Wall clock time and date at job start Tue Mar 31 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34859 * 119.10022 * 2 1 4 4 C 1.41670 * 119.34043 * 180.27783 * 3 2 1 5 5 O 1.22084 * 121.07202 * 179.76044 * 4 3 2 6 6 C 1.47109 * 117.86269 * 359.48927 * 4 3 2 7 7 C 1.47284 * 120.88551 * 180.22846 * 6 4 3 8 8 O 1.21618 * 119.99809 * 304.83339 * 7 6 4 9 9 N 1.34780 * 119.99850 * 124.83416 * 7 6 4 10 10 C 1.46495 * 119.99660 * 184.19262 * 9 7 6 11 11 C 1.50703 * 109.47479 * 90.00079 * 10 9 7 12 12 H 1.07997 * 119.99858 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00082 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99954 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47241 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46849 * 119.99992 * 15 13 11 18 18 H 1.48503 * 109.46834 * 240.00204 * 15 13 11 19 19 C 1.46496 * 120.00104 * 4.19019 * 9 7 6 20 20 C 1.52997 * 109.47407 * 114.10391 * 19 9 7 21 21 C 1.53005 * 109.47108 * 234.10649 * 19 9 7 22 22 C 1.37991 * 118.23369 * 0.25273 * 6 4 3 23 23 N 1.34357 * 120.36944 * 359.97438 * 22 6 4 24 24 H 0.97001 * 118.80251 * 179.97438 * 23 22 6 25 25 H 1.09002 * 109.47436 * 270.24986 * 1 2 3 26 26 H 1.09002 * 109.47244 * 30.24789 * 1 2 3 27 27 H 1.09002 * 109.47203 * 150.24459 * 1 2 3 28 28 H 1.07999 * 120.33364 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.47085 * 210.00103 * 10 9 7 30 30 H 1.09000 * 109.47429 * 329.99453 * 10 9 7 31 31 H 0.96997 * 119.99737 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47270 * 354.10061 * 19 9 7 33 33 H 1.09001 * 109.46741 * 59.99913 * 20 19 9 34 34 H 1.08998 * 109.47241 * 179.97438 * 20 19 9 35 35 H 1.08998 * 109.46984 * 300.00219 * 20 19 9 36 36 H 1.09009 * 109.46950 * 60.00022 * 21 19 9 37 37 H 1.08998 * 109.47243 * 179.97438 * 21 19 9 38 38 H 1.09001 * 109.47038 * 300.00085 * 21 19 9 39 39 H 1.07998 * 119.81414 * 179.97438 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1843 -0.0060 5 8 4.2052 2.2326 -0.0105 6 6 4.2725 -0.1133 -0.0004 7 6 5.7436 -0.1848 -0.0011 8 8 6.3796 0.3826 -0.8687 9 7 6.3850 -0.8789 0.9598 10 6 7.8490 -0.8745 1.0132 11 6 8.3168 0.2674 1.8782 12 1 7.5957 0.9244 2.3415 13 6 9.6654 0.4734 2.0781 14 7 10.5435 -0.3265 1.5134 15 14 10.2452 1.8893 3.1497 16 1 9.0686 2.6360 3.6626 17 1 11.0301 1.3562 4.2920 18 1 11.0979 2.8015 2.3459 19 6 5.6182 -1.6378 1.9509 20 6 5.8847 -3.1330 1.7662 21 6 6.0434 -1.2140 3.3583 22 6 3.5077 -1.2618 0.0050 23 7 2.1663 -1.1847 0.0056 24 1 1.6509 -2.0064 0.0090 25 1 -0.3634 0.0045 1.0277 26 1 -0.3634 0.8878 -0.5177 27 1 -0.3634 -0.8922 -0.5100 28 1 1.6136 2.1083 0.0004 29 1 8.2001 -1.8167 1.4341 30 1 8.2489 -0.7551 0.0062 31 1 11.4922 -0.1814 1.6537 32 1 4.5548 -1.4390 1.8175 33 1 6.9480 -3.3317 1.8998 34 1 5.3144 -3.6975 2.5039 35 1 5.5817 -3.4349 0.7636 36 1 5.8535 -0.1486 3.4899 37 1 5.4725 -1.7782 4.0957 38 1 7.1068 -1.4127 3.4918 39 1 3.9899 -2.2281 0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219988810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:50 Heat of formation + Delta-G solvation = -71.477247 kcal Electronic energy + Delta-G solvation = -22325.876890 eV Core-core repulsion = 19039.733151 eV Total energy + Delta-G solvation = -3286.143739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.54 seconds Orbital eigenvalues (eV) -42.09859 -40.37936 -38.84855 -37.47627 -35.07812 -34.16164 -32.57931 -32.38564 -29.84545 -28.45453 -27.96327 -25.43348 -24.68686 -23.20664 -22.71586 -20.87311 -18.99119 -18.70063 -18.53156 -17.64072 -17.17887 -16.92940 -16.33718 -16.01797 -15.60131 -15.49358 -14.87388 -14.64731 -14.49400 -14.27556 -14.06050 -13.84777 -13.60744 -13.43836 -13.30668 -13.25122 -12.98700 -12.87008 -12.78291 -12.58239 -12.25666 -12.13163 -11.71323 -11.56730 -10.98373 -10.64208 -10.41851 -10.26690 -9.46949 -9.13477 -8.22883 -6.33971 -0.02728 0.33065 1.28865 1.33515 1.44951 1.72731 1.84516 2.31538 2.41326 2.72153 3.05952 3.40939 3.59410 3.68218 3.95347 4.02018 4.18060 4.28789 4.40629 4.42104 4.76954 4.80872 4.83297 4.86991 4.88465 5.00618 5.03376 5.09672 5.21170 5.24593 5.37862 5.46525 5.54823 5.62851 5.71268 5.89102 6.10180 6.17618 6.71722 6.81125 7.08010 7.29017 7.50544 8.84333 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.005461 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.645193 B = 5126.210215 C = 5633.507941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.201 3.799 3 C -0.308 4.308 4 C 0.381 3.619 5 O -0.589 6.589 6 C -0.337 4.337 7 C 0.561 3.439 8 O -0.602 6.602 9 N -0.591 5.591 10 C 0.267 3.733 11 C -0.529 4.529 12 H 0.039 0.961 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.957 3.043 16 H -0.278 1.278 17 H -0.259 1.259 18 H -0.282 1.282 19 C 0.118 3.882 20 C -0.157 4.157 21 C -0.151 4.151 22 C 0.210 3.790 23 N -0.544 5.544 24 H 0.452 0.548 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.156 0.844 29 H 0.037 0.963 30 H -0.009 1.009 31 H 0.267 0.733 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.024 0.976 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.750 -12.630 1.849 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.091 3.909 3 C -0.331 4.331 4 C 0.276 3.724 5 O -0.479 6.479 6 C -0.348 4.348 7 C 0.350 3.650 8 O -0.483 6.483 9 N -0.322 5.322 10 C 0.145 3.855 11 C -0.568 4.568 12 H 0.057 0.943 13 C -0.188 4.188 14 N -0.565 5.565 15 Si 0.782 3.218 16 H -0.203 1.203 17 H -0.184 1.184 18 H -0.208 1.208 19 C 0.015 3.985 20 C -0.215 4.215 21 C -0.208 4.208 22 C 0.077 3.923 23 N -0.151 5.151 24 H 0.296 0.704 25 H 0.131 0.869 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.174 0.826 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -26.936 -11.868 1.413 29.468 hybrid contribution 1.457 1.206 0.219 1.904 sum -25.479 -10.662 1.632 27.668 Atomic orbital electron populations 1.21311 0.83206 1.06926 1.06301 1.20828 0.97005 0.84068 0.89030 1.21992 0.92984 1.00042 1.18089 1.19096 0.90944 0.87286 0.75087 1.90760 1.72174 1.36073 1.48905 1.22180 0.93012 0.97139 1.22455 1.18299 0.87629 0.77884 0.81199 1.90694 1.69661 1.47593 1.40365 1.48294 1.07774 1.47882 1.28257 1.18651 0.75540 0.96320 0.94944 1.21653 0.91931 1.13621 1.29591 0.94287 1.25723 0.96654 0.98932 0.97517 1.70034 1.01961 1.39411 1.45135 0.85528 0.78064 0.79260 0.78945 1.20309 1.18402 1.20802 1.21609 0.96369 0.92492 0.87989 1.22208 1.02617 0.93038 1.03589 1.22055 1.02229 1.00165 0.96400 1.22387 0.83391 0.99004 0.87539 1.40885 1.04635 1.10227 1.59382 0.70444 0.86901 0.88315 0.86813 0.82627 0.94508 0.99066 0.92429 0.87475 0.94144 0.87425 0.90974 0.95646 0.88467 0.93549 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.01 10.02 71.24 0.71 0.70 16 2 C 0.20 2.29 6.78 41.20 0.28 2.57 16 3 C -0.31 -7.77 9.57 22.34 0.21 -7.56 16 4 C 0.38 15.80 6.97 25.45 0.18 15.98 16 5 O -0.59 -33.09 17.47 -5.59 -0.10 -33.19 16 6 C -0.34 -12.50 5.01 -18.63 -0.09 -12.60 16 7 C 0.56 28.45 6.95 86.62 0.60 29.05 16 8 O -0.60 -38.63 16.57 -4.09 -0.07 -38.70 16 9 N -0.59 -27.69 2.38 -806.16 -1.92 -29.61 16 10 C 0.27 15.42 4.47 85.63 0.38 15.80 16 11 C -0.53 -33.35 7.85 25.60 0.20 -33.15 16 12 H 0.04 2.56 7.52 -2.91 -0.02 2.53 16 13 C 0.01 0.64 5.46 84.65 0.46 1.11 16 14 N -0.93 -58.74 13.29 21.45 0.28 -58.46 16 15 Si 0.96 49.21 29.54 68.60 2.03 51.23 16 16 H -0.28 -14.42 7.11 99.48 0.71 -13.72 16 17 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 19 C 0.12 3.73 2.51 44.99 0.11 3.84 16 20 C -0.16 -3.62 9.05 71.98 0.65 -2.97 16 21 C -0.15 -5.20 8.34 71.98 0.60 -4.59 16 22 C 0.21 3.85 8.62 84.25 0.73 4.58 16 23 N -0.54 -4.13 5.16 -182.38 -0.94 -5.07 16 24 H 0.45 -1.94 8.70 -92.71 -0.81 -2.75 16 25 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.10 0.09 8.06 -2.39 -0.02 0.07 16 27 H 0.11 -0.69 8.12 -2.39 -0.02 -0.71 16 28 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 29 H 0.04 2.07 6.72 -2.38 -0.02 2.06 16 30 H -0.01 -0.59 7.37 -2.39 -0.02 -0.61 16 31 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.11 2.62 4.64 -2.39 -0.01 2.61 16 33 H 0.04 1.20 6.91 -2.39 -0.02 1.19 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.35 7.29 -2.39 -0.02 1.33 16 36 H 0.02 1.00 7.95 -2.38 -0.02 0.98 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.91 6.94 -2.39 -0.02 1.89 16 39 H 0.21 2.32 6.38 -2.91 -0.02 2.30 16 Total: -1.00 -111.57 324.73 4.58 -106.99 By element: Atomic # 1 Polarization: -6.23 SS G_CDS: 0.27 Total: -5.96 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 5.03 Total: 12.77 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -2.58 Total: -93.15 kcal Atomic # 8 Polarization: -71.72 SS G_CDS: -0.17 Total: -71.88 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.23 kcal Total: -111.57 4.58 -106.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219988810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.511 kcal (2) G-P(sol) polarization free energy of solvation -111.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.54 seconds