Wall clock time and date at job start Tue Mar 31 2020 00:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31884 * 118.95065 * 2 1 4 4 C 1.32122 * 120.97629 * 180.02562 * 3 2 1 5 5 C 1.40020 * 118.91672 * 359.97438 * 4 3 2 6 6 C 1.47707 * 120.94462 * 179.73157 * 5 4 3 7 7 O 1.21469 * 119.99867 * 174.06349 * 6 5 4 8 8 O 1.34708 * 119.99966 * 354.06112 * 6 5 4 9 9 C 1.45206 * 116.99941 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46908 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47257 * 299.99864 * 10 9 8 12 12 C 1.53004 * 109.47087 * 59.99983 * 10 9 8 13 13 C 1.50698 * 109.46795 * 179.97438 * 10 9 8 14 14 H 1.07994 * 120.00467 * 358.55499 * 13 10 9 15 15 C 1.37880 * 119.99926 * 178.54422 * 13 10 9 16 16 N 1.31507 * 120.00392 * 195.59680 * 15 13 10 17 17 Si 1.86801 * 119.99827 * 15.59968 * 15 13 10 18 18 H 1.48512 * 109.47170 * 84.21531 * 17 15 13 19 19 H 1.48504 * 109.47119 * 204.21318 * 17 15 13 20 20 H 1.48496 * 109.47332 * 324.21872 * 17 15 13 21 21 C 1.39989 * 118.10848 * 0.02562 * 5 4 3 22 22 C 1.50704 * 120.53634 * 179.97438 * 21 5 4 23 23 N 1.31860 * 118.94097 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46566 * 90.00246 * 1 2 3 25 25 H 1.09004 * 109.47203 * 209.99932 * 1 2 3 26 26 H 1.08997 * 109.46980 * 330.00449 * 1 2 3 27 27 H 1.08000 * 120.54360 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46935 * 299.99919 * 9 8 6 29 29 H 1.08994 * 109.47112 * 60.00396 * 9 8 6 30 30 H 1.09005 * 109.47487 * 67.44958 * 11 10 9 31 31 H 1.09002 * 109.47351 * 187.44502 * 11 10 9 32 32 H 1.08996 * 109.47318 * 307.45021 * 11 10 9 33 33 H 1.09003 * 109.46780 * 60.00243 * 12 10 9 34 34 H 1.09005 * 109.46806 * 179.97438 * 12 10 9 35 35 H 1.08993 * 109.46912 * 299.99467 * 12 10 9 36 36 H 0.97001 * 120.00335 * 180.02562 * 16 15 13 37 37 H 1.08992 * 109.47078 * 83.08985 * 22 21 5 38 38 H 1.09004 * 109.46371 * 203.08850 * 22 21 5 39 39 H 1.08999 * 109.46952 * 323.08523 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4658 1.2007 -0.0005 5 6 4.1858 -0.0002 -0.0005 6 6 5.6628 -0.0003 -0.0070 7 8 6.2706 -1.0463 0.1019 8 8 6.3358 1.1597 -0.1337 9 6 7.7859 1.0840 -0.1326 10 6 8.3701 2.4899 -0.2844 11 6 7.8923 3.1011 -1.6032 12 6 7.9041 3.3645 0.8814 13 6 9.8750 2.4114 -0.2826 14 1 10.3659 1.4574 -0.1597 15 6 10.6253 3.5577 -0.4381 16 7 11.9017 3.4719 -0.7429 17 14 9.8288 5.2327 -0.2158 18 1 9.8161 5.5873 1.2263 19 1 10.6018 6.2524 -0.9694 20 1 8.4353 5.1900 -0.7271 21 6 3.4658 -1.2008 -0.0005 22 6 4.1853 -2.5250 -0.0011 23 7 2.1451 -1.1539 0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 3.9814 2.1497 -0.0009 28 1 8.1263 0.6491 0.8071 29 1 8.1178 0.4607 -0.9628 30 1 6.8183 3.2802 -1.5527 31 1 8.4103 4.0446 -1.7751 32 1 8.1079 2.4138 -2.4213 33 1 8.2446 2.9291 1.8209 34 1 8.3207 4.3660 0.7734 35 1 6.8156 3.4213 0.8804 36 1 12.4297 4.2783 -0.8520 37 1 4.4677 -2.7854 1.0189 38 1 3.5278 -3.2954 -0.4040 39 1 5.0804 -2.4518 -0.6186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184810785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:07 Heat of formation + Delta-G solvation = -29.645160 kcal Electronic energy + Delta-G solvation = -21669.432722 eV Core-core repulsion = 18385.102959 eV Total energy + Delta-G solvation = -3284.329763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54380 -39.87923 -37.06268 -35.31555 -34.54528 -33.76312 -31.78589 -29.50950 -29.04912 -26.39597 -26.25140 -24.98308 -24.16039 -22.84156 -21.22590 -19.24448 -18.31834 -17.51496 -16.33243 -16.23492 -16.11226 -15.92935 -15.42857 -15.23627 -13.91984 -13.77636 -13.56496 -13.30919 -13.19620 -12.92105 -12.71102 -12.64325 -12.53421 -12.48822 -12.15516 -11.99364 -11.75613 -11.70701 -10.79732 -10.55454 -10.40014 -10.35084 -10.08478 -10.02573 -9.86224 -9.66646 -9.54767 -9.18171 -8.70164 -8.48445 -6.21013 -4.18881 0.14683 0.78869 2.52583 2.82754 3.23689 3.32303 3.37459 3.47209 3.57019 3.74988 4.15989 4.32820 4.55606 4.76675 5.00657 5.11311 5.17087 5.19305 5.38111 5.48495 5.51600 5.65394 5.69834 5.82697 5.91639 6.05320 6.12457 6.21746 6.47538 6.53253 6.61439 6.64761 6.73100 6.79167 6.93185 7.17652 7.38645 7.64455 7.74709 7.93461 8.36326 8.81872 9.42860 10.91625 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.004166 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.724024 B = 6719.525474 C = 7402.295673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.342 3.658 3 N -0.532 5.532 4 C 0.215 3.785 5 C -0.239 4.239 6 C 0.513 3.487 7 O -0.501 6.501 8 O -0.348 6.348 9 C 0.095 3.905 10 C 0.044 3.956 11 C -0.143 4.143 12 C -0.145 4.145 13 C -0.522 4.522 14 H 0.076 0.924 15 C 0.080 3.920 16 N -0.888 5.888 17 Si 0.878 3.122 18 H -0.284 1.284 19 H -0.303 1.303 20 H -0.242 1.242 21 C 0.242 3.758 22 C -0.114 4.114 23 N -0.528 5.528 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.186 0.814 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.266 0.734 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.111 -6.138 1.250 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 N -0.247 5.247 4 C 0.048 3.952 5 C -0.245 4.245 6 C 0.356 3.644 7 O -0.391 6.391 8 O -0.264 6.264 9 C 0.023 3.977 10 C 0.043 3.957 11 C -0.201 4.201 12 C -0.202 4.202 13 C -0.559 4.559 14 H 0.094 0.906 15 C -0.123 4.123 16 N -0.524 5.524 17 Si 0.710 3.290 18 H -0.211 1.211 19 H -0.231 1.231 20 H -0.168 1.168 21 C 0.096 3.904 22 C -0.171 4.171 23 N -0.244 5.244 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.203 0.797 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.705 -6.339 1.236 21.689 hybrid contribution 0.927 0.978 0.215 1.364 sum -19.778 -5.361 1.451 20.543 Atomic orbital electron populations 1.20654 0.85246 1.04509 1.04239 1.23597 0.98554 0.83471 0.86738 1.68397 1.09772 1.29871 1.16624 1.23792 0.89052 0.98472 0.83856 1.20890 0.93158 0.96775 1.13642 1.20458 0.87381 0.82855 0.73717 1.90784 1.70021 1.32574 1.45735 1.86510 1.25189 1.32626 1.82092 1.23503 0.71426 1.00887 1.01914 1.18591 0.95894 0.88758 0.92488 1.22291 0.98266 1.01118 0.98383 1.22264 0.98633 0.99565 0.99743 1.20632 0.87091 0.96040 1.52148 0.90593 1.24895 0.94670 0.99135 0.93598 1.69951 1.07564 1.29405 1.45454 0.87429 0.79940 0.83723 0.77905 1.21124 1.23133 1.16812 1.22016 0.88880 0.95490 0.84055 1.21134 1.00541 0.90459 1.04946 1.68301 1.08773 1.30094 1.17222 0.89123 0.89321 0.89208 0.79678 0.91490 0.91352 0.94937 0.92452 0.93688 0.93167 0.94116 0.94236 0.92400 0.88862 0.90341 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.31 36.01 0.37 -0.27 16 2 C 0.34 3.94 7.64 -157.06 -1.20 2.74 16 3 N -0.53 -6.65 10.31 -10.38 -0.11 -6.75 16 4 C 0.21 2.72 10.90 -16.76 -0.18 2.54 16 5 C -0.24 -3.29 5.91 -104.71 -0.62 -3.91 16 6 C 0.51 8.21 7.85 34.60 0.27 8.48 16 7 O -0.50 -8.71 13.33 -19.24 -0.26 -8.96 16 8 O -0.35 -6.02 8.40 -40.51 -0.34 -6.36 16 9 C 0.10 1.88 4.27 37.16 0.16 2.04 16 10 C 0.04 0.96 0.58 -155.66 -0.09 0.87 16 11 C -0.14 -3.01 7.59 37.15 0.28 -2.73 16 12 C -0.15 -3.01 7.65 37.16 0.28 -2.73 16 13 C -0.52 -13.92 8.62 -34.44 -0.30 -14.21 16 14 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.08 2.22 5.31 -17.82 -0.09 2.12 16 16 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 17 Si 0.88 20.89 22.82 -169.99 -3.88 17.01 16 18 H -0.28 -6.72 7.10 56.52 0.40 -6.31 16 19 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.24 -5.29 4.59 56.52 0.26 -5.03 16 21 C 0.24 3.13 6.87 -81.80 -0.56 2.57 16 22 C -0.11 -1.28 8.97 36.01 0.32 -0.96 16 23 N -0.53 -6.59 10.25 -6.66 -0.07 -6.65 16 24 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.19 2.08 7.73 -52.49 -0.41 1.68 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.06 1.26 3.98 -51.93 -0.21 1.06 16 32 H 0.04 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.88 2.50 -51.93 -0.13 0.75 16 35 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.33 5.99 -51.93 -0.31 1.02 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -30.23 315.67 -5.84 -36.07 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.36 Total: -0.18 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.35 Total: -3.44 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.60 Total: -38.90 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.60 Total: -15.32 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -3.88 Total: 17.01 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.23 -5.84 -36.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184810785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.426 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds