Wall clock time and date at job start Tue Mar 31 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30011 * 127.32999 * 2 1 4 4 O 1.20663 * 112.30145 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82832 * 179.97438 * 5 4 3 7 7 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 8 8 C 1.47402 * 128.56698 * 180.02562 * 7 5 4 9 9 O 1.21606 * 120.00045 * 269.97525 * 8 7 5 10 10 N 1.34779 * 120.00213 * 89.96921 * 8 7 5 11 11 C 1.46925 * 120.62650 * 359.72789 * 10 8 7 12 12 C 1.52763 * 109.00444 * 233.57843 * 11 10 8 13 13 C 1.53033 * 109.38368 * 305.58912 * 12 11 10 14 14 C 1.53037 * 109.53789 * 61.24415 * 13 12 11 15 15 H 1.08991 * 109.49997 * 58.58464 * 14 13 12 16 16 C 1.50708 * 109.52198 * 178.66855 * 14 13 12 17 17 H 1.07993 * 120.00206 * 359.84579 * 16 14 13 18 18 C 1.37882 * 119.99677 * 179.85193 * 16 14 13 19 19 N 1.31518 * 119.99902 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99672 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47021 * 90.00115 * 20 18 16 22 22 H 1.48504 * 109.46771 * 209.99969 * 20 18 16 23 23 H 1.48498 * 109.47139 * 329.99988 * 20 18 16 24 24 C 1.46926 * 120.63219 * 180.02562 * 10 8 7 25 25 H 1.09006 * 109.46699 * 89.97841 * 1 2 3 26 26 H 1.09007 * 109.46789 * 209.97190 * 1 2 3 27 27 H 1.08992 * 109.47281 * 329.97605 * 1 2 3 28 28 H 1.08996 * 109.46929 * 0.02562 * 6 5 4 29 29 H 1.08996 * 109.46927 * 120.02271 * 6 5 4 30 30 H 1.09001 * 109.47123 * 240.01867 * 6 5 4 31 31 H 1.08995 * 109.58823 * 353.41585 * 11 10 8 32 32 H 1.09002 * 109.58699 * 113.84196 * 11 10 8 33 33 H 1.09010 * 109.56208 * 185.55197 * 12 11 10 34 34 H 1.09005 * 109.38373 * 65.52157 * 12 11 10 35 35 H 1.08997 * 109.46121 * 301.21790 * 13 12 11 36 36 H 1.09006 * 109.44985 * 181.25349 * 13 12 11 37 37 H 0.97002 * 119.99292 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.58605 * 246.16080 * 24 10 8 39 39 H 1.08996 * 109.58268 * 6.44347 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 -0.0005 5 6 3.6495 -0.6006 -0.0015 6 6 4.9713 -1.3244 -0.0028 7 6 2.3993 -1.1695 -0.0010 8 6 2.0402 -2.5991 -0.0011 9 8 1.8911 -3.1885 -1.0543 10 7 1.8772 -3.2532 1.1660 11 6 2.0599 -2.5562 2.4464 12 6 3.0641 -3.3324 3.2965 13 6 2.6002 -4.7845 3.4314 14 6 2.5352 -5.4318 2.0462 15 1 3.5176 -5.3857 1.5766 16 6 2.1097 -6.8712 2.1824 17 1 1.9083 -7.2846 3.1595 18 6 1.9779 -7.6602 1.0593 19 7 2.2228 -7.1566 -0.1306 20 14 1.4513 -9.4445 1.2282 21 1 -0.0295 -9.5321 1.1598 22 1 2.0459 -10.2424 0.1259 23 1 1.9190 -9.9772 2.5330 24 6 1.5199 -4.6782 1.1820 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 5.7835 -0.5975 -0.0025 29 1 5.0436 -1.9504 0.8865 30 1 5.0428 -1.9488 -0.8934 31 1 2.4378 -1.5503 2.2643 32 1 1.1064 -2.5010 2.9717 33 1 3.1327 -2.8790 4.2854 34 1 4.0420 -3.3060 2.8155 35 1 1.6119 -4.8088 3.8904 36 1 3.3044 -5.3340 4.0562 37 1 2.1297 -7.7117 -0.9207 38 1 0.5214 -4.7999 1.6018 39 1 1.5392 -5.0712 0.1655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:11 Heat of formation + Delta-G solvation = -6.534540 kcal Electronic energy + Delta-G solvation = -22549.190113 eV Core-core repulsion = 19265.862501 eV Total energy + Delta-G solvation = -3283.327612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -45.93347 -40.99304 -38.39587 -35.75812 -35.20744 -34.52677 -33.41178 -31.60200 -29.79527 -29.09838 -27.20453 -26.63392 -24.58409 -23.45836 -21.79763 -21.12573 -19.95468 -18.99159 -18.73414 -18.11333 -17.44374 -16.86279 -16.47540 -16.03069 -15.30371 -15.17455 -14.79685 -14.66475 -14.43476 -14.32835 -14.25700 -14.04728 -13.79230 -13.56184 -13.53332 -13.39020 -12.88205 -12.71972 -12.31529 -12.24451 -12.12667 -11.86720 -11.64361 -11.33674 -10.97985 -10.94591 -10.82455 -10.52159 -10.34662 -9.51158 -8.10017 -6.26284 0.25862 0.82009 1.38734 1.42699 1.43638 1.53687 1.76199 2.23437 2.43953 3.03689 3.19211 3.24135 3.61542 3.92820 3.99663 4.14850 4.21503 4.31316 4.46238 4.51431 4.53390 4.56535 4.62538 4.73104 4.76028 4.78274 4.83810 5.01803 5.05511 5.10436 5.23770 5.27249 5.35864 5.51869 5.61781 5.89919 5.99102 6.33478 6.52233 6.85986 7.14171 7.14706 7.44057 8.93385 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.005114 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.066965 B = 5474.213204 C = 5667.549815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.369 5.369 4 O 0.098 5.902 5 C 0.031 3.969 6 C -0.080 4.080 7 C -0.266 4.266 8 C 0.589 3.411 9 O -0.580 6.580 10 N -0.592 5.592 11 C 0.108 3.892 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.007 1.007 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.012 3.988 19 N -0.914 5.914 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.263 1.263 24 C 0.126 3.874 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.260 0.740 38 H 0.040 0.960 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 14.513 5.671 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.077 5.077 4 O 0.038 5.962 5 C -0.033 4.033 6 C -0.137 4.137 7 C -0.274 4.274 8 C 0.376 3.624 9 O -0.460 6.460 10 N -0.322 5.322 11 C -0.014 4.014 12 C -0.163 4.163 13 C -0.143 4.143 14 C 0.020 3.980 15 H 0.011 0.989 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.553 5.553 20 Si 0.780 3.220 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.187 1.187 24 C 0.004 3.996 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.637 15.461 4.973 16.323 hybrid contribution -0.469 -2.136 -0.538 2.252 sum 1.168 13.325 4.435 14.092 Atomic orbital electron populations 1.20326 0.83678 1.04928 1.04502 1.25083 0.99630 0.85900 1.00322 1.73554 0.89447 1.23381 1.21359 1.84496 1.21196 1.22503 1.68044 1.25014 0.97870 0.83299 0.97079 1.20650 0.88386 0.99788 1.04879 1.21838 0.94403 0.94318 1.16817 1.17315 0.76853 0.84621 0.83606 1.90802 1.53213 1.69157 1.32870 1.48443 1.66330 1.11598 1.05839 1.21809 1.00643 0.95744 0.83163 1.21843 0.98198 0.95528 1.00702 1.21520 1.00654 0.95027 0.97078 1.18895 0.93390 0.93379 0.92296 0.98882 1.21501 1.46463 0.96202 0.93061 0.91953 1.25847 0.95227 1.02554 0.95108 1.70069 1.49406 1.37448 0.98388 0.85602 0.78383 0.80099 0.77870 1.20194 1.21457 1.18725 1.21823 0.97256 0.76698 1.03835 0.89230 0.90125 0.87706 0.85760 0.88145 0.89424 0.89440 0.90139 0.87875 0.92342 0.92478 0.92580 0.93133 0.94128 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 10.49 71.24 0.75 -0.99 16 2 C 0.05 1.51 7.59 45.16 0.34 1.85 16 3 N -0.37 -10.34 12.01 -44.78 -0.54 -10.88 16 4 O 0.10 2.54 11.06 76.98 0.85 3.39 16 5 C 0.03 0.82 7.44 25.48 0.19 1.01 16 6 C -0.08 -1.62 10.33 71.24 0.74 -0.89 16 7 C -0.27 -8.62 4.23 -18.75 -0.08 -8.70 16 8 C 0.59 24.22 7.52 86.66 0.65 24.87 16 9 O -0.58 -29.99 16.52 -4.05 -0.07 -30.06 16 10 N -0.59 -23.17 2.98 -823.73 -2.45 -25.63 16 11 C 0.11 3.11 6.31 86.22 0.54 3.65 16 12 C -0.12 -3.46 6.06 30.53 0.19 -3.28 16 13 C -0.11 -3.82 5.11 30.62 0.16 -3.66 16 14 C 0.04 1.91 2.25 -11.47 -0.03 1.88 16 15 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 16 C -0.53 -28.39 8.57 25.60 0.22 -28.17 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 18 C 0.01 0.67 5.30 84.66 0.45 1.12 16 19 N -0.91 -54.22 11.39 21.45 0.24 -53.98 16 20 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 C 0.13 6.05 5.40 86.35 0.47 6.52 16 25 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.19 6.25 -2.39 -0.01 2.18 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 4.62 5.12 -2.39 -0.01 4.61 16 Total: -1.00 -70.48 324.68 5.69 -64.79 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.05 Total: 11.87 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.58 Total: -4.79 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.75 Total: -90.49 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: 0.78 Total: -26.66 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -70.48 5.69 -64.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.253 kcal (2) G-P(sol) polarization free energy of solvation -70.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds