Wall clock time and date at job start Tue Mar 31 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30011 * 127.32999 * 2 1 4 4 O 1.20663 * 112.30145 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82832 * 179.97438 * 5 4 3 7 7 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 8 8 C 1.47402 * 128.56698 * 180.02562 * 7 5 4 9 9 O 1.21606 * 120.00045 * 269.97525 * 8 7 5 10 10 N 1.34779 * 120.00213 * 89.96921 * 8 7 5 11 11 C 1.46925 * 120.62650 * 359.72789 * 10 8 7 12 12 C 1.52763 * 109.00444 * 233.57843 * 11 10 8 13 13 C 1.53033 * 109.38368 * 305.58912 * 12 11 10 14 14 C 1.53037 * 109.53789 * 61.24415 * 13 12 11 15 15 H 1.08991 * 109.49997 * 58.58464 * 14 13 12 16 16 C 1.50708 * 109.52198 * 178.66855 * 14 13 12 17 17 H 1.07993 * 120.00206 * 359.84579 * 16 14 13 18 18 C 1.37882 * 119.99677 * 179.85193 * 16 14 13 19 19 N 1.31518 * 119.99902 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99672 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47021 * 90.00115 * 20 18 16 22 22 H 1.48504 * 109.46771 * 209.99969 * 20 18 16 23 23 H 1.48498 * 109.47139 * 329.99988 * 20 18 16 24 24 C 1.46926 * 120.63219 * 180.02562 * 10 8 7 25 25 H 1.09006 * 109.46699 * 89.97841 * 1 2 3 26 26 H 1.09007 * 109.46789 * 209.97190 * 1 2 3 27 27 H 1.08992 * 109.47281 * 329.97605 * 1 2 3 28 28 H 1.08996 * 109.46929 * 0.02562 * 6 5 4 29 29 H 1.08996 * 109.46927 * 120.02271 * 6 5 4 30 30 H 1.09001 * 109.47123 * 240.01867 * 6 5 4 31 31 H 1.08995 * 109.58823 * 353.41585 * 11 10 8 32 32 H 1.09002 * 109.58699 * 113.84196 * 11 10 8 33 33 H 1.09010 * 109.56208 * 185.55197 * 12 11 10 34 34 H 1.09005 * 109.38373 * 65.52157 * 12 11 10 35 35 H 1.08997 * 109.46121 * 301.21790 * 13 12 11 36 36 H 1.09006 * 109.44985 * 181.25349 * 13 12 11 37 37 H 0.97002 * 119.99292 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.58605 * 246.16080 * 24 10 8 39 39 H 1.08996 * 109.58268 * 6.44347 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 -0.0005 5 6 3.6495 -0.6006 -0.0015 6 6 4.9713 -1.3244 -0.0028 7 6 2.3993 -1.1695 -0.0010 8 6 2.0402 -2.5991 -0.0011 9 8 1.8911 -3.1885 -1.0543 10 7 1.8772 -3.2532 1.1660 11 6 2.0599 -2.5562 2.4464 12 6 3.0641 -3.3324 3.2965 13 6 2.6002 -4.7845 3.4314 14 6 2.5352 -5.4318 2.0462 15 1 3.5176 -5.3857 1.5766 16 6 2.1097 -6.8712 2.1824 17 1 1.9083 -7.2846 3.1595 18 6 1.9779 -7.6602 1.0593 19 7 2.2228 -7.1566 -0.1306 20 14 1.4513 -9.4445 1.2282 21 1 -0.0295 -9.5321 1.1598 22 1 2.0459 -10.2424 0.1259 23 1 1.9190 -9.9772 2.5330 24 6 1.5199 -4.6782 1.1820 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 5.7835 -0.5975 -0.0025 29 1 5.0436 -1.9504 0.8865 30 1 5.0428 -1.9488 -0.8934 31 1 2.4378 -1.5503 2.2643 32 1 1.1064 -2.5010 2.9717 33 1 3.1327 -2.8790 4.2854 34 1 4.0420 -3.3060 2.8155 35 1 1.6119 -4.8088 3.8904 36 1 3.3044 -5.3340 4.0562 37 1 2.1297 -7.7117 -0.9207 38 1 0.5214 -4.7999 1.6018 39 1 1.5392 -5.0712 0.1655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:12 Heat of formation + Delta-G solvation = 11.979093 kcal Electronic energy + Delta-G solvation = -22548.387301 eV Core-core repulsion = 19265.862501 eV Total energy + Delta-G solvation = -3282.524800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.76481 -39.39771 -36.75378 -34.49691 -33.63358 -33.15725 -31.79335 -29.88734 -28.75189 -27.98444 -25.46729 -25.03659 -23.16913 -21.87802 -20.43952 -19.75546 -18.48492 -17.74481 -17.27997 -16.35869 -15.92558 -15.34246 -14.66933 -14.48308 -13.96132 -13.78456 -13.47767 -13.36018 -13.26718 -13.10232 -12.77058 -12.69979 -12.62299 -12.40391 -12.14922 -11.91069 -11.06436 -11.01643 -10.95762 -10.56220 -10.46353 -10.29834 -9.95893 -9.86985 -9.59300 -9.23587 -9.07932 -8.98851 -8.48615 -7.84877 -6.04337 -4.13198 1.42490 2.00946 2.89137 2.99987 3.28317 3.36056 3.37983 3.67473 4.18272 4.34582 4.39618 4.90069 5.04623 5.24930 5.26974 5.27631 5.41059 5.43875 5.45833 5.48465 5.58670 5.64344 5.71678 5.91721 5.95651 6.05764 6.11825 6.25392 6.53939 6.59840 6.79080 6.90690 7.07335 7.18446 7.57621 7.80202 7.93266 8.14198 8.29022 8.32796 8.72462 8.91046 9.52875 11.00993 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.005114 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.066965 B = 5474.213204 C = 5667.549815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.050 3.950 3 N -0.362 5.362 4 O 0.091 5.909 5 C 0.008 3.992 6 C -0.078 4.078 7 C -0.234 4.234 8 C 0.586 3.414 9 O -0.523 6.523 10 N -0.593 5.593 11 C 0.111 3.889 12 C -0.133 4.133 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.112 3.888 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.045 0.955 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 12.980 3.625 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 N -0.070 5.070 4 O 0.029 5.971 5 C -0.055 4.055 6 C -0.135 4.135 7 C -0.241 4.241 8 C 0.370 3.630 9 O -0.399 6.399 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.171 4.171 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.048 0.952 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.008 4.008 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.320 13.897 2.870 14.251 hybrid contribution -0.407 -1.685 0.090 1.736 sum 0.913 12.212 2.960 12.599 Atomic orbital electron populations 1.20195 0.85372 1.03894 1.03837 1.24732 0.98510 0.86749 1.01197 1.73556 0.89251 1.23463 1.20702 1.84488 1.21416 1.22803 1.68361 1.24595 0.97614 0.83425 0.99874 1.20463 0.88664 0.99133 1.05229 1.22185 0.92615 0.96075 1.13217 1.16941 0.78156 0.83388 0.84475 1.90839 1.50736 1.67479 1.30868 1.48474 1.67020 1.12898 1.04100 1.21521 0.99375 0.95214 0.85161 1.21877 0.98711 0.98008 0.98520 1.21634 0.99954 0.92835 1.00439 1.18961 0.95586 0.93705 0.89592 0.95241 1.21066 1.47233 0.94616 0.93063 0.92311 1.25053 0.95014 0.98513 0.95405 1.69879 1.47931 1.36220 0.97774 0.86586 0.78784 0.84871 0.77733 1.20629 1.21187 1.19918 1.22376 0.97521 0.74268 1.06590 0.89724 0.89787 0.90182 0.89521 0.88607 0.88467 0.91579 0.91920 0.92096 0.92197 0.93101 0.92874 0.92591 0.93692 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.49 36.01 0.38 -0.54 16 2 C 0.05 0.75 7.59 -79.77 -0.61 0.15 16 3 N -0.36 -5.48 12.01 34.78 0.42 -5.06 16 4 O 0.09 1.29 11.06 18.65 0.21 1.50 16 5 C 0.01 0.11 7.44 -34.63 -0.26 -0.14 16 6 C -0.08 -0.86 10.33 36.01 0.37 -0.49 16 7 C -0.23 -3.88 4.23 -102.89 -0.44 -4.31 16 8 C 0.59 11.81 7.52 -12.53 -0.09 11.72 16 9 O -0.52 -12.84 16.52 5.27 0.09 -12.75 16 10 N -0.59 -11.57 2.98 -174.34 -0.52 -12.09 16 11 C 0.11 1.73 6.31 -3.93 -0.02 1.70 16 12 C -0.13 -2.04 6.06 -26.84 -0.16 -2.21 16 13 C -0.11 -2.10 5.11 -26.70 -0.14 -2.24 16 14 C 0.04 0.96 2.25 -91.67 -0.21 0.76 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -13.66 8.57 -34.43 -0.29 -13.95 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 19 N -0.88 -25.00 11.39 55.43 0.63 -24.37 16 20 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.11 2.62 5.40 -3.73 -0.02 2.60 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.93 6.25 -51.93 -0.32 0.61 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.12 3.40 5.12 -51.93 -0.27 3.13 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -30.91 324.68 -6.51 -37.43 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.63 Total: 0.06 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.58 Total: -5.36 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.53 Total: -41.53 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.29 Total: -11.25 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.91 -6.51 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.408 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds