Wall clock time and date at job start Mon Mar 30 2020 23:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35979 * 117.00032 * 2 1 4 4 C 1.38546 * 120.08133 * 359.97378 * 3 2 1 5 5 C 1.38248 * 120.01521 * 180.02562 * 4 3 2 6 6 C 1.38276 * 120.17577 * 359.97438 * 5 4 3 7 7 C 1.38203 * 120.16205 * 359.76978 * 6 5 4 8 8 C 1.50702 * 120.00775 * 180.27485 * 7 6 5 9 9 C 1.38710 * 119.98232 * 0.50482 * 7 6 5 10 10 N 1.40175 * 120.08429 * 179.74166 * 9 7 6 11 11 C 1.34767 * 119.99647 * 95.26233 * 10 9 7 12 12 O 1.21593 * 120.00315 * 355.17868 * 11 10 9 13 13 N 1.34782 * 119.99988 * 174.89894 * 11 10 9 14 14 C 1.46495 * 119.99615 * 0.02562 * 13 11 10 15 15 C 1.46501 * 119.99901 * 180.02562 * 13 11 10 16 16 C 1.50698 * 109.47187 * 90.00579 * 15 13 11 17 17 H 1.07995 * 119.99777 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00120 * 179.97438 * 16 15 13 19 19 N 1.31521 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47252 * 89.99950 * 20 18 16 22 22 H 1.48496 * 109.47246 * 210.00185 * 20 18 16 23 23 H 1.48503 * 109.47405 * 330.00085 * 20 18 16 24 24 H 1.08997 * 109.47344 * 300.00043 * 1 2 3 25 25 H 1.09004 * 109.47124 * 60.00787 * 1 2 3 26 26 H 1.09009 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99163 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.91115 * 180.02562 * 5 4 3 29 29 H 1.08005 * 119.91518 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47078 * 270.22819 * 8 7 6 31 31 H 1.08989 * 109.46907 * 30.23035 * 8 7 6 32 32 H 1.08998 * 109.47069 * 150.23036 * 8 7 6 33 33 H 0.96998 * 119.99776 * 275.26002 * 10 9 7 34 34 H 1.08998 * 109.47641 * 90.00140 * 14 13 11 35 35 H 1.09003 * 109.46613 * 209.99776 * 14 13 11 36 36 H 1.08997 * 109.47127 * 329.99330 * 14 13 11 37 37 H 1.09000 * 109.46582 * 210.00302 * 15 13 11 38 38 H 1.08993 * 109.47285 * 330.00052 * 15 13 11 39 39 H 0.96993 * 119.99624 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3031 3.6807 -0.0005 7 6 4.0613 2.5252 0.0053 8 6 5.5659 2.6110 0.0122 9 6 3.4371 1.2865 0.0001 10 7 4.2041 0.1132 0.0006 11 6 4.4785 -0.5119 1.1626 12 8 4.1365 -0.0126 2.2172 13 7 5.1271 -1.6934 1.1554 14 6 5.5342 -2.2977 -0.1154 15 6 5.4249 -2.3732 2.4186 16 6 4.2831 -3.2888 2.7776 17 1 3.4216 -3.3572 2.1299 18 6 4.3383 -4.0392 3.9330 19 7 5.3877 -3.9563 4.7214 20 14 2.9227 -5.1737 4.3784 21 1 3.1604 -6.5164 3.7903 22 1 2.8276 -5.2901 5.8557 23 1 1.6545 -4.6164 3.8432 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2148 2.3195 -0.0006 28 1 1.3339 4.5112 -0.0011 29 1 3.7902 4.6447 -0.0005 30 1 5.9332 2.6337 -1.0138 31 1 5.8756 3.5191 0.5291 32 1 5.9770 1.7422 0.5261 33 1 4.5372 -0.2488 -0.8354 34 1 6.5349 -1.9541 -0.3772 35 1 5.5370 -3.3833 -0.0170 36 1 4.8335 -2.0056 -0.8976 37 1 6.3387 -2.9573 2.3101 38 1 5.5585 -1.6326 3.2070 39 1 5.4263 -4.4839 5.5344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195044478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:05 Heat of formation + Delta-G solvation = -53.206462 kcal Electronic energy + Delta-G solvation = -22118.666826 eV Core-core repulsion = 18833.315368 eV Total energy + Delta-G solvation = -3285.351458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76363 -40.42717 -38.61638 -36.60470 -35.70923 -34.60328 -33.00248 -30.73678 -29.44593 -28.40087 -27.58640 -27.13609 -25.09142 -23.14615 -22.14828 -21.03450 -19.29831 -18.69482 -18.65383 -17.91159 -17.46515 -16.80371 -16.61385 -16.14756 -15.96776 -15.27212 -15.01426 -14.85548 -14.60045 -14.42113 -14.24842 -13.81872 -13.47663 -13.20007 -13.13218 -13.05929 -12.83131 -12.81059 -12.60190 -12.52992 -12.20206 -12.00512 -11.86572 -11.72418 -11.11206 -10.62817 -10.35122 -9.63452 -9.35448 -9.10970 -8.20647 -6.35137 0.25939 0.46624 1.34691 1.38348 1.48701 1.86457 2.27228 2.38964 2.43665 2.77203 3.07485 3.18854 3.88144 3.98208 4.16136 4.29750 4.33337 4.34836 4.39649 4.45662 4.64451 4.65657 4.66371 4.77986 4.83419 4.85248 4.98607 5.18831 5.21061 5.30722 5.44460 5.55124 5.57314 5.72308 5.80040 5.93428 6.08828 6.10863 6.50011 6.73366 7.16320 7.31906 7.78876 8.86018 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.005406 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.560455 B = 5178.222855 C = 5932.931965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.339 6.339 3 C 0.113 3.887 4 C -0.218 4.218 5 C -0.070 4.070 6 C -0.156 4.156 7 C -0.054 4.054 8 C -0.107 4.107 9 C 0.088 3.912 10 N -0.679 5.679 11 C 0.704 3.296 12 O -0.635 6.635 13 N -0.625 5.625 14 C 0.082 3.918 15 C 0.278 3.722 16 C -0.540 4.540 17 H 0.046 0.954 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.279 1.279 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.151 0.849 28 H 0.163 0.837 29 H 0.157 0.843 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.411 0.589 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.029 0.971 38 H -0.004 1.004 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 13.430 -16.428 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.253 6.253 3 C 0.066 3.934 4 C -0.237 4.237 5 C -0.088 4.088 6 C -0.174 4.174 7 C -0.056 4.056 8 C -0.164 4.164 9 C -0.005 4.005 10 N -0.334 5.334 11 C 0.407 3.593 12 O -0.516 6.516 13 N -0.360 5.360 14 C -0.060 4.060 15 C 0.156 3.844 16 C -0.579 4.579 17 H 0.065 0.935 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.792 3.208 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.202 1.202 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.250 0.750 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.014 0.986 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.092 13.437 -15.514 21.409 hybrid contribution -0.630 -1.046 0.399 1.284 sum -6.722 12.392 -15.114 20.669 Atomic orbital electron populations 1.23293 0.76745 1.04959 1.02347 1.86143 1.23337 1.27399 1.88386 1.19718 0.91978 0.85537 0.96180 1.21438 1.01036 0.91631 1.09565 1.21381 0.94717 0.97569 0.95087 1.21211 0.94034 0.97942 1.04262 1.20279 0.97653 0.91387 0.96259 1.20724 0.89627 1.02562 1.03446 1.16874 0.86861 0.86356 1.10421 1.42099 1.57326 1.26457 1.07565 1.16054 0.78588 0.80946 0.83753 1.90829 1.59964 1.68589 1.32217 1.47291 1.59793 1.19594 1.09359 1.21825 1.00452 0.99834 0.83925 1.18650 0.95278 0.90314 0.80142 1.21689 1.04393 1.24208 1.07611 0.93531 1.25838 0.98878 0.98713 0.95644 1.70050 1.30710 1.42142 1.13894 0.85419 0.78791 0.79090 0.77501 1.18510 1.20380 1.20248 0.92519 0.90038 0.87720 0.83098 0.81918 0.82557 0.88485 0.89698 0.94215 0.74960 0.90893 0.90999 0.90255 0.95288 0.98563 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.60 16 2 O -0.34 -11.91 10.24 -93.31 -0.96 -12.87 16 3 C 0.11 3.75 6.70 22.60 0.15 3.90 16 4 C -0.22 -5.41 9.04 22.35 0.20 -5.21 16 5 C -0.07 -1.43 10.04 22.28 0.22 -1.20 16 6 C -0.16 -3.44 9.69 22.27 0.22 -3.22 16 7 C -0.05 -1.54 5.89 -19.76 -0.12 -1.65 16 8 C -0.11 -2.61 9.76 71.24 0.70 -1.91 16 9 C 0.09 3.03 5.28 38.17 0.20 3.23 16 10 N -0.68 -24.76 3.87 -316.80 -1.23 -25.98 16 11 C 0.70 33.79 7.91 179.06 1.42 35.21 16 12 O -0.64 -37.62 15.90 -4.01 -0.06 -37.69 16 13 N -0.63 -29.27 2.86 -869.33 -2.48 -31.75 16 14 C 0.08 2.70 10.16 127.77 1.30 3.99 16 15 C 0.28 15.95 5.16 85.63 0.44 16.39 16 16 C -0.54 -32.96 9.39 25.60 0.24 -32.72 16 17 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 20 Si 0.97 46.69 29.54 68.60 2.03 48.71 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H 0.06 1.28 7.66 -2.39 -0.02 1.26 16 25 H 0.08 1.38 7.66 -2.39 -0.02 1.37 16 26 H 0.10 2.25 8.14 -2.38 -0.02 2.24 16 27 H 0.15 2.88 6.30 -2.91 -0.02 2.86 16 28 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 32 H 0.04 1.23 7.17 -2.39 -0.02 1.21 16 33 H 0.41 11.96 6.63 -92.71 -0.61 11.34 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.08 2.13 6.44 -2.39 -0.02 2.12 16 37 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -84.75 331.50 4.57 -80.18 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.44 Total: 17.59 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 6.54 Total: 19.35 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -3.42 Total: -115.27 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -1.02 Total: -50.55 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -84.75 4.57 -80.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.969 kcal (2) G-P(sol) polarization free energy of solvation -84.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds