 -16.08786 -15.72434 -15.41676 -15.10964 -14.92784 -14.40569 -14.18829 -13.63539 -13.44718 -13.27866 -13.15581 -12.98474 -12.83767 -12.72818 -12.66150 -12.55615 -12.49728 -12.37695 -12.30452 -12.17394 -12.07236 -11.53294 -11.31248 -10.59275 -10.22703 -10.02256 -9.11240 -8.21865 -6.30038 -1.20869 -0.00550 0.31748 0.42398 1.40216 1.42098 1.50097 2.26914 2.39034 3.09331 3.13783 3.29657 3.54352 3.69934 3.85790 3.91709 4.18667 4.25222 4.26728 4.36605 4.54619 4.62504 4.66801 4.75435 4.78096 4.83091 4.89278 4.92949 5.03232 5.11519 5.18329 5.22235 5.24270 5.35088 5.36913 5.58521 5.64821 6.04571 6.23988 6.50618 6.57880 6.84389 7.38916 8.88557 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005137 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.612977 B = 5449.850872 C = 6687.361540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 C -0.105 4.105 4 C -0.051 4.051 5 C -0.076 4.076 6 N 0.034 4.966 7 O -0.150 6.150 8 O -0.222 6.222 9 C -0.043 4.043 10 C -0.083 4.083 11 C 0.118 3.882 12 H 0.055 0.945 13 C -0.138 4.138 14 N -0.545 5.545 15 C 0.034 3.966 16 C 0.208 3.792 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.961 3.039 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.271 1.271 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.192 0.808 29 H 0.173 0.827 30 H 0.139 0.861 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.015 0.985 37 H 0.026 0.974 38 H -0.035 1.035 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 20.390 1.679 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.018 4.018 3 C -0.124 4.124 4 C -0.070 4.070 5 C -0.159 4.159 6 N 0.547 4.453 7 O -0.373 6.373 8 O -0.424 6.424 9 C -0.062 4.062 10 C -0.084 4.084 11 C 0.009 3.991 12 H 0.073 0.927 13 C -0.195 4.195 14 N -0.270 5.270 15 C -0.114 4.114 16 C 0.082 3.918 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.190 4.190 20 N -0.570 5.570 21 Si 0.786 3.214 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.196 1.196 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.209 0.791 29 H 0.190 0.810 30 H 0.157 0.843 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.043 0.957 38 H -0.018 1.018 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.452 20.085 2.015 20.479 hybrid contribution 0.629 -1.442 -0.819 1.774 sum -2.823 18.642 1.196 18.893 Atomic orbital electron populations 1.21205 0.87711 1.05419 1.04477 1.20580 0.98762 0.91399 0.91097 1.21480 0.91486 0.99571 0.99814 1.21374 0.95575 0.96255 0.93773 1.21276 0.77473 0.98132 1.19015 1.43968 1.04809 0.99904 0.96579 1.94428 1.70069 1.20637 1.52172 1.94604 1.70079 1.21036 1.56703 1.20989 0.95154 0.97032 0.93064 1.19749 0.91577 0.95650 1.01409 1.20559 0.93006 0.87661 0.97857 0.92691 1.21887 1.01270 1.02180 0.94151 1.62057 1.36286 1.02761 1.25853 1.22350 0.98829 1.00831 0.89361 1.19444 0.92168 0.85235 0.94926 1.21436 0.94746 0.91828 1.48468 0.92502 1.25763 0.97004 1.01154 0.95098 1.70042 1.15664 1.20101 1.51205 0.85561 0.78884 0.77998 0.78933 1.19693 1.20600 1.19625 0.88945 0.90627 0.87341 0.79075 0.80987 0.84336 0.92996 0.93002 0.88954 0.91442 0.92431 0.96640 0.95651 1.01757 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.24 71.24 0.66 -0.91 16 2 C -0.02 -0.31 5.87 -19.87 -0.12 -0.43 16 3 C -0.11 -1.40 9.70 22.27 0.22 -1.19 16 4 C -0.05 -0.93 9.56 22.27 0.21 -0.72 16 5 C -0.08 -2.08 6.85 36.37 0.25 -1.83 16 6 N 0.03 1.11 4.45 -46.46 -0.21 0.90 16 7 O -0.15 -4.60 18.45 18.89 0.35 -4.25 16 8 O -0.22 -8.43 18.45 18.88 0.35 -8.08 16 9 C -0.04 -1.31 6.76 22.27 0.15 -1.16 16 10 C -0.08 -2.18 4.47 -19.87 -0.09 -2.27 16 11 C 0.12 3.75 1.61 44.17 0.07 3.82 16 12 H 0.06 1.70 7.30 -2.38 -0.02 1.69 16 13 C -0.14 -4.12 8.72 71.98 0.63 -3.49 16 14 N -0.54 -22.66 3.79 -906.06 -3.43 -26.09 16 15 C 0.03 1.35 8.51 127.69 1.09 2.44 16 16 C 0.21 10.64 4.54 85.56 0.39 11.02 16 17 C -0.53 -29.67 8.46 25.60 0.22 -29.45 16 18 H 0.06 3.21 7.12 -2.91 -0.02 3.19 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 21 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.07 4.99 -2.39 -0.01 1.06 16 27 H 0.11 0.62 8.09 -2.39 -0.02 0.60 16 28 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 29 H 0.17 2.35 7.61 -2.91 -0.02 2.33 16 30 H 0.14 5.15 5.97 -2.91 -0.02 5.13 16 31 H 0.05 1.80 6.20 -2.39 -0.01 1.78 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.09 1.99 6.35 -2.39 -0.02 1.98 16 34 H 0.07 2.36 4.97 -2.39 -0.01 2.35 16 35 H 0.06 2.49 6.76 -2.39 -0.02 2.48 16 36 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.03 1.37 5.83 -2.39 -0.01 1.35 16 38 H -0.04 -1.95 8.12 -2.39 -0.02 -1.97 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -68.45 319.14 4.57 -63.88 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.07 Total: 4.75 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 4.13 Total: -23.24 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -3.35 Total: -79.73 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.70 Total: -12.33 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.45 4.57 -63.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182834775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.382 kcal (2) G-P(sol) polarization free energy of solvation -68.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds