Wall clock time and date at job start Tue Mar 31 2020 00:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40196 * 120.37068 * 2 1 4 4 C 1.35352 * 119.94918 * 179.76914 * 3 2 1 5 5 N 1.35765 * 120.70043 * 0.50651 * 4 3 2 6 6 C 1.46499 * 119.62363 * 179.76547 * 5 4 3 7 7 C 1.50699 * 109.47051 * 269.72476 * 6 5 4 8 8 O 1.21283 * 119.99843 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00475 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99370 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00710 * 180.02562 * 9 7 6 12 12 H 1.09002 * 109.46725 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47188 * 240.00300 * 11 9 7 14 14 C 1.50697 * 109.47081 * 119.99864 * 11 9 7 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46980 * 89.99582 * 18 16 14 20 20 H 1.48493 * 109.47135 * 209.99651 * 18 16 14 21 21 H 1.48498 * 109.47274 * 330.00048 * 18 16 14 22 22 C 1.34665 * 120.74874 * 359.48460 * 5 4 3 23 23 O 1.22060 * 119.97851 * 180.27519 * 22 5 4 24 24 C 1.36405 * 120.36580 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47347 * 269.98129 * 1 2 3 26 26 H 1.09004 * 109.46651 * 29.98133 * 1 2 3 27 27 H 1.09000 * 109.46711 * 149.97995 * 1 2 3 28 28 H 1.07996 * 120.02175 * 0.03320 * 3 2 1 29 29 H 1.07997 * 119.64530 * 180.27092 * 4 3 2 30 30 H 1.08994 * 109.47287 * 149.72681 * 6 5 4 31 31 H 1.09006 * 109.47194 * 29.72029 * 6 5 4 32 32 H 1.09003 * 109.46975 * 269.99637 * 10 9 7 33 33 H 1.08995 * 109.47277 * 29.99688 * 10 9 7 34 34 H 1.09003 * 109.46743 * 150.00175 * 10 9 7 35 35 H 1.09002 * 109.47153 * 299.99573 * 13 11 9 36 36 H 1.09001 * 109.46832 * 179.97438 * 13 11 9 37 37 H 1.09004 * 109.47261 * 59.99745 * 13 11 9 38 38 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.34877 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0047 5 7 4.2539 0.0272 -0.0008 6 6 5.7188 0.0440 -0.0007 7 6 6.2211 0.0497 -1.4215 8 8 5.4331 0.0410 -2.3434 9 7 7.5461 0.0654 -1.6678 10 6 8.4980 0.0763 -0.5542 11 6 8.0345 0.0714 -3.0490 12 1 7.1868 0.0620 -3.7341 13 6 8.8991 -1.1676 -3.2896 14 6 8.8571 1.3117 -3.2854 15 1 9.0020 2.0240 -2.4866 16 6 9.4248 1.5371 -4.5215 17 7 9.2488 0.6696 -5.4941 18 14 10.4451 3.0742 -4.8145 19 1 11.8666 2.7943 -4.4887 20 1 10.3340 3.4780 -6.2392 21 1 9.9459 4.1723 -3.9484 22 6 3.6016 -1.1509 -0.0007 23 8 4.2312 -2.1966 -0.0007 24 6 2.1966 -1.1769 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6823 2.1485 0.0005 29 1 4.1104 2.1343 0.0091 30 1 6.0923 -0.8417 0.5131 31 1 6.0719 0.9382 0.5130 32 1 8.7220 1.1067 -0.2778 33 1 8.0637 -0.4428 0.3002 34 1 9.4166 -0.4266 -0.8565 35 1 9.7469 -1.1578 -2.6045 36 1 9.2621 -1.1633 -4.3174 37 1 8.3041 -2.0648 -3.1186 38 1 9.6478 0.8283 -6.3638 39 1 1.6683 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194591839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:26 Heat of formation + Delta-G solvation = -32.296798 kcal Electronic energy + Delta-G solvation = -21841.401039 eV Core-core repulsion = 18556.956292 eV Total energy + Delta-G solvation = -3284.444747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33237 -38.94296 -36.88776 -35.63501 -34.94646 -32.94308 -30.64851 -29.70256 -29.00180 -26.71639 -26.11142 -25.22630 -23.63185 -21.96362 -20.97621 -18.67754 -17.46228 -17.32508 -16.87267 -16.26620 -15.93406 -15.44048 -14.85688 -14.78330 -14.32782 -14.15193 -13.88955 -13.47698 -12.98779 -12.87711 -12.64016 -12.62259 -12.26621 -11.96627 -11.70375 -11.61934 -11.56763 -11.52199 -11.10921 -10.83272 -10.73035 -10.30500 -10.20582 -9.97475 -9.79071 -9.20930 -9.01249 -8.46895 -7.85833 -7.68204 -6.10367 -4.19281 0.89794 1.97174 2.65156 3.19072 3.23584 3.30832 3.32912 3.65742 3.96755 4.36061 4.54408 4.63140 4.80528 4.96526 5.00935 5.17940 5.20923 5.22847 5.38979 5.39537 5.52758 5.64800 5.70333 5.96684 5.98802 6.11637 6.21925 6.38483 6.57528 6.74709 6.81529 7.02844 7.19015 7.35518 7.46172 7.66981 7.97229 8.14287 8.19566 8.42793 8.75791 8.92687 9.47170 10.94941 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.004234 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.307163 B = 6611.481699 C = 6931.337263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.014 3.986 3 C -0.238 4.238 4 C 0.153 3.847 5 N -0.478 5.478 6 C 0.069 3.931 7 C 0.492 3.508 8 O -0.540 6.540 9 N -0.588 5.588 10 C 0.082 3.918 11 C 0.259 3.741 12 H 0.063 0.937 13 C -0.148 4.148 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.886 5.886 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.521 3.479 23 O -0.553 6.553 24 C -0.251 4.251 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.160 0.840 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.094 0.906 37 H 0.013 0.987 38 H 0.264 0.736 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 2.363 14.230 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.010 3.990 3 C -0.261 4.261 4 C 0.025 3.975 5 N -0.187 5.187 6 C -0.056 4.056 7 C 0.277 3.723 8 O -0.418 6.418 9 N -0.319 5.319 10 C -0.062 4.062 11 C 0.159 3.841 12 H 0.081 0.919 13 C -0.206 4.206 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.524 5.524 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.324 3.676 23 O -0.436 6.436 24 C -0.272 4.272 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.142 0.858 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.869 1.630 13.517 17.422 hybrid contribution 0.774 0.964 -0.249 1.260 sum -10.096 2.594 13.269 16.873 Atomic orbital electron populations 1.20902 0.90575 1.03466 1.02784 1.20162 0.96570 0.92734 0.89533 1.20454 0.92328 0.98774 1.14523 1.21914 0.93582 0.89679 0.92342 1.45092 1.07693 1.07162 1.58764 1.21962 0.78960 1.06423 0.98304 1.20362 0.83580 0.78325 0.90069 1.90700 1.54926 1.50635 1.45519 1.48224 1.03923 1.70061 1.09719 1.21640 0.94721 1.01211 0.88630 1.18980 0.94912 0.94244 0.75985 0.91921 1.22101 0.98522 0.95838 1.04181 1.21287 1.32090 1.05781 0.97414 0.92252 1.24905 0.96302 0.96807 0.95783 1.69881 1.44359 1.35227 1.02971 0.86475 0.80284 0.82958 0.77534 1.20583 1.21086 1.19962 1.17059 0.89298 0.82516 0.78734 1.90943 1.69207 1.30324 1.53133 1.21875 0.92337 0.99398 1.13626 0.90340 0.90855 0.90942 0.83913 0.82230 0.85838 0.86681 0.92927 0.92923 0.90402 0.95007 0.88719 0.96825 0.92613 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.03 36.01 0.36 -0.57 16 2 C 0.01 0.16 5.89 -104.55 -0.62 -0.46 16 3 C -0.24 -2.53 9.71 -39.88 -0.39 -2.92 16 4 C 0.15 1.84 10.28 -16.84 -0.17 1.67 16 5 N -0.48 -7.40 2.07 -121.07 -0.25 -7.65 16 6 C 0.07 1.04 4.37 -5.19 -0.02 1.02 16 7 C 0.49 10.27 7.74 -10.99 -0.09 10.19 16 8 O -0.54 -13.72 15.76 5.56 0.09 -13.64 16 9 N -0.59 -12.45 2.75 -175.26 -0.48 -12.94 16 10 C 0.08 1.31 9.48 59.85 0.57 1.88 16 11 C 0.26 6.66 2.63 -69.09 -0.18 6.47 16 12 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 13 C -0.15 -3.62 8.95 37.16 0.33 -3.29 16 14 C -0.53 -14.07 8.37 -34.44 -0.29 -14.36 16 15 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 18 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.52 9.27 7.40 -15.45 -0.11 9.15 16 23 O -0.55 -11.85 16.64 4.86 0.08 -11.77 16 24 C -0.25 -3.61 9.65 -39.38 -0.38 -3.99 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.16 1.43 8.03 -52.49 -0.42 1.01 16 30 H 0.12 1.81 6.65 -51.93 -0.35 1.47 16 31 H 0.12 1.23 7.97 -51.93 -0.41 0.82 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.65 6.44 -51.93 -0.33 0.32 16 34 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 35 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 36 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -35.74 327.05 -6.47 -42.21 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.36 Total: 1.17 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.08 Total: 6.45 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.11 Total: -45.09 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.17 Total: -25.41 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.74 -6.47 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194591839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.909 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds