Wall clock time and date at job start Tue Mar 31 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30018 * 127.33413 * 2 1 4 4 O 1.20654 * 112.29657 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.16148 * 359.71818 * 4 3 2 6 6 C 1.50699 * 126.82877 * 180.33199 * 5 4 3 7 7 C 1.37363 * 106.33918 * 0.45124 * 5 4 3 8 8 C 1.47391 * 128.56263 * 179.85190 * 7 5 4 9 9 O 1.21605 * 120.00454 * 269.95303 * 8 7 5 10 10 N 1.34784 * 119.99684 * 89.68228 * 8 7 5 11 11 C 1.46918 * 120.63039 * 359.71623 * 10 8 7 12 12 C 1.53629 * 108.54410 * 126.36956 * 11 10 8 13 13 C 1.53042 * 109.24095 * 54.85227 * 12 11 10 14 14 C 1.53042 * 109.54144 * 298.51747 * 13 12 11 15 15 H 1.08998 * 109.49049 * 301.40836 * 14 13 12 16 16 C 1.50701 * 109.49754 * 181.31627 * 14 13 12 17 17 H 1.08001 * 119.99846 * 0.15689 * 16 14 13 18 18 C 1.37879 * 119.99757 * 180.16272 * 16 14 13 19 19 N 1.31507 * 119.99983 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99641 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47229 * 59.99808 * 20 18 16 22 22 H 1.48501 * 109.47072 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47423 * 299.99591 * 20 18 16 24 24 C 1.46931 * 120.62757 * 179.97438 * 10 8 7 25 25 H 1.09004 * 109.46865 * 270.03868 * 1 2 3 26 26 H 1.09005 * 109.47553 * 30.03389 * 1 2 3 27 27 H 1.09003 * 109.47581 * 150.04005 * 1 2 3 28 28 H 1.09000 * 109.47316 * 270.14158 * 6 5 4 29 29 H 1.08999 * 109.47012 * 30.14848 * 6 5 4 30 30 H 1.09008 * 109.46752 * 150.14241 * 6 5 4 31 31 H 1.08995 * 109.59003 * 246.20126 * 11 10 8 32 32 H 1.08997 * 109.58851 * 6.63324 * 11 10 8 33 33 H 1.09001 * 109.63104 * 294.86584 * 12 11 10 34 34 H 1.08998 * 109.46269 * 174.74377 * 12 11 10 35 35 H 1.08993 * 109.46046 * 178.48869 * 13 12 11 36 36 H 1.09006 * 109.45415 * 58.53401 * 13 12 11 37 37 H 0.96998 * 120.00242 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.58636 * 353.37407 * 24 10 8 39 39 H 1.09001 * 109.58241 * 113.65444 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 4.9712 -1.3246 0.0164 7 6 2.3991 -1.1697 0.0006 8 6 2.0401 -2.5992 0.0007 9 8 1.8972 -3.1904 -1.0523 10 7 1.8754 -3.2525 1.1681 11 6 2.0565 -2.5549 2.4483 12 6 0.7948 -2.7617 3.3002 13 6 0.5177 -4.2607 3.4353 14 6 0.2673 -4.8619 2.0503 15 1 -0.5774 -4.3569 1.5819 16 6 -0.0373 -6.3314 2.1874 17 1 -0.0536 -6.7906 3.1648 18 6 -0.2951 -7.0896 1.0650 19 7 -0.2756 -6.5303 -0.1250 20 14 -0.6720 -8.9112 1.2350 21 1 -1.8837 -9.0898 2.0747 22 1 -0.9116 -9.4947 -0.1095 23 1 0.4792 -9.5974 1.8747 24 6 1.5170 -4.6773 1.1844 25 1 -0.3633 0.0007 1.0277 26 1 -0.3634 0.8897 -0.5144 27 1 -0.3634 -0.8903 -0.5132 28 1 5.2960 -1.5012 -1.0090 29 1 5.7141 -0.7174 0.5335 30 1 4.8592 -2.2787 0.5315 31 1 2.9227 -2.9640 2.9682 32 1 2.2058 -1.4906 2.2666 33 1 -0.0549 -2.2765 2.8199 34 1 0.9493 -2.3296 4.2889 35 1 -0.3615 -4.4124 4.0614 36 1 1.3779 -4.7492 3.8930 37 1 -0.4573 -7.0636 -0.9146 38 1 1.3104 -5.0138 0.1685 39 1 2.3412 -5.2566 1.6007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:08 Heat of formation + Delta-G solvation = 12.299095 kcal Electronic energy + Delta-G solvation = -22545.934443 eV Core-core repulsion = 19263.423519 eV Total energy + Delta-G solvation = -3282.510924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.76608 -39.39009 -36.73265 -34.47704 -33.65082 -33.16885 -31.76690 -29.85641 -28.69477 -28.02530 -25.47341 -25.03142 -23.16542 -21.87944 -20.47819 -19.63761 -18.57890 -17.74813 -17.21689 -16.40615 -15.91914 -15.33240 -14.67784 -14.52528 -13.87984 -13.72759 -13.59577 -13.46038 -13.15115 -13.02755 -12.82708 -12.69155 -12.60066 -12.39231 -12.09989 -11.91897 -11.05656 -11.00834 -10.95239 -10.57169 -10.47775 -10.28495 -9.95410 -9.84224 -9.59115 -9.24332 -9.08861 -8.99792 -8.47407 -7.84873 -6.03590 -4.12633 1.40782 2.02794 2.85344 3.02173 3.29608 3.36057 3.37011 3.66853 4.21379 4.34714 4.40000 4.89694 5.01233 5.25105 5.26315 5.30049 5.30793 5.40946 5.49471 5.54546 5.61390 5.65377 5.71782 5.86524 5.94918 6.12874 6.13770 6.25956 6.54978 6.60331 6.79458 6.91692 7.07518 7.18273 7.58011 7.81069 7.93794 8.14082 8.29915 8.33347 8.71916 8.91394 9.53324 11.01745 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.005118 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.936747 B = 5469.386431 C = 5656.422903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.362 5.362 4 O 0.091 5.909 5 C 0.001 3.999 6 C -0.074 4.074 7 C -0.230 4.230 8 C 0.585 3.415 9 O -0.523 6.523 10 N -0.593 5.593 11 C 0.111 3.889 12 C -0.132 4.132 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.265 0.735 38 H 0.124 0.876 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 11.512 3.641 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 N -0.069 5.069 4 O 0.029 5.971 5 C -0.062 4.062 6 C -0.132 4.132 7 C -0.237 4.237 8 C 0.369 3.631 9 O -0.399 6.399 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.171 4.171 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.048 0.952 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.007 4.007 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.106 12.431 2.876 14.605 hybrid contribution -0.332 -1.699 0.110 1.735 sum 6.774 10.732 2.986 13.037 Atomic orbital electron populations 1.20233 0.85221 1.04299 1.03807 1.24766 0.98609 0.86637 1.00818 1.73567 0.89201 1.23439 1.20725 1.84477 1.21484 1.22697 1.68410 1.24544 0.97470 0.83615 1.00557 1.20407 0.88924 0.99208 1.04637 1.22216 0.92581 0.96154 1.12798 1.16952 0.78158 0.83444 0.84496 1.90840 1.50689 1.67496 1.30887 1.48485 1.66805 1.13092 1.04113 1.21702 0.98276 0.96205 0.85111 1.22013 0.97270 0.99338 0.98437 1.21635 1.00378 0.92400 1.00424 1.18956 0.93368 0.95901 0.89601 0.95244 1.21029 1.48698 0.93277 0.93042 0.92359 1.25049 0.94950 0.98572 0.95394 1.69860 1.48122 1.36025 0.97808 0.86645 0.78862 0.85237 0.77192 1.20273 1.21244 1.20227 1.22376 0.97106 0.74640 1.06621 0.89689 0.90206 0.89378 0.88876 0.89416 0.88858 0.91828 0.91575 0.92123 0.92213 0.92905 0.93112 0.92522 0.85813 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.49 36.01 0.38 -0.67 16 2 C 0.05 0.84 7.55 -79.76 -0.60 0.23 16 3 N -0.36 -5.54 12.01 34.78 0.42 -5.13 16 4 O 0.09 1.28 11.06 18.64 0.21 1.49 16 5 C 0.00 0.02 7.55 -34.63 -0.26 -0.24 16 6 C -0.07 -0.73 10.33 36.01 0.37 -0.36 16 7 C -0.23 -3.82 4.19 -102.90 -0.43 -4.25 16 8 C 0.58 11.78 7.49 -12.53 -0.09 11.69 16 9 O -0.52 -12.82 16.52 5.27 0.09 -12.73 16 10 N -0.59 -11.56 2.97 -173.81 -0.52 -12.08 16 11 C 0.11 1.72 6.37 -3.49 -0.02 1.70 16 12 C -0.13 -2.08 6.10 -26.38 -0.16 -2.25 16 13 C -0.11 -2.12 5.10 -26.69 -0.14 -2.25 16 14 C 0.04 0.97 2.25 -91.67 -0.21 0.77 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -13.73 8.56 -34.44 -0.29 -14.03 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.88 -25.12 11.39 55.43 0.63 -24.49 16 20 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.11 2.62 5.39 -3.73 -0.02 2.60 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.96 8.11 -51.92 -0.42 0.54 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.94 6.31 -51.93 -0.33 0.61 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.12 3.40 5.12 -51.93 -0.27 3.13 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -31.08 324.77 -6.50 -37.58 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.63 Total: 0.12 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.57 Total: -5.45 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.53 Total: -41.69 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.29 Total: -11.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.08 -6.50 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.877 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds