Wall clock time and date at job start Mon Mar 30 2020 23:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.99818 * 2 1 4 4 C 1.50700 * 120.00242 * 0.02562 * 3 2 1 5 5 N 1.46901 * 109.47302 * 79.72329 * 4 3 2 6 6 C 1.46904 * 111.00124 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47069 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47043 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47211 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00031 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00224 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99930 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47090 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46861 * 120.00462 * 13 11 9 16 16 H 1.48500 * 109.47094 * 240.00255 * 13 11 9 17 17 C 1.38211 * 119.99887 * 179.72518 * 3 2 1 18 18 C 1.38254 * 119.99774 * 0.28289 * 17 3 2 19 19 C 1.38205 * 120.00424 * 359.97354 * 18 17 3 20 20 C 1.38210 * 120.00074 * 180.19376 * 2 1 3 21 21 N 1.48018 * 120.00116 * 0.04154 * 20 2 1 22 22 O 1.21795 * 120.00217 * 186.67490 * 21 20 2 23 23 O 1.21801 * 119.99847 * 6.67469 * 21 20 2 24 24 H 1.08999 * 109.47179 * 96.80663 * 1 2 3 25 25 H 1.09002 * 109.47151 * 216.80274 * 1 2 3 26 26 H 1.09001 * 109.47367 * 336.80187 * 1 2 3 27 27 H 1.09011 * 109.47028 * 319.72735 * 4 3 2 28 28 H 1.08997 * 109.47461 * 199.72675 * 4 3 2 29 29 H 1.00898 * 110.99756 * 56.04670 * 5 4 3 30 30 H 1.09006 * 109.46570 * 299.99833 * 6 5 4 31 31 H 1.08999 * 109.47313 * 59.99696 * 6 5 4 32 32 H 1.08996 * 109.47486 * 299.99974 * 7 6 5 33 33 H 1.08999 * 109.47177 * 59.99764 * 7 6 5 34 34 H 1.08996 * 109.47472 * 300.00611 * 8 7 6 35 35 H 1.09011 * 109.46773 * 60.00615 * 8 7 6 36 36 H 0.97001 * 120.00105 * 180.02562 * 12 11 9 37 37 H 1.08005 * 119.99965 * 180.25063 * 17 3 2 38 38 H 1.08006 * 119.99794 * 179.97438 * 18 17 3 39 39 H 1.08004 * 120.00476 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 1.4448 2.5025 0.0006 5 7 0.9865 2.8027 1.3636 6 6 0.2457 4.0707 1.4026 7 6 -0.2149 4.3484 2.8349 8 6 -0.9859 5.6693 2.8757 9 6 -1.4400 5.9426 4.2864 10 1 -1.2022 5.2442 5.0751 11 6 -2.1592 7.0842 4.5701 12 7 -2.4493 7.9344 3.6096 13 14 -2.7216 7.4233 6.3189 14 1 -2.2701 6.3216 7.2064 15 1 -2.1377 8.7060 6.7867 16 1 -4.2035 7.5120 6.3539 17 6 3.5804 1.1974 0.0057 18 6 4.2716 0.0001 0.0056 19 6 3.5807 -1.1969 0.0002 20 6 2.1981 -1.1969 -0.0040 21 7 1.4580 -2.4788 -0.0093 22 8 2.0607 -3.5305 0.1097 23 8 0.2463 -2.4819 -0.1327 24 1 -0.3633 -0.1218 -1.0204 25 1 -0.3633 -0.8229 0.6156 26 1 -0.3634 0.9446 0.4048 27 1 0.5837 2.4252 -0.6635 28 1 2.1007 3.3009 -0.3463 29 1 1.7605 2.8158 2.0107 30 1 0.8931 4.8802 1.0653 31 1 -0.6236 4.0040 0.7483 32 1 -0.8623 3.5389 3.1719 33 1 0.6541 4.4150 3.4895 34 1 -0.3382 6.4787 2.5388 35 1 -1.8550 5.6030 2.2210 36 1 -2.9550 8.7378 3.8093 37 1 4.1203 2.1327 0.0098 38 1 5.3517 0.0001 0.0096 39 1 4.1207 -2.1322 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231885643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:25 Heat of formation + Delta-G solvation = -11.261270 kcal Electronic energy + Delta-G solvation = -20626.781519 eV Core-core repulsion = 17343.248941 eV Total energy + Delta-G solvation = -3283.532578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.30978 -40.83226 -37.82446 -37.71709 -35.66155 -34.18734 -33.75973 -32.18849 -29.23634 -28.26601 -26.97471 -26.06015 -23.95222 -23.23022 -22.28317 -21.74752 -19.69216 -19.68129 -18.66498 -18.48967 -17.46372 -17.00867 -16.57299 -16.41717 -15.83577 -15.67702 -14.82527 -14.63628 -14.46076 -14.28268 -13.76769 -13.67139 -13.52921 -13.28067 -13.21979 -13.08501 -12.69017 -12.54594 -12.48099 -12.27173 -12.22443 -12.12667 -11.62696 -11.52468 -11.38637 -11.11629 -10.55794 -10.52170 -9.99683 -9.39674 -8.20837 -6.31257 -1.18924 -0.05182 0.31418 0.42571 1.39373 1.40284 1.53247 2.24727 2.40697 3.12667 3.17985 3.41067 3.44213 3.75693 3.88039 3.96688 4.04645 4.26272 4.33272 4.45927 4.50754 4.61271 4.66634 4.73319 4.76633 4.90703 4.98776 5.04682 5.09115 5.12376 5.21159 5.26185 5.32608 5.52655 5.60378 5.76432 5.86882 5.98419 6.27120 6.42793 6.52146 6.86344 7.38165 8.91090 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.002802 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.197597 B = 9990.536266 C =10435.381305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.093 4.093 4 C 0.097 3.903 5 N -0.689 5.689 6 C 0.074 3.926 7 C -0.094 4.094 8 C 0.025 3.975 9 C -0.542 4.542 10 H 0.057 0.943 11 C -0.001 4.001 12 N -0.933 5.933 13 Si 0.963 3.037 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.279 1.279 17 C -0.045 4.045 18 C -0.113 4.113 19 C -0.056 4.056 20 C -0.074 4.074 21 N 0.034 4.966 22 O -0.188 6.188 23 O -0.184 6.184 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.346 0.654 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.050 0.950 34 H -0.006 1.006 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.172 0.828 38 H 0.185 0.815 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.275 -15.222 -10.395 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.003 4.003 3 C -0.094 4.094 4 C -0.031 4.031 5 N -0.321 5.321 6 C -0.055 4.055 7 C -0.132 4.132 8 C -0.013 4.013 9 C -0.580 4.580 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.787 3.213 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.204 1.204 17 C -0.063 4.063 18 C -0.131 4.131 19 C -0.076 4.076 20 C -0.158 4.158 21 N 0.545 4.455 22 O -0.399 6.399 23 O -0.394 6.394 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.189 0.811 38 H 0.202 0.798 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 15.943 -14.870 -10.486 24.192 hybrid contribution -0.291 0.559 0.674 0.923 sum 15.652 -14.311 -9.812 23.368 Atomic orbital electron populations 1.21310 0.89056 1.05039 1.03788 1.19834 0.98127 0.90312 0.92056 1.19825 0.94333 0.93335 1.01879 1.20909 0.98781 0.92125 0.91263 1.60459 1.30061 1.34345 1.07192 1.21828 0.97407 0.89009 0.97212 1.21372 0.99084 0.97212 0.95495 1.18971 0.94147 0.92827 0.95315 1.21742 1.34343 1.06253 0.95691 0.92432 1.25959 0.96176 0.96052 1.01648 1.70092 1.40702 1.12353 1.34206 0.85431 0.77989 0.78292 0.79542 1.18724 1.20261 1.20448 1.21991 0.92667 1.00854 0.90826 1.21577 1.02639 0.89457 0.99423 1.21373 0.89822 1.02477 0.93891 1.21215 0.93396 0.82032 1.19148 1.43930 1.01126 1.03451 0.96990 1.94485 1.69998 1.21243 1.54169 1.94492 0.97025 1.94138 1.53770 0.89447 0.90163 0.89202 0.89699 0.91708 0.83515 0.94964 0.91707 0.93248 0.93087 0.98802 0.99015 0.92774 0.81060 0.79817 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.09 71.24 0.58 -2.47 16 2 C 0.00 -0.03 5.88 -19.87 -0.12 -0.14 16 3 C -0.09 -1.49 5.39 -19.87 -0.11 -1.60 16 4 C 0.10 1.71 4.92 85.56 0.42 2.13 16 5 N -0.69 -16.06 5.88 -517.91 -3.04 -19.10 16 6 C 0.07 2.23 5.69 86.30 0.49 2.72 16 7 C -0.09 -3.66 5.41 30.59 0.17 -3.50 16 8 C 0.03 1.29 4.97 29.85 0.15 1.44 16 9 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 10 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 11 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 12 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 13 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 C -0.04 -0.45 9.67 22.27 0.22 -0.24 16 18 C -0.11 -0.97 10.05 22.27 0.22 -0.75 16 19 C -0.06 -0.81 9.56 22.27 0.21 -0.60 16 20 C -0.07 -1.58 6.83 36.37 0.25 -1.33 16 21 N 0.03 0.91 4.45 -46.47 -0.21 0.70 16 22 O -0.19 -5.12 18.47 18.89 0.35 -4.77 16 23 O -0.18 -5.30 15.37 18.89 0.29 -5.01 16 24 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.08 2.04 5.89 -2.39 -0.01 2.03 16 26 H 0.09 2.11 6.04 -2.39 -0.01 2.09 16 27 H 0.08 1.57 7.18 -2.38 -0.02 1.55 16 28 H 0.06 0.92 8.00 -2.39 -0.02 0.90 16 29 H 0.35 7.40 8.72 -89.70 -0.78 6.61 16 30 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.17 0.72 8.04 -2.91 -0.02 0.70 16 38 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.16 1.88 7.63 -2.91 -0.02 1.85 16 Total: -1.00 -69.04 331.93 3.15 -65.89 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.28 Total: 6.68 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.17 Total: -34.44 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -2.97 Total: -74.53 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.64 Total: -9.79 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -69.04 3.15 -65.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231885643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.631 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds