Wall clock time and date at job start Tue Mar 31 2020 01:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35441 * 126.77546 * 2 1 4 4 C 1.41382 * 103.98388 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.80408 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47429 * 124.99550 * 5 4 3 7 7 O 1.21285 * 119.99847 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00168 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63030 * 359.97438 * 8 6 5 10 10 C 1.53200 * 108.77279 * 126.37310 * 9 8 6 11 11 C 1.53039 * 109.31160 * 54.63574 * 10 9 8 12 12 C 1.53046 * 109.52798 * 298.64112 * 11 10 9 13 13 H 1.08994 * 109.49581 * 301.40708 * 12 11 10 14 14 C 1.50700 * 109.49577 * 181.31010 * 12 11 10 15 15 H 1.07999 * 120.00091 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99871 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99744 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00059 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47288 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47048 * 119.99820 * 18 16 14 21 21 H 1.48497 * 109.47251 * 239.99966 * 18 16 14 22 22 C 1.46928 * 120.63178 * 179.97438 * 8 6 5 23 23 N 1.30176 * 106.39445 * 0.25514 * 4 3 2 24 24 O 1.20919 * 111.60353 * 359.54160 * 23 4 3 25 25 H 1.09001 * 109.46968 * 90.00013 * 1 2 3 26 26 H 1.09003 * 109.47430 * 210.00205 * 1 2 3 27 27 H 1.09001 * 109.47086 * 330.00432 * 1 2 3 28 28 H 1.08001 * 128.01073 * 0.05220 * 3 2 1 29 29 H 1.09002 * 109.47075 * 4.99923 * 5 4 3 30 30 H 1.08996 * 109.47487 * 245.00095 * 5 4 3 31 31 H 1.08998 * 109.58425 * 6.59260 * 9 8 6 32 32 H 1.08995 * 109.70793 * 246.22878 * 9 8 6 33 33 H 1.08997 * 109.49280 * 294.68615 * 10 9 8 34 34 H 1.08996 * 109.52417 * 174.60413 * 10 9 8 35 35 H 1.09002 * 109.46050 * 58.65698 * 11 10 9 36 36 H 1.09004 * 109.46034 * 178.62914 * 11 10 9 37 37 H 0.97002 * 119.99462 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58766 * 353.41859 * 22 8 6 39 39 H 1.08998 * 109.58326 * 113.83934 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0006 5 6 4.9210 1.2999 -0.0003 6 6 5.7670 0.8506 1.1631 7 8 5.3548 -0.0045 1.9181 8 7 6.9811 1.3996 1.3653 9 6 7.4938 2.4368 0.4597 10 6 7.9042 3.6572 1.2899 11 6 8.8944 3.2229 2.3729 12 6 8.2235 2.2092 3.3027 13 1 7.3375 2.6582 3.7516 14 6 9.1886 1.8063 4.3877 15 1 10.1814 2.2308 4.4123 16 6 8.8042 0.8956 5.3490 17 7 7.5951 0.3791 5.3193 18 14 10.0002 0.3967 6.6943 19 1 11.2858 1.1158 6.5055 20 1 9.4278 0.7447 8.0196 21 1 10.2383 -1.0675 6.6269 22 6 7.8171 0.9723 2.4955 23 7 3.4763 -0.7565 -0.0065 24 8 2.3094 -1.0737 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 2.0344 2.1270 0.0008 29 1 4.7163 2.3667 0.0900 30 1 5.4541 1.1099 -0.9319 31 1 6.7152 2.7214 -0.2480 32 1 8.3592 2.0561 -0.0827 33 1 7.0212 4.0925 1.7577 34 1 8.3747 4.3969 0.6422 35 1 9.7662 2.7652 1.9053 36 1 9.2067 4.0935 2.9496 37 1 7.3248 -0.2618 5.9954 38 1 7.2519 0.2906 3.1309 39 1 8.7094 0.4708 2.1208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:10 Heat of formation + Delta-G solvation = 15.432993 kcal Electronic energy + Delta-G solvation = -21800.237429 eV Core-core repulsion = 18517.862402 eV Total energy + Delta-G solvation = -3282.375028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -44.76777 -39.41487 -36.75933 -34.46731 -33.42703 -33.26868 -31.77622 -30.06825 -28.94877 -27.78219 -25.05537 -24.43152 -22.95328 -21.83286 -20.79346 -19.39429 -18.07371 -17.53783 -17.13080 -16.60304 -15.98154 -15.24138 -14.89818 -14.57568 -14.20326 -13.75583 -13.68734 -13.45862 -13.33879 -12.91347 -12.67810 -12.59402 -12.50474 -12.26368 -11.94133 -11.74475 -11.00533 -10.93512 -10.90238 -10.48959 -10.38406 -10.23305 -10.00405 -9.88370 -9.24342 -9.20377 -9.10616 -8.82689 -8.42313 -7.71747 -5.98338 -4.07485 1.61182 2.35700 3.21822 3.27421 3.31296 3.39377 3.42255 3.74581 4.26989 4.43820 4.50847 5.00069 5.03377 5.17132 5.20935 5.24179 5.29178 5.32209 5.43632 5.48021 5.54434 5.66207 5.66982 5.88434 5.97778 6.11170 6.17403 6.30807 6.59792 6.68011 6.85974 6.97787 7.16724 7.31277 7.65881 7.88525 8.01279 8.27274 8.40276 8.49029 8.90131 8.98032 9.58387 11.06896 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.004445 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.957686 B = 6297.002889 C = 7205.612060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.045 4.045 3 C -0.229 4.229 4 C 0.033 3.967 5 C -0.064 4.064 6 C 0.506 3.494 7 O -0.523 6.523 8 N -0.607 5.607 9 C 0.108 3.892 10 C -0.134 4.134 11 C -0.111 4.111 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.114 3.886 23 N -0.335 5.335 24 O 0.103 5.897 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.169 0.831 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.263 0.737 38 H 0.122 0.878 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 4.871 -14.103 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.250 4.250 4 C -0.126 4.126 5 C -0.105 4.105 6 C 0.291 3.709 7 O -0.399 6.399 8 N -0.341 5.341 9 C -0.016 4.016 10 C -0.172 4.172 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.007 4.007 23 N -0.036 5.036 24 O 0.033 5.967 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.187 0.813 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.149 3.238 -13.593 17.270 hybrid contribution 0.396 0.655 0.765 1.082 sum -9.753 3.893 -12.828 16.578 Atomic orbital electron populations 1.20280 0.84314 1.04539 1.03687 1.24432 0.96310 0.86484 1.03584 1.22328 0.91237 1.00837 1.10614 1.22850 0.96103 0.90077 1.03593 1.20090 0.90523 0.99998 0.99848 1.20102 0.81963 0.82760 0.86033 1.90758 1.71057 1.31456 1.46620 1.48478 1.17095 1.38658 1.29853 1.21653 0.98791 0.89040 0.92129 1.21949 1.00460 0.96347 0.98452 1.21626 0.97202 0.99791 0.96223 1.18971 0.96016 0.90831 0.92098 0.95382 1.21116 0.99484 1.25423 1.09992 0.92311 1.25066 0.95146 0.96095 0.97761 1.69905 1.17587 1.29470 1.34764 0.86539 0.81233 0.78382 0.81882 1.19769 1.21003 1.20964 1.22275 0.92740 1.00669 0.84968 1.73889 0.96085 1.16305 1.17342 1.84856 1.11444 1.33165 1.67226 0.89712 0.89940 0.89281 0.81342 0.87210 0.87650 0.91222 0.91953 0.92149 0.92184 0.93173 0.93017 0.92703 0.86022 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.01 0.38 -0.11 16 2 C -0.04 -0.54 7.49 -35.31 -0.26 -0.80 16 3 C -0.23 -2.90 11.05 -39.38 -0.44 -3.34 16 4 C 0.03 0.54 6.10 -82.10 -0.50 0.04 16 5 C -0.06 -0.95 4.64 -29.03 -0.13 -1.08 16 6 C 0.51 10.51 7.69 -10.99 -0.08 10.42 16 7 O -0.52 -13.62 15.02 5.55 0.08 -13.53 16 8 N -0.61 -12.32 2.97 -172.76 -0.51 -12.84 16 9 C 0.11 1.63 6.34 -3.70 -0.02 1.60 16 10 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 11 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.52 -14.31 8.56 -34.44 -0.29 -14.60 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -26.28 11.40 55.43 0.63 -25.65 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.11 2.82 5.40 -3.71 -0.02 2.80 16 23 N -0.34 -6.18 11.48 33.42 0.38 -5.80 16 24 O 0.10 1.62 11.20 17.18 0.19 1.81 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.11 1.28 7.69 -51.93 -0.40 0.88 16 30 H 0.11 1.30 7.94 -51.93 -0.41 0.89 16 31 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.12 3.57 5.13 -51.93 -0.27 3.30 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -35.13 321.61 -6.95 -42.09 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.58 Total: -0.28 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.98 Total: -7.21 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.50 Total: -44.28 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.28 Total: -11.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.13 -6.95 -42.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.520 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds