Wall clock time and date at job start Mon Mar 30 2020 23:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35979 * 117.00032 * 2 1 4 4 C 1.38546 * 120.08133 * 359.97378 * 3 2 1 5 5 C 1.38248 * 120.01521 * 180.02562 * 4 3 2 6 6 C 1.38276 * 120.17577 * 359.97438 * 5 4 3 7 7 C 1.38203 * 120.16205 * 359.76978 * 6 5 4 8 8 C 1.50702 * 120.00775 * 180.27485 * 7 6 5 9 9 C 1.38710 * 119.98232 * 0.50482 * 7 6 5 10 10 N 1.40175 * 120.08429 * 179.74166 * 9 7 6 11 11 C 1.34767 * 119.99647 * 95.26233 * 10 9 7 12 12 O 1.21593 * 120.00315 * 355.17868 * 11 10 9 13 13 N 1.34782 * 119.99988 * 174.89894 * 11 10 9 14 14 C 1.46495 * 119.99615 * 0.02562 * 13 11 10 15 15 C 1.46501 * 119.99901 * 180.02562 * 13 11 10 16 16 C 1.50698 * 109.47187 * 90.00579 * 15 13 11 17 17 H 1.07995 * 119.99777 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00120 * 179.97438 * 16 15 13 19 19 N 1.31521 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47252 * 89.99950 * 20 18 16 22 22 H 1.48496 * 109.47246 * 210.00185 * 20 18 16 23 23 H 1.48503 * 109.47405 * 330.00085 * 20 18 16 24 24 H 1.08997 * 109.47344 * 300.00043 * 1 2 3 25 25 H 1.09004 * 109.47124 * 60.00787 * 1 2 3 26 26 H 1.09009 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99163 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.91115 * 180.02562 * 5 4 3 29 29 H 1.08005 * 119.91518 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47078 * 270.22819 * 8 7 6 31 31 H 1.08989 * 109.46907 * 30.23035 * 8 7 6 32 32 H 1.08998 * 109.47069 * 150.23036 * 8 7 6 33 33 H 0.96998 * 119.99776 * 275.26002 * 10 9 7 34 34 H 1.08998 * 109.47641 * 90.00140 * 14 13 11 35 35 H 1.09003 * 109.46613 * 209.99776 * 14 13 11 36 36 H 1.08997 * 109.47127 * 329.99330 * 14 13 11 37 37 H 1.09000 * 109.46582 * 210.00302 * 15 13 11 38 38 H 1.08993 * 109.47285 * 330.00052 * 15 13 11 39 39 H 0.96993 * 119.99624 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3031 3.6807 -0.0005 7 6 4.0613 2.5252 0.0053 8 6 5.5659 2.6110 0.0122 9 6 3.4371 1.2865 0.0001 10 7 4.2041 0.1132 0.0006 11 6 4.4785 -0.5119 1.1626 12 8 4.1365 -0.0126 2.2172 13 7 5.1271 -1.6934 1.1554 14 6 5.5342 -2.2977 -0.1154 15 6 5.4249 -2.3732 2.4186 16 6 4.2831 -3.2888 2.7776 17 1 3.4216 -3.3572 2.1299 18 6 4.3383 -4.0392 3.9330 19 7 5.3877 -3.9563 4.7214 20 14 2.9227 -5.1737 4.3784 21 1 3.1604 -6.5164 3.7903 22 1 2.8276 -5.2901 5.8557 23 1 1.6545 -4.6164 3.8432 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2148 2.3195 -0.0006 28 1 1.3339 4.5112 -0.0011 29 1 3.7902 4.6447 -0.0005 30 1 5.9332 2.6337 -1.0138 31 1 5.8756 3.5191 0.5291 32 1 5.9770 1.7422 0.5261 33 1 4.5372 -0.2488 -0.8354 34 1 6.5349 -1.9541 -0.3772 35 1 5.5370 -3.3833 -0.0170 36 1 4.8335 -2.0056 -0.8976 37 1 6.3387 -2.9573 2.3101 38 1 5.5585 -1.6326 3.2070 39 1 5.4263 -4.4839 5.5344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195044478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:05 Heat of formation + Delta-G solvation = -28.030251 kcal Electronic energy + Delta-G solvation = -22117.575104 eV Core-core repulsion = 18833.315368 eV Total energy + Delta-G solvation = -3284.259735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47782 -38.90184 -37.47555 -34.80052 -34.14096 -32.49388 -31.88899 -29.41643 -27.58536 -27.41482 -26.42269 -25.54465 -23.18747 -21.83000 -21.04385 -19.39247 -17.89412 -17.33940 -16.53354 -16.47394 -16.23991 -15.52852 -14.97402 -14.51571 -14.41337 -13.90056 -13.81033 -13.57909 -13.43715 -12.91551 -12.44465 -12.21227 -12.11329 -12.08531 -11.81132 -11.77012 -11.56693 -11.13151 -10.98375 -10.87874 -10.83759 -10.48874 -10.07333 -9.55599 -9.19776 -8.82037 -8.53503 -8.35289 -8.01508 -7.50381 -5.95770 -3.99249 1.33393 1.52907 3.34475 3.34969 3.40975 3.42882 3.48880 3.83288 4.09788 4.49310 4.70000 4.87196 4.91763 5.09336 5.21442 5.28042 5.36740 5.38050 5.45303 5.55746 5.63819 5.68594 5.74176 5.82674 5.96757 6.17502 6.24194 6.34967 6.44894 6.60489 6.76745 6.89375 7.14641 7.45743 7.61427 7.66887 7.81961 8.04673 8.34421 8.80594 9.02841 9.49366 9.67125 11.12219 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.005406 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.560455 B = 5178.222855 C = 5932.931965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.140 3.860 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.042 4.042 8 C -0.111 4.111 9 C 0.134 3.866 10 N -0.703 5.703 11 C 0.706 3.294 12 O -0.575 6.575 13 N -0.617 5.617 14 C 0.086 3.914 15 C 0.261 3.739 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.897 5.897 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.396 0.604 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 12.328 -14.768 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.213 6.213 3 C 0.092 3.908 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.044 4.044 8 C -0.167 4.167 9 C 0.040 3.960 10 N -0.359 5.359 11 C 0.409 3.591 12 O -0.451 6.451 13 N -0.353 5.353 14 C -0.058 4.058 15 C 0.142 3.858 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.537 5.537 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.805 12.333 -13.762 19.094 hybrid contribution -1.024 -0.814 -0.069 1.310 sum -5.829 11.519 -13.831 18.920 Atomic orbital electron populations 1.23049 0.78824 1.03967 1.00863 1.86220 1.20892 1.26258 1.87942 1.19408 0.91775 0.84685 0.94943 1.21085 0.99831 0.92086 1.10403 1.20867 0.94513 0.96745 0.97559 1.20784 0.93584 0.97472 1.05742 1.19964 0.96542 0.91438 0.96432 1.20711 0.90666 1.03340 1.02012 1.16396 0.86206 0.86120 1.07253 1.42502 1.58142 1.26471 1.08818 1.15869 0.79103 0.81017 0.83157 1.90896 1.57566 1.67021 1.29641 1.47405 1.59602 1.19427 1.08837 1.21541 0.98022 1.00231 0.86031 1.19185 0.95834 0.91857 0.78966 1.21491 1.04145 1.23312 1.07027 0.92498 1.24924 0.96074 0.97209 0.95987 1.69938 1.28874 1.41372 1.13488 0.86510 0.82759 0.80681 0.77540 1.20714 1.21158 1.19998 0.92688 0.92991 0.88307 0.85478 0.85872 0.85797 0.91146 0.91357 0.90927 0.76622 0.94006 0.90611 0.93092 0.94988 0.93859 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.30 -5.23 10.24 -19.67 -0.20 -5.43 16 3 C 0.14 2.33 6.70 -39.08 -0.26 2.07 16 4 C -0.21 -2.89 9.04 -39.46 -0.36 -3.24 16 5 C -0.08 -0.94 10.04 -39.56 -0.40 -1.33 16 6 C -0.16 -1.96 9.69 -39.58 -0.38 -2.34 16 7 C -0.04 -0.62 5.89 -104.46 -0.62 -1.23 16 8 C -0.11 -1.40 9.76 36.01 0.35 -1.05 16 9 C 0.13 2.30 5.28 -83.48 -0.44 1.86 16 10 N -0.70 -12.58 3.87 -14.10 -0.05 -12.64 16 11 C 0.71 16.27 7.91 -86.92 -0.69 15.59 16 12 O -0.58 -16.10 15.90 5.28 0.08 -16.02 16 13 N -0.62 -13.96 2.86 -188.75 -0.54 -14.50 16 14 C 0.09 1.44 10.16 59.84 0.61 2.05 16 15 C 0.26 7.14 5.16 -5.19 -0.03 7.11 16 16 C -0.52 -15.38 9.39 -34.44 -0.32 -15.70 16 17 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 20 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 26 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 27 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.76 8.09 -51.94 -0.42 0.34 16 32 H 0.07 1.11 7.17 -51.93 -0.37 0.73 16 33 H 0.40 5.81 6.63 -40.82 -0.27 5.54 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 36 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 37 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -36.82 331.50 -7.05 -43.87 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.41 Total: 2.06 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.64 Total: 6.76 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.14 Total: -53.76 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.12 Total: -21.45 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.82 -7.05 -43.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.838 kcal (2) G-P(sol) polarization free energy of solvation -36.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds