Wall clock time and date at job start Tue Mar 31 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30018 * 127.33413 * 2 1 4 4 O 1.20654 * 112.29657 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.16148 * 359.71818 * 4 3 2 6 6 C 1.50699 * 126.82877 * 180.33199 * 5 4 3 7 7 C 1.37363 * 106.33918 * 0.45124 * 5 4 3 8 8 C 1.47391 * 128.56263 * 179.85190 * 7 5 4 9 9 O 1.21605 * 120.00454 * 269.95303 * 8 7 5 10 10 N 1.34784 * 119.99684 * 89.68228 * 8 7 5 11 11 C 1.46918 * 120.63039 * 359.71623 * 10 8 7 12 12 C 1.53629 * 108.54410 * 126.36956 * 11 10 8 13 13 C 1.53042 * 109.24095 * 54.85227 * 12 11 10 14 14 C 1.53042 * 109.54144 * 298.51747 * 13 12 11 15 15 H 1.08998 * 109.49049 * 301.40836 * 14 13 12 16 16 C 1.50701 * 109.49754 * 181.31627 * 14 13 12 17 17 H 1.08001 * 119.99846 * 0.15689 * 16 14 13 18 18 C 1.37879 * 119.99757 * 180.16272 * 16 14 13 19 19 N 1.31507 * 119.99983 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99641 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47229 * 59.99808 * 20 18 16 22 22 H 1.48501 * 109.47072 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47423 * 299.99591 * 20 18 16 24 24 C 1.46931 * 120.62757 * 179.97438 * 10 8 7 25 25 H 1.09004 * 109.46865 * 270.03868 * 1 2 3 26 26 H 1.09005 * 109.47553 * 30.03389 * 1 2 3 27 27 H 1.09003 * 109.47581 * 150.04005 * 1 2 3 28 28 H 1.09000 * 109.47316 * 270.14158 * 6 5 4 29 29 H 1.08999 * 109.47012 * 30.14848 * 6 5 4 30 30 H 1.09008 * 109.46752 * 150.14241 * 6 5 4 31 31 H 1.08995 * 109.59003 * 246.20126 * 11 10 8 32 32 H 1.08997 * 109.58851 * 6.63324 * 11 10 8 33 33 H 1.09001 * 109.63104 * 294.86584 * 12 11 10 34 34 H 1.08998 * 109.46269 * 174.74377 * 12 11 10 35 35 H 1.08993 * 109.46046 * 178.48869 * 13 12 11 36 36 H 1.09006 * 109.45415 * 58.53401 * 13 12 11 37 37 H 0.96998 * 120.00242 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.58636 * 353.37407 * 24 10 8 39 39 H 1.09001 * 109.58241 * 113.65444 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 4.9712 -1.3246 0.0164 7 6 2.3991 -1.1697 0.0006 8 6 2.0401 -2.5992 0.0007 9 8 1.8972 -3.1904 -1.0523 10 7 1.8754 -3.2525 1.1681 11 6 2.0565 -2.5549 2.4483 12 6 0.7948 -2.7617 3.3002 13 6 0.5177 -4.2607 3.4353 14 6 0.2673 -4.8619 2.0503 15 1 -0.5774 -4.3569 1.5819 16 6 -0.0373 -6.3314 2.1874 17 1 -0.0536 -6.7906 3.1648 18 6 -0.2951 -7.0896 1.0650 19 7 -0.2756 -6.5303 -0.1250 20 14 -0.6720 -8.9112 1.2350 21 1 -1.8837 -9.0898 2.0747 22 1 -0.9116 -9.4947 -0.1095 23 1 0.4792 -9.5974 1.8747 24 6 1.5170 -4.6773 1.1844 25 1 -0.3633 0.0007 1.0277 26 1 -0.3634 0.8897 -0.5144 27 1 -0.3634 -0.8903 -0.5132 28 1 5.2960 -1.5012 -1.0090 29 1 5.7141 -0.7174 0.5335 30 1 4.8592 -2.2787 0.5315 31 1 2.9227 -2.9640 2.9682 32 1 2.2058 -1.4906 2.2666 33 1 -0.0549 -2.2765 2.8199 34 1 0.9493 -2.3296 4.2889 35 1 -0.3615 -4.4124 4.0614 36 1 1.3779 -4.7492 3.8930 37 1 -0.4573 -7.0636 -0.9146 38 1 1.3104 -5.0138 0.1685 39 1 2.3412 -5.2566 1.6007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:07 Heat of formation + Delta-G solvation = -6.521114 kcal Electronic energy + Delta-G solvation = -22546.750549 eV Core-core repulsion = 19263.423519 eV Total energy + Delta-G solvation = -3283.327029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.94247 -40.98367 -38.38172 -35.76187 -35.20663 -34.53542 -33.39319 -31.57568 -29.81895 -29.07495 -27.20977 -26.63161 -24.58656 -23.47611 -21.85046 -20.99753 -20.06817 -18.97634 -18.69190 -18.14058 -17.46601 -16.83916 -16.48576 -16.05608 -15.24522 -15.19047 -14.93433 -14.53583 -14.43460 -14.39562 -14.19018 -14.01212 -13.79788 -13.59095 -13.51203 -13.39945 -12.84774 -12.74895 -12.30285 -12.26511 -12.13763 -11.89562 -11.65332 -11.34343 -10.98008 -10.95927 -10.81665 -10.51739 -10.34465 -9.50742 -8.10079 -6.26907 0.27585 0.81053 1.37094 1.43305 1.44310 1.52351 1.80048 2.23728 2.43812 3.02425 3.18675 3.24356 3.62535 3.91035 4.00159 4.13843 4.21450 4.31149 4.44964 4.51076 4.56521 4.57237 4.61358 4.71461 4.75932 4.77087 4.83498 5.02319 5.06507 5.08589 5.22803 5.25522 5.34837 5.51707 5.61049 5.89471 5.98882 6.32735 6.52295 6.85328 7.14771 7.15447 7.43526 8.93224 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.005118 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.936747 B = 5469.386431 C = 5656.422903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 N -0.368 5.368 4 O 0.100 5.900 5 C 0.032 3.968 6 C -0.078 4.078 7 C -0.267 4.267 8 C 0.589 3.411 9 O -0.581 6.581 10 N -0.592 5.592 11 C 0.109 3.891 12 C -0.125 4.125 13 C -0.104 4.104 14 C 0.039 3.961 15 H -0.012 1.012 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 0.956 3.044 21 H -0.269 1.269 22 H -0.291 1.291 23 H -0.266 1.266 24 C 0.126 3.874 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.079 0.921 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 12.742 5.769 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 N -0.076 5.076 4 O 0.039 5.961 5 C -0.032 4.032 6 C -0.134 4.134 7 C -0.274 4.274 8 C 0.375 3.625 9 O -0.461 6.461 10 N -0.322 5.322 11 C -0.013 4.013 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.020 3.980 15 H 0.006 0.994 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.188 4.188 19 N -0.554 5.554 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.191 1.191 24 C 0.004 3.996 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.637 13.693 5.063 16.963 hybrid contribution -0.773 -2.046 -0.544 2.254 sum 7.864 11.647 4.519 14.762 Atomic orbital electron populations 1.20283 0.84333 1.04099 1.04805 1.24998 0.99383 0.86274 1.00590 1.73562 0.89491 1.23238 1.21303 1.84482 1.21019 1.22661 1.67916 1.25117 0.97876 0.83214 0.96959 1.20678 0.87728 0.99178 1.05853 1.21839 0.94442 0.94241 1.16916 1.17327 0.76838 0.84681 0.83616 1.90802 1.53195 1.69190 1.32909 1.48454 1.66054 1.11866 1.05858 1.21997 0.99143 0.97116 0.83062 1.21978 0.96987 0.96720 1.00659 1.21515 1.00866 0.94755 0.97045 1.18896 0.92012 0.94790 0.92349 0.99411 1.21470 1.47969 0.94758 0.93109 0.91857 1.25863 0.94975 1.02882 0.95063 1.70063 1.49484 1.37416 0.98442 0.85639 0.79089 0.80175 0.76947 1.19456 1.21646 1.19098 1.21815 0.96853 0.77104 1.03793 0.88082 0.88238 0.91665 0.87742 0.85582 0.89257 0.89350 0.89551 0.93056 0.87957 0.92799 0.92088 0.93120 0.90319 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 10.49 71.24 0.75 -1.30 16 2 C 0.05 1.49 7.55 45.16 0.34 1.83 16 3 N -0.37 -10.52 12.01 -44.79 -0.54 -11.06 16 4 O 0.10 2.54 11.06 76.96 0.85 3.39 16 5 C 0.03 0.80 7.55 25.48 0.19 0.99 16 6 C -0.08 -1.28 10.33 71.24 0.74 -0.54 16 7 C -0.27 -8.66 4.19 -18.75 -0.08 -8.74 16 8 C 0.59 24.26 7.49 86.65 0.65 24.90 16 9 O -0.58 -30.10 16.52 -4.05 -0.07 -30.17 16 10 N -0.59 -23.20 2.97 -822.07 -2.44 -25.63 16 11 C 0.11 3.11 6.37 86.51 0.55 3.66 16 12 C -0.13 -3.62 6.10 30.82 0.19 -3.44 16 13 C -0.10 -3.85 5.10 30.62 0.16 -3.69 16 14 C 0.04 1.89 2.25 -11.48 -0.03 1.87 16 15 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 16 C -0.53 -28.62 8.56 25.60 0.22 -28.40 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.01 0.64 5.30 84.66 0.45 1.09 16 19 N -0.92 -54.76 11.39 21.45 0.24 -54.52 16 20 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C 0.13 6.07 5.39 86.35 0.47 6.54 16 25 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.10 2.17 8.14 -2.38 -0.02 2.16 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.62 8.11 -2.38 -0.02 1.60 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.09 2.18 6.31 -2.39 -0.02 2.17 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.08 4.59 5.12 -2.39 -0.01 4.57 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.72 324.77 5.72 -66.00 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.05 Total: 11.80 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 4.59 Total: -5.23 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -2.73 Total: -91.21 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: 0.78 Total: -26.78 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -71.72 5.72 -66.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.483 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds