Wall clock time and date at job start Tue Mar 31 2020 00:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40196 * 120.36411 * 2 1 4 4 C 1.35352 * 119.94341 * 179.76598 * 3 2 1 5 5 N 1.35762 * 120.70410 * 0.51646 * 4 3 2 6 6 C 1.46501 * 119.62479 * 179.75626 * 5 4 3 7 7 C 1.50703 * 109.47230 * 269.72588 * 6 5 4 8 8 O 1.21280 * 119.99719 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00126 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99939 * 179.97438 * 9 7 6 12 12 H 1.09001 * 109.47464 * 0.02562 * 11 9 7 13 13 C 1.53006 * 109.46995 * 120.00347 * 11 9 7 14 14 C 1.50699 * 109.47248 * 240.00033 * 11 9 7 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 11 9 16 16 C 1.37879 * 119.99908 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00364 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99946 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47324 * 59.99539 * 18 16 14 20 20 H 1.48494 * 109.47376 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46921 * 299.99915 * 18 16 14 22 22 C 1.34662 * 120.74733 * 359.48422 * 5 4 3 23 23 O 1.22065 * 119.98398 * 180.28028 * 22 5 4 24 24 C 1.36396 * 120.36668 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46714 * 269.97488 * 1 2 3 26 26 H 1.08996 * 109.47298 * 29.97666 * 1 2 3 27 27 H 1.08996 * 109.47018 * 149.97910 * 1 2 3 28 28 H 1.07999 * 120.02775 * 0.05023 * 3 2 1 29 29 H 1.08000 * 119.64883 * 180.27514 * 4 3 2 30 30 H 1.09005 * 109.46826 * 149.72982 * 6 5 4 31 31 H 1.08992 * 109.47285 * 29.72537 * 6 5 4 32 32 H 1.08998 * 109.46877 * 269.99882 * 10 9 7 33 33 H 1.09004 * 109.46845 * 29.99902 * 10 9 7 34 34 H 1.08994 * 109.47249 * 150.00133 * 10 9 7 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 11 9 36 36 H 1.08993 * 109.46955 * 60.00138 * 13 11 9 37 37 H 1.09000 * 109.47050 * 179.97438 * 13 11 9 38 38 H 0.96999 * 120.00396 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.34901 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2539 0.0274 -0.0009 6 6 5.7188 0.0443 -0.0009 7 6 6.2211 0.0501 -1.4218 8 8 5.4330 0.0406 -2.3436 9 7 7.5460 0.0648 -1.6681 10 6 8.4980 0.0746 -0.5546 11 6 8.0343 0.0699 -3.0493 12 1 7.1865 0.0607 -3.7344 13 6 8.8703 1.3285 -3.2900 14 6 8.8852 -1.1512 -3.2858 15 1 9.0458 -1.8603 -2.4873 16 6 9.4586 -1.3630 -4.5217 17 7 9.2626 -0.4997 -5.4942 18 14 10.5128 -2.8770 -4.8151 19 1 9.7008 -4.0983 -4.5822 20 1 11.0078 -2.8718 -6.2151 21 1 11.6673 -2.8647 -3.8812 22 6 3.6017 -1.1508 -0.0010 23 8 4.2312 -2.1965 -0.0010 24 6 2.1966 -1.1768 -0.0005 25 1 -0.3633 -0.0005 1.0278 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6822 2.1486 0.0008 29 1 4.1103 2.1344 0.0093 30 1 6.0923 -0.8416 0.5128 31 1 6.0718 0.9383 0.5128 32 1 8.7228 1.1047 -0.2779 33 1 8.0633 -0.4445 0.2996 34 1 9.4161 -0.4289 -0.8571 35 1 8.2549 2.2118 -3.1190 36 1 9.7180 1.3381 -2.6049 37 1 9.2340 1.3321 -4.3175 38 1 9.6657 -0.6489 -6.3638 39 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194591823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:22 Heat of formation + Delta-G solvation = -57.336640 kcal Electronic energy + Delta-G solvation = -21856.250377 eV Core-core repulsion = 18570.719821 eV Total energy + Delta-G solvation = -3285.530556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49796 -40.54334 -38.09666 -37.28933 -36.17239 -34.87253 -32.06131 -31.01066 -30.22024 -27.88944 -27.48556 -27.29938 -24.63986 -23.43462 -22.34973 -20.31034 -18.65143 -18.59217 -18.51936 -17.96254 -17.16048 -16.99841 -16.41887 -16.33762 -15.82230 -15.16690 -15.03376 -14.74724 -14.36097 -14.13254 -14.07724 -13.57458 -13.55760 -13.33327 -13.12833 -13.04569 -12.89167 -12.82695 -12.75985 -12.65108 -12.45024 -12.22245 -12.15779 -11.25918 -11.11733 -11.06162 -10.59543 -10.43232 -9.41197 -8.97115 -8.19137 -6.35578 -0.09849 0.93142 1.36886 1.40504 1.46712 1.53075 1.62219 2.26878 2.41968 2.72750 3.08785 3.55682 3.65939 3.74787 3.88496 4.05143 4.15586 4.33039 4.38247 4.46154 4.72854 4.74554 4.79990 4.85468 4.88637 4.90747 5.01912 5.04292 5.12183 5.25428 5.43924 5.48966 5.54227 5.62181 5.69270 6.00222 6.08851 6.12818 6.70029 6.71510 6.99168 7.21750 7.38747 8.84853 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.004265 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.887630 B = 6563.391850 C = 6788.673901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.034 3.966 3 C -0.230 4.230 4 C 0.137 3.863 5 N -0.483 5.483 6 C 0.081 3.919 7 C 0.481 3.519 8 O -0.598 6.598 9 N -0.594 5.594 10 C 0.072 3.928 11 C 0.262 3.738 12 H 0.004 0.996 13 C -0.128 4.128 14 C -0.545 4.545 15 H 0.057 0.943 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.962 3.038 19 H -0.284 1.284 20 H -0.280 1.280 21 H -0.259 1.259 22 C 0.498 3.502 23 O -0.616 6.616 24 C -0.293 4.293 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.187 0.813 29 H 0.201 0.799 30 H 0.123 0.877 31 H 0.176 0.824 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.265 0.735 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 9.144 16.385 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 C -0.252 4.252 4 C 0.011 3.989 5 N -0.192 5.192 6 C -0.044 4.044 7 C 0.269 3.731 8 O -0.480 6.480 9 N -0.325 5.325 10 C -0.069 4.069 11 C 0.160 3.840 12 H 0.022 0.978 13 C -0.186 4.186 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.787 3.213 19 H -0.210 1.210 20 H -0.205 1.205 21 H -0.183 1.183 22 C 0.304 3.696 23 O -0.505 6.505 24 C -0.315 4.315 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.204 0.796 29 H 0.218 0.782 30 H 0.140 0.860 31 H 0.193 0.807 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.275 8.532 15.723 21.146 hybrid contribution 0.756 -1.266 -0.903 1.729 sum -10.520 7.267 14.820 19.573 Atomic orbital electron populations 1.21033 0.87568 1.04538 1.04509 1.20671 0.98715 0.91910 0.85745 1.21078 0.92150 0.99953 1.12006 1.22733 0.94637 0.89613 0.91876 1.45141 1.07922 1.07709 1.58408 1.22013 0.79092 1.09143 0.94119 1.21385 0.82923 0.76749 0.92089 1.90660 1.56306 1.53063 1.48000 1.48218 1.05220 1.69763 1.09261 1.21992 0.93794 1.03228 0.87934 1.18541 0.92703 0.94757 0.77973 0.97834 1.21826 0.98761 0.95095 1.02967 1.21567 1.31157 1.07752 0.97831 0.92521 1.25700 0.97620 0.99456 0.95499 1.69999 1.45079 1.37017 1.03258 0.85556 0.79063 0.79063 0.77629 1.20978 1.20484 1.18295 1.17641 0.90552 0.82651 0.78770 1.90901 1.70413 1.32448 1.56698 1.21878 0.91210 1.01013 1.17386 0.88006 0.88627 0.91050 0.79568 0.78243 0.85961 0.80717 0.89784 0.89451 0.91301 0.95522 0.93102 0.91567 0.92538 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.03 71.24 0.71 -0.75 16 2 C 0.03 0.70 5.89 -19.82 -0.12 0.58 16 3 C -0.23 -3.92 9.71 22.08 0.21 -3.71 16 4 C 0.14 2.79 10.28 83.42 0.86 3.64 16 5 N -0.48 -14.52 2.07 -655.05 -1.36 -15.88 16 6 C 0.08 2.32 4.37 85.63 0.37 2.69 16 7 C 0.48 20.19 7.74 87.66 0.68 20.87 16 8 O -0.60 -31.70 15.76 -3.03 -0.05 -31.75 16 9 N -0.59 -25.07 2.75 -826.80 -2.28 -27.35 16 10 C 0.07 2.15 9.24 127.77 1.18 3.33 16 11 C 0.26 13.89 2.64 44.25 0.12 14.00 16 12 H 0.00 0.24 6.90 -2.39 -0.02 0.22 16 13 C -0.13 -6.05 8.97 71.98 0.65 -5.41 16 14 C -0.54 -30.70 7.99 25.60 0.20 -30.49 16 15 H 0.06 3.14 7.33 -2.91 -0.02 3.12 16 16 C 0.02 0.97 5.30 84.66 0.45 1.42 16 17 N -0.91 -53.72 11.32 21.45 0.24 -53.47 16 18 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 C 0.50 18.73 7.40 84.82 0.63 19.36 16 23 O -0.62 -29.22 16.64 -5.53 -0.09 -29.31 16 24 C -0.29 -8.82 9.65 22.40 0.22 -8.60 16 25 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.09 0.79 8.10 -2.39 -0.02 0.78 16 27 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 28 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 29 H 0.20 2.27 8.03 -2.91 -0.02 2.24 16 30 H 0.12 3.61 6.64 -2.38 -0.02 3.60 16 31 H 0.18 2.74 7.97 -2.39 -0.02 2.72 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.00 6.44 -2.38 -0.02 1.99 16 34 H 0.07 2.30 7.02 -2.39 -0.02 2.28 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 37 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 38 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -88.12 327.73 5.70 -82.42 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.05 Total: 11.81 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.16 Total: 16.93 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -3.39 Total: -96.70 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -0.14 Total: -61.06 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -88.12 5.70 -82.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194591823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.082 kcal (2) G-P(sol) polarization free energy of solvation -88.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds