Wall clock time and date at job start Tue Mar 31 2020 01:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35441 * 126.77546 * 2 1 4 4 C 1.41382 * 103.98388 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.80408 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47429 * 124.99550 * 5 4 3 7 7 O 1.21285 * 119.99847 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00168 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63030 * 359.97438 * 8 6 5 10 10 C 1.53200 * 108.77279 * 126.37310 * 9 8 6 11 11 C 1.53039 * 109.31160 * 54.63574 * 10 9 8 12 12 C 1.53046 * 109.52798 * 298.64112 * 11 10 9 13 13 H 1.08994 * 109.49581 * 301.40708 * 12 11 10 14 14 C 1.50700 * 109.49577 * 181.31010 * 12 11 10 15 15 H 1.07999 * 120.00091 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99871 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99744 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00059 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47288 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47048 * 119.99820 * 18 16 14 21 21 H 1.48497 * 109.47251 * 239.99966 * 18 16 14 22 22 C 1.46928 * 120.63178 * 179.97438 * 8 6 5 23 23 N 1.30176 * 106.39445 * 0.25514 * 4 3 2 24 24 O 1.20919 * 111.60353 * 359.54160 * 23 4 3 25 25 H 1.09001 * 109.46968 * 90.00013 * 1 2 3 26 26 H 1.09003 * 109.47430 * 210.00205 * 1 2 3 27 27 H 1.09001 * 109.47086 * 330.00432 * 1 2 3 28 28 H 1.08001 * 128.01073 * 0.05220 * 3 2 1 29 29 H 1.09002 * 109.47075 * 4.99923 * 5 4 3 30 30 H 1.08996 * 109.47487 * 245.00095 * 5 4 3 31 31 H 1.08998 * 109.58425 * 6.59260 * 9 8 6 32 32 H 1.08995 * 109.70793 * 246.22878 * 9 8 6 33 33 H 1.08997 * 109.49280 * 294.68615 * 10 9 8 34 34 H 1.08996 * 109.52417 * 174.60413 * 10 9 8 35 35 H 1.09002 * 109.46050 * 58.65698 * 11 10 9 36 36 H 1.09004 * 109.46034 * 178.62914 * 11 10 9 37 37 H 0.97002 * 119.99462 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58766 * 353.41859 * 22 8 6 39 39 H 1.08998 * 109.58326 * 113.83934 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0006 5 6 4.9210 1.2999 -0.0003 6 6 5.7670 0.8506 1.1631 7 8 5.3548 -0.0045 1.9181 8 7 6.9811 1.3996 1.3653 9 6 7.4938 2.4368 0.4597 10 6 7.9042 3.6572 1.2899 11 6 8.8944 3.2229 2.3729 12 6 8.2235 2.2092 3.3027 13 1 7.3375 2.6582 3.7516 14 6 9.1886 1.8063 4.3877 15 1 10.1814 2.2308 4.4123 16 6 8.8042 0.8956 5.3490 17 7 7.5951 0.3791 5.3193 18 14 10.0002 0.3967 6.6943 19 1 11.2858 1.1158 6.5055 20 1 9.4278 0.7447 8.0196 21 1 10.2383 -1.0675 6.6269 22 6 7.8171 0.9723 2.4955 23 7 3.4763 -0.7565 -0.0065 24 8 2.3094 -1.0737 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 2.0344 2.1270 0.0008 29 1 4.7163 2.3667 0.0900 30 1 5.4541 1.1099 -0.9319 31 1 6.7152 2.7214 -0.2480 32 1 8.3592 2.0561 -0.0827 33 1 7.0212 4.0925 1.7577 34 1 8.3747 4.3969 0.6422 35 1 9.7662 2.7652 1.9053 36 1 9.2067 4.0935 2.9496 37 1 7.3248 -0.2618 5.9954 38 1 7.2519 0.2906 3.1309 39 1 8.7094 0.4708 2.1208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:08 Heat of formation + Delta-G solvation = -8.476618 kcal Electronic energy + Delta-G solvation = -21801.274228 eV Core-core repulsion = 18517.862402 eV Total energy + Delta-G solvation = -3283.411826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.87489 -41.01456 -38.41231 -35.65229 -35.28630 -34.22826 -33.48600 -31.72548 -30.34137 -28.56275 -27.02068 -26.01547 -24.06155 -23.44339 -22.15957 -20.89105 -19.54229 -18.79835 -18.42219 -18.21928 -17.66229 -16.76842 -16.51797 -16.31993 -15.39029 -15.20084 -14.89801 -14.67348 -14.47661 -14.28711 -13.93563 -13.88970 -13.81819 -13.52605 -13.26054 -13.10285 -12.94250 -12.66146 -12.30712 -12.22766 -11.99105 -11.78889 -11.63674 -11.18521 -11.09945 -10.95001 -10.60336 -10.50354 -10.18367 -9.40985 -8.14210 -6.31696 0.63037 1.26206 1.36624 1.38064 1.50320 1.72725 2.23398 2.36329 2.40639 3.14388 3.18228 3.52625 3.79239 4.09614 4.15760 4.19086 4.22190 4.34056 4.37042 4.52204 4.60349 4.67080 4.77172 4.77793 4.81881 4.88217 4.94979 5.06652 5.11234 5.26142 5.29739 5.31412 5.36826 5.53011 5.64611 5.88267 5.98369 6.30858 6.66684 6.82590 7.33574 7.39678 7.43891 8.89119 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.004445 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.957686 B = 6297.002889 C = 7205.612060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.233 4.233 4 C 0.011 3.989 5 C -0.050 4.050 6 C 0.494 3.506 7 O -0.591 6.591 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.126 4.126 11 C -0.107 4.107 12 C 0.039 3.961 13 H -0.014 1.014 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.007 3.993 17 N -0.918 5.918 18 Si 0.958 3.042 19 H -0.258 1.258 20 H -0.281 1.281 21 H -0.285 1.285 22 C 0.126 3.874 23 N -0.390 5.390 24 O 0.082 5.918 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.206 0.794 29 H 0.152 0.848 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 7.404 -16.366 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C -0.254 4.254 4 C -0.148 4.148 5 C -0.090 4.090 6 C 0.282 3.718 7 O -0.471 6.471 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.144 4.144 12 C 0.020 3.980 13 H 0.005 0.995 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.557 5.557 18 Si 0.783 3.217 19 H -0.181 1.181 20 H -0.207 1.207 21 H -0.211 1.211 22 C 0.003 3.997 23 N -0.094 5.094 24 O 0.015 5.985 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.129 0.871 28 H 0.223 0.777 29 H 0.170 0.830 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.446 5.817 -15.900 19.894 hybrid contribution 0.445 -0.118 1.464 1.535 sum -10.001 5.699 -14.436 18.463 Atomic orbital electron populations 1.20559 0.80582 1.05809 1.05670 1.25432 0.98269 0.85425 1.01330 1.22783 0.89573 1.02657 1.10371 1.23359 0.97959 0.89972 1.03506 1.20171 0.89155 1.01841 0.97838 1.21221 0.82084 0.81610 0.86848 1.90727 1.72512 1.34465 1.49415 1.48520 1.16764 1.39691 1.29248 1.22106 1.01086 0.87190 0.91795 1.21921 0.99309 0.97460 0.97701 1.21526 0.98116 0.98141 0.96644 1.18899 0.94313 0.92049 0.92744 0.99541 1.21597 1.00043 1.24969 1.10777 0.91881 1.25937 0.96650 0.96269 1.00345 1.70121 1.19782 1.30259 1.35518 0.85500 0.79514 0.77823 0.78819 1.18133 1.20718 1.21073 1.21643 0.92134 0.99702 0.86204 1.73881 0.97561 1.18121 1.19866 1.84782 1.11300 1.34724 1.67665 0.87171 0.89476 0.87138 0.77718 0.83016 0.84535 0.86237 0.90297 0.92658 0.87443 0.92643 0.92944 0.93305 0.91177 0.95023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.45 71.24 0.74 -0.02 16 2 C -0.04 -0.94 7.49 25.04 0.19 -0.75 16 3 C -0.23 -5.39 11.05 22.40 0.25 -5.14 16 4 C 0.01 0.34 6.10 43.58 0.27 0.61 16 5 C -0.05 -1.37 4.64 29.10 0.14 -1.24 16 6 C 0.49 20.67 7.69 87.66 0.67 21.35 16 7 O -0.59 -32.57 15.02 -3.04 -0.05 -32.61 16 8 N -0.61 -24.60 2.97 -818.89 -2.43 -27.04 16 9 C 0.10 2.64 6.34 86.36 0.55 3.19 16 10 C -0.13 -3.47 6.08 30.67 0.19 -3.29 16 11 C -0.11 -4.07 5.11 30.62 0.16 -3.92 16 12 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 13 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 14 C -0.54 -30.17 8.56 25.60 0.22 -29.95 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 16 C 0.01 0.41 5.30 84.66 0.45 0.85 16 17 N -0.92 -58.00 11.40 21.45 0.24 -57.76 16 18 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 C 0.13 6.51 5.40 86.36 0.47 6.98 16 23 N -0.39 -14.76 11.48 -49.56 -0.57 -15.33 16 24 O 0.08 2.65 11.20 71.65 0.80 3.45 16 25 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.15 2.80 7.69 -2.39 -0.02 2.79 16 30 H 0.14 2.85 7.94 -2.39 -0.02 2.83 16 31 H 0.12 2.03 5.93 -2.39 -0.01 2.01 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.07 4.41 5.13 -2.39 -0.01 4.40 16 39 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -86.45 321.61 5.33 -81.12 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.05 Total: 9.97 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.25 Total: -9.34 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -2.76 Total: -100.12 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: 0.76 Total: -29.16 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -86.45 5.33 -81.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.645 kcal (2) G-P(sol) polarization free energy of solvation -86.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds