Wall clock time and date at job start Tue Mar 31 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21318 * 120.00115 * 2 1 4 4 C 1.46619 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.38626 * 126.51543 * 274.70334 * 4 2 1 6 6 C 1.50700 * 125.82322 * 359.71481 * 5 4 2 7 7 N 1.34101 * 108.34971 * 179.97438 * 5 4 2 8 8 H 0.96996 * 125.35427 * 179.97438 * 7 5 4 9 9 C 1.37844 * 109.30311 * 359.97438 * 7 5 4 10 10 C 1.46850 * 125.79889 * 180.02562 * 9 7 5 11 11 O 1.21675 * 119.99659 * 179.97438 * 10 9 7 12 12 N 1.34772 * 120.00379 * 359.97407 * 10 9 7 13 13 C 1.46499 * 120.00245 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46951 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.46994 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99838 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99775 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00383 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99835 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46795 * 90.00148 * 19 17 15 21 21 H 1.48505 * 109.47241 * 210.00204 * 19 17 15 22 22 H 1.48495 * 109.46982 * 330.00387 * 19 17 15 23 23 C 1.36234 * 108.39977 * 359.97438 * 9 7 5 24 24 C 1.50702 * 126.51181 * 180.02562 * 23 9 7 25 25 H 1.09002 * 109.47426 * 184.99036 * 1 2 3 26 26 H 1.08999 * 109.47398 * 304.98822 * 1 2 3 27 27 H 1.08998 * 109.47552 * 64.99069 * 1 2 3 28 28 H 1.09002 * 109.46849 * 84.76492 * 6 5 4 29 29 H 1.09001 * 109.47159 * 204.76335 * 6 5 4 30 30 H 1.09002 * 109.47293 * 324.77083 * 6 5 4 31 31 H 0.97004 * 119.99840 * 0.02562 * 12 10 9 32 32 H 1.08996 * 109.47013 * 300.00126 * 13 12 10 33 33 H 1.08997 * 109.46489 * 60.00346 * 13 12 10 34 34 H 1.09004 * 109.47483 * 300.00447 * 14 13 12 35 35 H 1.09001 * 109.47119 * 60.00279 * 14 13 12 36 36 H 0.97006 * 120.00198 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.47633 * 269.97989 * 24 23 9 38 38 H 1.08999 * 109.47026 * 29.98640 * 24 23 9 39 39 H 1.09000 * 109.46975 * 149.97949 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2698 -0.0006 5 6 2.5733 -2.0303 1.1095 6 6 2.2480 -1.6909 2.5412 7 7 3.2396 -3.1168 0.6923 8 1 3.5888 -3.8160 1.2667 9 6 3.3503 -3.0838 -0.6813 10 6 4.0123 -4.0960 -1.5143 11 8 4.0479 -3.9606 -2.7229 12 7 4.5805 -5.1748 -0.9400 13 6 5.2404 -6.1848 -1.7710 14 6 5.7966 -7.2957 -0.8781 15 6 6.4760 -8.3344 -1.7329 16 1 6.5076 -8.2143 -2.8057 17 6 7.0573 -9.4379 -1.1453 18 7 7.0194 -9.5839 0.1612 19 14 7.8989 -10.7257 -2.2049 20 1 9.3309 -10.3699 -2.3726 21 1 7.7923 -12.0536 -1.5484 22 1 7.2426 -10.7774 -3.5359 23 6 2.7402 -1.9534 -1.1349 24 6 2.6212 -1.5134 -2.5714 25 1 -0.3634 -1.0238 0.0894 26 1 -0.3634 0.5893 0.8419 27 1 -0.3634 0.4344 -0.9313 28 1 1.2416 -2.0368 2.7770 29 1 2.9642 -2.1791 3.2022 30 1 2.3028 -0.6111 2.6802 31 1 4.5518 -5.2828 0.0236 32 1 4.5191 -6.6078 -2.4701 33 1 6.0561 -5.7218 -2.3262 34 1 6.5178 -6.8729 -0.1785 35 1 4.9806 -7.7586 -0.3231 36 1 7.4280 -10.3605 0.5746 37 1 3.4793 -0.8949 -2.8343 38 1 2.5930 -2.3899 -3.2187 39 1 1.7049 -0.9372 -2.7001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273065307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:08 Heat of formation + Delta-G solvation = -54.830793 kcal Electronic energy + Delta-G solvation = -20872.766909 eV Core-core repulsion = 17587.345015 eV Total energy + Delta-G solvation = -3285.421894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -41.76377 -39.19050 -38.59000 -35.08601 -33.21052 -32.83593 -32.13278 -30.19094 -29.67937 -27.94742 -26.64607 -24.70786 -22.84220 -21.46266 -20.92216 -19.40330 -18.78069 -18.16095 -16.47775 -15.79338 -15.74728 -15.36218 -15.15805 -15.01259 -14.63967 -14.43637 -14.40235 -13.49655 -13.39384 -13.34240 -13.01431 -12.85565 -12.54721 -12.41663 -12.36747 -12.32519 -12.21482 -11.58721 -11.28243 -11.08899 -10.69600 -10.42229 -10.03928 -9.88461 -9.57338 -9.29668 -8.90058 -8.70354 -8.47178 -8.13359 -6.15754 -4.18759 1.43718 1.73338 2.22271 2.84524 3.25801 3.31959 3.35538 3.51828 3.52870 4.10654 4.37205 4.45450 4.74551 4.90141 4.97499 5.08739 5.15603 5.18853 5.21709 5.28204 5.47520 5.49936 5.65389 5.74409 5.84116 6.01608 6.21293 6.24148 6.26144 6.51674 6.64614 6.73902 6.76323 7.15307 7.35235 7.42654 7.51872 7.82054 7.85620 8.20077 8.47922 8.87025 9.46629 10.95874 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035889 B = 0.003106 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.005771 B = 9012.817284 C = 9609.147307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.440 3.560 3 O -0.456 6.456 4 C -0.262 4.262 5 C 0.091 3.909 6 C -0.095 4.095 7 N -0.523 5.523 8 H 0.420 0.580 9 C -0.048 4.048 10 C 0.579 3.421 11 O -0.532 6.532 12 N -0.722 5.722 13 C 0.122 3.878 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.039 4.039 24 C -0.093 4.093 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.390 0.610 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 15.865 5.394 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.315 3.685 3 O -0.329 6.329 4 C -0.270 4.270 5 C -0.030 4.030 6 C -0.153 4.153 7 N -0.119 5.119 8 H 0.259 0.741 9 C -0.160 4.160 10 C 0.366 3.634 11 O -0.409 6.409 12 N -0.371 5.371 13 C 0.001 3.999 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.047 4.047 24 C -0.150 4.150 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.223 0.777 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.858 16.208 4.679 21.211 hybrid contribution 0.675 -1.362 0.431 1.580 sum -12.183 14.846 5.109 19.873 Atomic orbital electron populations 1.22240 0.93850 1.04768 1.04549 1.21693 0.91067 0.86549 0.69171 1.90555 1.72551 1.34521 1.35293 1.19831 1.13450 1.00598 0.93110 1.20565 0.98663 0.88265 0.95531 1.20508 1.02816 1.03308 0.88627 1.41586 1.43517 1.19719 1.07040 0.74117 1.20033 1.12827 1.01255 0.81854 1.17082 0.78586 0.80638 0.87132 1.90786 1.59887 1.77042 1.13221 1.46247 1.57047 1.23059 1.10757 1.21781 0.95721 0.88201 0.94240 1.19330 0.96253 0.91809 0.95092 1.21037 1.35874 1.05549 0.93626 0.92143 1.24997 0.96063 0.98159 0.95046 1.69949 1.44799 1.29454 1.09168 0.86496 0.79884 0.80615 0.80484 1.20513 1.21140 1.19665 1.19510 0.97602 0.92379 0.95179 1.20409 1.01300 1.02517 0.90773 0.89834 0.89144 0.88802 0.89797 0.90658 0.89821 0.77717 0.92196 0.92206 0.96009 0.95995 0.92804 0.91120 0.89241 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 10.32 36.00 0.37 -1.01 16 2 C 0.44 4.90 6.53 -30.93 -0.20 4.69 16 3 O -0.46 -6.58 17.86 5.52 0.10 -6.48 16 4 C -0.26 -3.18 5.71 -105.10 -0.60 -3.78 16 5 C 0.09 0.93 7.22 -81.46 -0.59 0.34 16 6 C -0.10 -0.61 10.20 36.01 0.37 -0.24 16 7 N -0.52 -5.67 5.90 -5.55 -0.03 -5.70 16 8 H 0.42 3.46 8.13 -40.82 -0.33 3.13 16 9 C -0.05 -0.69 6.98 -82.40 -0.58 -1.27 16 10 C 0.58 10.01 7.79 -12.78 -0.10 9.91 16 11 O -0.53 -10.77 14.68 5.21 0.08 -10.69 16 12 N -0.72 -12.26 5.55 -61.57 -0.34 -12.60 16 13 C 0.12 2.53 5.61 -4.04 -0.02 2.51 16 14 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.04 -0.55 6.22 -104.07 -0.65 -1.20 16 24 C -0.09 -1.24 9.63 36.01 0.35 -0.89 16 25 H 0.08 0.50 7.99 -51.93 -0.41 0.09 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 31 H 0.39 5.56 7.55 -40.82 -0.31 5.25 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.32 6.40 -51.93 -0.33 0.99 16 39 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -33.62 339.53 -7.14 -40.76 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.57 Total: 2.22 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.20 Total: -3.77 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.36 Total: -43.24 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.18 Total: -17.17 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.62 -7.14 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273065307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.069 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds