Wall clock time and date at job start Tue Mar 31 2020 01:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34859 * 119.10022 * 2 1 4 4 C 1.41670 * 119.34043 * 180.27783 * 3 2 1 5 5 O 1.22084 * 121.07202 * 179.76044 * 4 3 2 6 6 C 1.47109 * 117.86269 * 359.48927 * 4 3 2 7 7 C 1.47284 * 120.88551 * 180.22846 * 6 4 3 8 8 O 1.21618 * 119.99809 * 304.83339 * 7 6 4 9 9 N 1.34780 * 119.99850 * 124.83416 * 7 6 4 10 10 C 1.46495 * 119.99660 * 184.19262 * 9 7 6 11 11 C 1.50703 * 109.47479 * 90.00079 * 10 9 7 12 12 H 1.07997 * 119.99858 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00082 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99954 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47241 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46849 * 119.99992 * 15 13 11 18 18 H 1.48503 * 109.46834 * 240.00204 * 15 13 11 19 19 C 1.46496 * 120.00104 * 4.19019 * 9 7 6 20 20 C 1.52997 * 109.47407 * 114.10391 * 19 9 7 21 21 C 1.53005 * 109.47108 * 234.10649 * 19 9 7 22 22 C 1.37991 * 118.23369 * 0.25273 * 6 4 3 23 23 N 1.34357 * 120.36944 * 359.97438 * 22 6 4 24 24 H 0.97001 * 118.80251 * 179.97438 * 23 22 6 25 25 H 1.09002 * 109.47436 * 270.24986 * 1 2 3 26 26 H 1.09002 * 109.47244 * 30.24789 * 1 2 3 27 27 H 1.09002 * 109.47203 * 150.24459 * 1 2 3 28 28 H 1.07999 * 120.33364 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.47085 * 210.00103 * 10 9 7 30 30 H 1.09000 * 109.47429 * 329.99453 * 10 9 7 31 31 H 0.96997 * 119.99737 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47270 * 354.10061 * 19 9 7 33 33 H 1.09001 * 109.46741 * 59.99913 * 20 19 9 34 34 H 1.08998 * 109.47241 * 179.97438 * 20 19 9 35 35 H 1.08998 * 109.46984 * 300.00219 * 20 19 9 36 36 H 1.09009 * 109.46950 * 60.00022 * 21 19 9 37 37 H 1.08998 * 109.47243 * 179.97438 * 21 19 9 38 38 H 1.09001 * 109.47038 * 300.00085 * 21 19 9 39 39 H 1.07998 * 119.81414 * 179.97438 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1843 -0.0060 5 8 4.2052 2.2326 -0.0105 6 6 4.2725 -0.1133 -0.0004 7 6 5.7436 -0.1848 -0.0011 8 8 6.3796 0.3826 -0.8687 9 7 6.3850 -0.8789 0.9598 10 6 7.8490 -0.8745 1.0132 11 6 8.3168 0.2674 1.8782 12 1 7.5957 0.9244 2.3415 13 6 9.6654 0.4734 2.0781 14 7 10.5435 -0.3265 1.5134 15 14 10.2452 1.8893 3.1497 16 1 9.0686 2.6360 3.6626 17 1 11.0301 1.3562 4.2920 18 1 11.0979 2.8015 2.3459 19 6 5.6182 -1.6378 1.9509 20 6 5.8847 -3.1330 1.7662 21 6 6.0434 -1.2140 3.3583 22 6 3.5077 -1.2618 0.0050 23 7 2.1663 -1.1847 0.0056 24 1 1.6509 -2.0064 0.0090 25 1 -0.3634 0.0045 1.0277 26 1 -0.3634 0.8878 -0.5177 27 1 -0.3634 -0.8922 -0.5100 28 1 1.6136 2.1083 0.0004 29 1 8.2001 -1.8167 1.4341 30 1 8.2489 -0.7551 0.0062 31 1 11.4922 -0.1814 1.6537 32 1 4.5548 -1.4390 1.8175 33 1 6.9480 -3.3317 1.8998 34 1 5.3144 -3.6975 2.5039 35 1 5.5817 -3.4349 0.7636 36 1 5.8535 -0.1486 3.4899 37 1 5.4725 -1.7782 4.0957 38 1 7.1068 -1.4127 3.4918 39 1 3.9899 -2.2281 0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219988810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:51 Heat of formation + Delta-G solvation = -37.920784 kcal Electronic energy + Delta-G solvation = -22324.421772 eV Core-core repulsion = 19039.733151 eV Total energy + Delta-G solvation = -3284.688621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95761 -38.77431 -37.47406 -35.74281 -33.46503 -32.67212 -31.28104 -30.72091 -28.55983 -26.94044 -26.65028 -24.02511 -22.93275 -22.03771 -21.30527 -19.51383 -17.52197 -17.49108 -16.46423 -16.31418 -15.83201 -15.28634 -14.91332 -14.39466 -14.17681 -13.91727 -13.48640 -13.34996 -13.28057 -13.09711 -12.86626 -12.74215 -12.52550 -12.20452 -12.04040 -11.63931 -11.60333 -11.12532 -10.88782 -10.80101 -10.55308 -10.33176 -9.93228 -9.47186 -9.38220 -9.27154 -8.74462 -8.31591 -7.91129 -7.53450 -5.92859 -3.94871 1.09138 1.35904 2.63969 3.38723 3.45372 3.47674 3.54847 3.80328 4.12689 4.17132 4.53231 4.56080 4.66269 4.91227 4.99270 5.09845 5.25014 5.35594 5.41090 5.44747 5.54863 5.65893 5.70653 5.86860 5.95819 6.11170 6.25494 6.37301 6.42724 6.62974 6.71195 6.80926 7.03464 7.20462 7.57394 7.68849 8.05501 8.34821 8.37247 8.54336 9.05047 9.24895 9.69247 11.15397 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.005461 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.645193 B = 5126.210215 C = 5633.507941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.154 3.846 3 C -0.275 4.275 4 C 0.407 3.593 5 O -0.489 6.489 6 C -0.270 4.270 7 C 0.570 3.430 8 O -0.523 6.523 9 N -0.589 5.589 10 C 0.248 3.752 11 C -0.515 4.515 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.283 1.283 19 C 0.126 3.874 20 C -0.164 4.164 21 C -0.154 4.154 22 C 0.145 3.855 23 N -0.582 5.582 24 H 0.417 0.583 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.973 -9.054 0.394 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.047 3.953 3 C -0.300 4.300 4 C 0.293 3.707 5 O -0.370 6.370 6 C -0.281 4.281 7 C 0.355 3.645 8 O -0.399 6.399 9 N -0.322 5.322 10 C 0.129 3.871 11 C -0.554 4.554 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.538 5.538 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.209 1.209 19 C 0.021 3.979 20 C -0.222 4.222 21 C -0.212 4.212 22 C 0.016 3.984 23 N -0.190 5.190 24 H 0.253 0.747 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.045 -8.176 -0.087 23.513 hybrid contribution 0.196 0.302 0.675 0.765 sum -21.850 -7.874 0.588 23.233 Atomic orbital electron populations 1.21064 0.88192 1.04623 1.04151 1.20201 0.94527 0.85678 0.94906 1.22176 0.96223 0.97210 1.14359 1.18224 0.88313 0.87915 0.76234 1.90821 1.70108 1.33462 1.42607 1.22809 0.95948 0.94911 1.14388 1.17409 0.85097 0.79552 0.82424 1.90771 1.67245 1.44556 1.37282 1.48257 1.09307 1.47376 1.27249 1.19240 0.72124 0.97131 0.98622 1.21519 0.91740 1.12998 1.29124 0.92248 1.24907 0.96599 0.96415 0.96239 1.69946 1.01516 1.38050 1.44247 0.86495 0.78735 0.82545 0.80036 1.19732 1.21138 1.20939 1.21122 0.95513 0.90951 0.90271 1.22231 1.03630 0.95720 1.00601 1.22094 1.03571 1.01361 0.94171 1.22130 0.82187 1.00052 0.94036 1.40612 1.05855 1.08555 1.63933 0.74731 0.89399 0.88945 0.90665 0.83350 0.94808 0.93894 0.92973 0.90830 0.91110 0.92220 0.93239 0.92426 0.93527 0.90112 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.02 36.00 0.36 -0.09 16 2 C 0.15 1.29 6.78 -82.14 -0.56 0.73 16 3 C -0.27 -3.60 9.57 -39.47 -0.38 -3.98 16 4 C 0.41 7.92 6.97 -34.68 -0.24 7.67 16 5 O -0.49 -12.24 17.47 4.84 0.08 -12.16 16 6 C -0.27 -4.91 5.01 -102.71 -0.51 -5.43 16 7 C 0.57 13.46 6.95 -12.58 -0.09 13.38 16 8 O -0.52 -15.14 16.57 5.26 0.09 -15.06 16 9 N -0.59 -13.11 2.38 -168.78 -0.40 -13.52 16 10 C 0.25 6.65 4.47 -5.19 -0.02 6.62 16 11 C -0.51 -15.13 7.85 -34.44 -0.27 -15.40 16 12 H 0.06 1.80 7.52 -52.49 -0.39 1.40 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 15 Si 0.89 23.01 29.54 -169.99 -5.02 17.98 16 16 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 19 C 0.13 2.09 2.51 -67.93 -0.17 1.92 16 20 C -0.16 -2.18 9.05 37.16 0.34 -1.84 16 21 C -0.15 -2.69 8.34 37.16 0.31 -2.38 16 22 C 0.14 1.64 8.62 -16.54 -0.14 1.49 16 23 N -0.58 -4.19 5.16 -9.00 -0.05 -4.24 16 24 H 0.42 1.07 8.70 -40.82 -0.35 0.72 16 25 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.32 8.06 -51.93 -0.42 -0.10 16 27 H 0.07 0.12 8.12 -51.93 -0.42 -0.30 16 28 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.03 0.89 6.72 -51.93 -0.35 0.54 16 30 H 0.04 1.32 7.37 -51.93 -0.38 0.93 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.07 1.03 4.64 -51.93 -0.24 0.79 16 33 H 0.07 1.11 6.91 -51.93 -0.36 0.75 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.58 7.29 -51.93 -0.38 0.20 16 36 H 0.06 1.12 7.95 -51.92 -0.41 0.70 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.62 6.94 -51.93 -0.36 1.26 16 39 H 0.17 1.50 6.38 -52.49 -0.34 1.16 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -41.46 324.73 -6.38 -47.84 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.23 Total: -3.49 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.48 Total: 4.36 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.29 Total: -44.37 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: 0.17 Total: -27.21 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -41.46 -6.38 -47.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219988810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.914 kcal (2) G-P(sol) polarization free energy of solvation -41.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds