Wall clock time and date at job start Tue Mar 31 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40196 * 120.36411 * 2 1 4 4 C 1.35352 * 119.94341 * 179.76598 * 3 2 1 5 5 N 1.35762 * 120.70410 * 0.51646 * 4 3 2 6 6 C 1.46501 * 119.62479 * 179.75626 * 5 4 3 7 7 C 1.50703 * 109.47230 * 269.72588 * 6 5 4 8 8 O 1.21280 * 119.99719 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00126 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99939 * 179.97438 * 9 7 6 12 12 H 1.09001 * 109.47464 * 0.02562 * 11 9 7 13 13 C 1.53006 * 109.46995 * 120.00347 * 11 9 7 14 14 C 1.50699 * 109.47248 * 240.00033 * 11 9 7 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99908 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00364 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99946 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47324 * 59.99539 * 18 16 14 20 20 H 1.48494 * 109.47376 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46921 * 299.99915 * 18 16 14 22 22 C 1.34662 * 120.74733 * 359.48422 * 5 4 3 23 23 O 1.22065 * 119.98398 * 180.28028 * 22 5 4 24 24 C 1.36396 * 120.36668 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46714 * 269.97488 * 1 2 3 26 26 H 1.08996 * 109.47298 * 29.97666 * 1 2 3 27 27 H 1.08996 * 109.47018 * 149.97910 * 1 2 3 28 28 H 1.07999 * 120.02775 * 0.05023 * 3 2 1 29 29 H 1.08000 * 119.64883 * 180.27514 * 4 3 2 30 30 H 1.09005 * 109.46826 * 149.72982 * 6 5 4 31 31 H 1.08992 * 109.47285 * 29.72537 * 6 5 4 32 32 H 1.08998 * 109.46877 * 269.99882 * 10 9 7 33 33 H 1.09004 * 109.46845 * 29.99902 * 10 9 7 34 34 H 1.08994 * 109.47249 * 150.00133 * 10 9 7 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 11 9 36 36 H 1.08993 * 109.46955 * 60.00138 * 13 11 9 37 37 H 1.09000 * 109.47050 * 179.97438 * 13 11 9 38 38 H 0.96999 * 120.00396 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.34901 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2539 0.0274 -0.0009 6 6 5.7188 0.0443 -0.0009 7 6 6.2211 0.0501 -1.4218 8 8 5.4330 0.0406 -2.3436 9 7 7.5460 0.0648 -1.6681 10 6 8.4980 0.0746 -0.5546 11 6 8.0343 0.0699 -3.0493 12 1 7.1865 0.0607 -3.7344 13 6 8.8703 1.3285 -3.2900 14 6 8.8852 -1.1512 -3.2858 15 1 9.0458 -1.8603 -2.4873 16 6 9.4586 -1.3630 -4.5217 17 7 9.2626 -0.4997 -5.4942 18 14 10.5128 -2.8770 -4.8151 19 1 9.7008 -4.0983 -4.5822 20 1 11.0078 -2.8718 -6.2151 21 1 11.6673 -2.8647 -3.8812 22 6 3.6017 -1.1508 -0.0010 23 8 4.2312 -2.1965 -0.0010 24 6 2.1966 -1.1768 -0.0005 25 1 -0.3633 -0.0005 1.0278 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6822 2.1486 0.0008 29 1 4.1103 2.1344 0.0093 30 1 6.0923 -0.8416 0.5128 31 1 6.0718 0.9383 0.5128 32 1 8.7228 1.1047 -0.2779 33 1 8.0633 -0.4445 0.2996 34 1 9.4161 -0.4289 -0.8571 35 1 8.2549 2.2118 -3.1190 36 1 9.7180 1.3381 -2.6049 37 1 9.2340 1.3321 -4.3175 38 1 9.6657 -0.6489 -6.3638 39 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194591823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:23 Heat of formation + Delta-G solvation = -32.355967 kcal Electronic energy + Delta-G solvation = -21855.167134 eV Core-core repulsion = 18570.719821 eV Total energy + Delta-G solvation = -3284.447313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32408 -38.94128 -36.87352 -35.62836 -34.94325 -32.92425 -30.64571 -29.70016 -29.00330 -26.72383 -26.06977 -25.22353 -23.63101 -21.95903 -20.98192 -18.68117 -17.45810 -17.32138 -16.88060 -16.22150 -15.94127 -15.42846 -14.86869 -14.75752 -14.30848 -14.14753 -13.86676 -13.46709 -13.02739 -12.83552 -12.62829 -12.51483 -12.27146 -11.93311 -11.70396 -11.67235 -11.59447 -11.51353 -11.05707 -10.84693 -10.74496 -10.29604 -10.17771 -9.96852 -9.76905 -9.23010 -9.00586 -8.43625 -7.85028 -7.68586 -6.08211 -4.16228 0.90050 1.97765 2.65555 3.18039 3.29270 3.34076 3.37637 3.67266 3.97580 4.39962 4.52309 4.63046 4.79815 4.96968 5.00824 5.17546 5.22761 5.23508 5.39296 5.41240 5.52871 5.67222 5.70905 5.92546 5.97732 6.11837 6.31038 6.38676 6.57848 6.70110 6.76713 7.00627 7.19725 7.33122 7.47345 7.68759 7.97736 8.16147 8.21922 8.42871 8.77392 8.94065 9.50081 10.97196 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.004265 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.887630 B = 6563.391850 C = 6788.673901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.012 3.988 3 C -0.238 4.238 4 C 0.151 3.849 5 N -0.478 5.478 6 C 0.069 3.931 7 C 0.492 3.508 8 O -0.540 6.540 9 N -0.587 5.587 10 C 0.079 3.921 11 C 0.259 3.741 12 H 0.063 0.937 13 C -0.145 4.145 14 C -0.528 4.528 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.888 5.888 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.521 3.479 23 O -0.549 6.549 24 C -0.249 4.249 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.010 0.990 36 H 0.030 0.970 37 H 0.094 0.906 38 H 0.264 0.736 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.983 6.970 14.223 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.009 3.991 3 C -0.261 4.261 4 C 0.023 3.977 5 N -0.188 5.188 6 C -0.056 4.056 7 C 0.276 3.724 8 O -0.418 6.418 9 N -0.319 5.319 10 C -0.065 4.065 11 C 0.159 3.841 12 H 0.080 0.920 13 C -0.203 4.203 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.323 3.677 23 O -0.431 6.431 24 C -0.270 4.270 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.160 0.840 29 H 0.177 0.823 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.868 6.302 13.508 18.447 hybrid contribution 0.755 -0.704 -0.232 1.058 sum -10.113 5.598 13.276 17.603 Atomic orbital electron populations 1.20899 0.90583 1.03453 1.02771 1.20152 0.96560 0.92729 0.89709 1.20442 0.92323 0.98744 1.14575 1.21880 0.93566 0.89628 0.92600 1.45098 1.07668 1.07158 1.58860 1.21958 0.78981 1.06408 0.98293 1.20375 0.83596 0.78312 0.90072 1.90698 1.54938 1.50589 1.45533 1.48225 1.03907 1.70045 1.09715 1.21682 0.95453 1.00528 0.88864 1.18971 0.94950 0.94195 0.76001 0.91961 1.22080 0.98393 0.95591 1.04276 1.21277 1.30855 1.06941 0.97578 0.92199 1.24884 0.96389 0.96704 0.95718 1.69861 1.44328 1.35478 1.02959 0.86533 0.80391 0.83158 0.77213 1.20154 1.21132 1.20174 1.17074 0.89303 0.82552 0.78787 1.90967 1.69153 1.30273 1.52735 1.21890 0.92345 0.99424 1.13370 0.90357 0.90884 0.90939 0.83952 0.82344 0.85749 0.86800 0.93523 0.92784 0.89629 0.97078 0.95066 0.88745 0.92596 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.03 36.01 0.36 -0.57 16 2 C 0.01 0.14 5.89 -104.55 -0.62 -0.48 16 3 C -0.24 -2.48 9.71 -39.88 -0.39 -2.87 16 4 C 0.15 1.77 10.28 -16.84 -0.17 1.60 16 5 N -0.48 -7.42 2.07 -121.06 -0.25 -7.67 16 6 C 0.07 1.04 4.37 -5.19 -0.02 1.02 16 7 C 0.49 10.27 7.74 -10.99 -0.09 10.19 16 8 O -0.54 -13.73 15.76 5.56 0.09 -13.64 16 9 N -0.59 -12.45 2.75 -175.26 -0.48 -12.93 16 10 C 0.08 1.26 9.24 59.85 0.55 1.81 16 11 C 0.26 6.66 2.64 -69.08 -0.18 6.47 16 12 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 13 C -0.14 -3.42 8.97 37.16 0.33 -3.08 16 14 C -0.53 -14.53 7.99 -34.44 -0.28 -14.80 16 15 H 0.06 1.63 7.33 -52.49 -0.38 1.24 16 16 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 17 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 C 0.52 9.44 7.40 -15.45 -0.11 9.33 16 23 O -0.55 -12.17 16.64 4.86 0.08 -12.09 16 24 C -0.25 -3.64 9.65 -39.38 -0.38 -4.02 16 25 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.16 1.31 8.03 -52.49 -0.42 0.88 16 30 H 0.12 1.89 6.64 -51.93 -0.35 1.55 16 31 H 0.11 1.16 7.97 -51.93 -0.41 0.75 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 34 H 0.09 1.49 7.02 -51.93 -0.36 1.13 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -36.40 327.73 -6.53 -42.92 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.43 Total: 0.46 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.08 Total: 6.32 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.11 Total: -45.35 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: 0.17 Total: -25.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.40 -6.53 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194591823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.568 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds