Wall clock time and date at job start Tue Mar 31 2020 00:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40196 * 120.37068 * 2 1 4 4 C 1.35352 * 119.94918 * 179.76914 * 3 2 1 5 5 N 1.35765 * 120.70043 * 0.50651 * 4 3 2 6 6 C 1.46499 * 119.62363 * 179.76547 * 5 4 3 7 7 C 1.50699 * 109.47051 * 269.72476 * 6 5 4 8 8 O 1.21283 * 119.99843 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00475 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99370 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00710 * 180.02562 * 9 7 6 12 12 H 1.09002 * 109.46725 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47188 * 240.00300 * 11 9 7 14 14 C 1.50697 * 109.47081 * 119.99864 * 11 9 7 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46980 * 89.99582 * 18 16 14 20 20 H 1.48493 * 109.47135 * 209.99651 * 18 16 14 21 21 H 1.48498 * 109.47274 * 330.00048 * 18 16 14 22 22 C 1.34665 * 120.74874 * 359.48460 * 5 4 3 23 23 O 1.22060 * 119.97851 * 180.27519 * 22 5 4 24 24 C 1.36405 * 120.36580 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47347 * 269.98129 * 1 2 3 26 26 H 1.09004 * 109.46651 * 29.98133 * 1 2 3 27 27 H 1.09000 * 109.46711 * 149.97995 * 1 2 3 28 28 H 1.07996 * 120.02175 * 0.03320 * 3 2 1 29 29 H 1.07997 * 119.64530 * 180.27092 * 4 3 2 30 30 H 1.08994 * 109.47287 * 149.72681 * 6 5 4 31 31 H 1.09006 * 109.47194 * 29.72029 * 6 5 4 32 32 H 1.09003 * 109.46975 * 269.99637 * 10 9 7 33 33 H 1.08995 * 109.47277 * 29.99688 * 10 9 7 34 34 H 1.09003 * 109.46743 * 150.00175 * 10 9 7 35 35 H 1.09002 * 109.47153 * 299.99573 * 13 11 9 36 36 H 1.09001 * 109.46832 * 179.97438 * 13 11 9 37 37 H 1.09004 * 109.47261 * 59.99745 * 13 11 9 38 38 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.34877 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0047 5 7 4.2539 0.0272 -0.0008 6 6 5.7188 0.0440 -0.0007 7 6 6.2211 0.0497 -1.4215 8 8 5.4331 0.0410 -2.3434 9 7 7.5461 0.0654 -1.6678 10 6 8.4980 0.0763 -0.5542 11 6 8.0345 0.0714 -3.0490 12 1 7.1868 0.0620 -3.7341 13 6 8.8991 -1.1676 -3.2896 14 6 8.8571 1.3117 -3.2854 15 1 9.0020 2.0240 -2.4866 16 6 9.4248 1.5371 -4.5215 17 7 9.2488 0.6696 -5.4941 18 14 10.4451 3.0742 -4.8145 19 1 11.8666 2.7943 -4.4887 20 1 10.3340 3.4780 -6.2392 21 1 9.9459 4.1723 -3.9484 22 6 3.6016 -1.1509 -0.0007 23 8 4.2312 -2.1966 -0.0007 24 6 2.1966 -1.1769 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6823 2.1485 0.0005 29 1 4.1104 2.1343 0.0091 30 1 6.0923 -0.8417 0.5131 31 1 6.0719 0.9382 0.5130 32 1 8.7220 1.1067 -0.2778 33 1 8.0637 -0.4428 0.3002 34 1 9.4166 -0.4266 -0.8565 35 1 9.7469 -1.1578 -2.6045 36 1 9.2621 -1.1633 -4.3174 37 1 8.3041 -2.0648 -3.1186 38 1 9.6478 0.8283 -6.3638 39 1 1.6683 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194591839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:26 Heat of formation + Delta-G solvation = -56.361757 kcal Electronic energy + Delta-G solvation = -21842.444573 eV Core-core repulsion = 18556.956292 eV Total energy + Delta-G solvation = -3285.488282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.50032 -40.54811 -38.09184 -37.29783 -36.17252 -34.85706 -32.06661 -31.01821 -30.21784 -27.88557 -27.56688 -27.25808 -24.64373 -23.43988 -22.34552 -20.30675 -18.67601 -18.56892 -18.49310 -17.97708 -17.15469 -16.98944 -16.41909 -16.33094 -15.82027 -15.16876 -15.04425 -14.74402 -14.37751 -14.21435 -14.12832 -13.56827 -13.51476 -13.33365 -13.16315 -12.98808 -12.93519 -12.82770 -12.70113 -12.62263 -12.45130 -12.22803 -12.13585 -11.23232 -11.11557 -11.06338 -10.58165 -10.43462 -9.41347 -8.97476 -8.15579 -6.33359 -0.10278 0.92602 1.42227 1.43710 1.51969 1.54622 1.62605 2.25431 2.44948 2.72441 3.12674 3.55892 3.65080 3.74255 3.88145 4.05121 4.14983 4.32457 4.37602 4.44182 4.65032 4.75375 4.80412 4.82129 4.85607 4.90831 4.99794 5.02838 5.11850 5.25048 5.41146 5.48730 5.53993 5.62902 5.68177 5.97054 6.08479 6.11606 6.69655 6.74506 6.98262 7.22184 7.40825 8.89342 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.004234 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.307163 B = 6611.481699 C = 6931.337263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.033 3.967 3 C -0.229 4.229 4 C 0.136 3.864 5 N -0.483 5.483 6 C 0.081 3.919 7 C 0.481 3.519 8 O -0.598 6.598 9 N -0.595 5.595 10 C 0.075 3.925 11 C 0.263 3.737 12 H 0.004 0.996 13 C -0.135 4.135 14 C -0.535 4.535 15 H 0.069 0.931 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.970 3.030 19 H -0.268 1.268 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.500 3.500 23 O -0.614 6.614 24 C -0.291 4.291 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.185 0.815 29 H 0.196 0.804 30 H 0.128 0.872 31 H 0.170 0.830 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.010 0.990 38 H 0.264 0.736 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 5.281 16.535 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 C -0.251 4.251 4 C 0.010 3.990 5 N -0.192 5.192 6 C -0.044 4.044 7 C 0.269 3.731 8 O -0.480 6.480 9 N -0.325 5.325 10 C -0.067 4.067 11 C 0.160 3.840 12 H 0.022 0.978 13 C -0.194 4.194 14 C -0.574 4.574 15 H 0.087 0.913 16 C -0.188 4.188 17 N -0.560 5.560 18 Si 0.795 3.205 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.189 1.189 22 C 0.306 3.694 23 O -0.503 6.503 24 C -0.313 4.313 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.202 0.798 29 H 0.213 0.787 30 H 0.146 0.854 31 H 0.187 0.813 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.276 4.588 15.880 20.009 hybrid contribution 0.782 0.113 -0.969 1.251 sum -10.493 4.701 14.911 18.829 Atomic orbital electron populations 1.21030 0.87549 1.04543 1.04514 1.20666 0.98721 0.91890 0.85830 1.21063 0.92093 1.00035 1.11950 1.22684 0.94666 0.89638 0.92023 1.45138 1.07910 1.07693 1.58436 1.22007 0.79113 1.09149 0.94102 1.21382 0.82905 0.76734 0.92098 1.90662 1.56303 1.53083 1.47989 1.48217 1.05253 1.69793 1.09252 1.21960 0.93607 1.03128 0.87963 1.18541 0.92725 0.94707 0.77979 0.97821 1.21912 0.98935 0.95395 1.03111 1.21552 1.31838 1.06139 0.97837 0.91302 1.25823 0.97508 0.99926 0.95521 1.70046 1.45402 1.37197 1.03391 0.85369 0.78924 0.79071 0.77120 1.19374 1.21466 1.18907 1.17613 0.90520 0.82570 0.78744 1.90882 1.70363 1.32266 1.56739 1.21895 0.91225 1.00980 1.17162 0.88001 0.88777 0.90894 0.79783 0.78723 0.85407 0.81260 0.90814 0.88920 0.91061 0.92890 0.91273 0.97048 0.92683 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.03 71.24 0.71 -0.74 16 2 C 0.03 0.68 5.89 -19.82 -0.12 0.57 16 3 C -0.23 -4.08 9.71 22.08 0.21 -3.87 16 4 C 0.14 2.90 10.28 83.42 0.86 3.76 16 5 N -0.48 -14.53 2.07 -655.07 -1.36 -15.89 16 6 C 0.08 2.32 4.37 85.63 0.37 2.69 16 7 C 0.48 20.23 7.74 87.66 0.68 20.91 16 8 O -0.60 -31.76 15.76 -3.04 -0.05 -31.81 16 9 N -0.59 -25.13 2.75 -826.79 -2.28 -27.40 16 10 C 0.08 2.23 9.48 127.77 1.21 3.44 16 11 C 0.26 13.93 2.63 44.24 0.12 14.05 16 12 H 0.00 0.25 6.90 -2.39 -0.02 0.23 16 13 C -0.13 -6.81 8.95 71.98 0.64 -6.17 16 14 C -0.54 -28.65 8.37 25.60 0.21 -28.44 16 15 H 0.07 3.47 7.65 -2.91 -0.02 3.45 16 16 C 0.01 0.63 5.30 84.66 0.45 1.08 16 17 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 18 Si 0.97 42.27 29.54 68.60 2.03 44.30 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 22 C 0.50 18.30 7.40 84.82 0.63 18.93 16 23 O -0.61 -27.88 16.64 -5.51 -0.09 -27.98 16 24 C -0.29 -8.53 9.65 22.40 0.22 -8.31 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.81 8.10 -2.38 -0.02 0.79 16 27 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 28 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 29 H 0.20 2.64 8.03 -2.91 -0.02 2.61 16 30 H 0.13 3.59 6.65 -2.39 -0.02 3.58 16 31 H 0.17 2.90 7.97 -2.38 -0.02 2.88 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.00 6.44 -2.39 -0.02 1.99 16 34 H 0.07 2.21 6.43 -2.39 -0.02 2.19 16 35 H 0.05 2.38 6.66 -2.39 -0.02 2.36 16 36 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 37 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -85.28 327.05 5.75 -79.53 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.05 Total: 14.82 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.20 Total: 17.89 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -3.39 Total: -96.76 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.14 Total: -59.78 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -85.28 5.75 -79.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194591839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.172 kcal (2) G-P(sol) polarization free energy of solvation -85.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds