Wall clock time and date at job start Tue Mar 31 2020 00:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21318 * 120.00115 * 2 1 4 4 C 1.46619 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.38626 * 126.51543 * 274.70334 * 4 2 1 6 6 C 1.50700 * 125.82322 * 359.71481 * 5 4 2 7 7 N 1.34101 * 108.34971 * 179.97438 * 5 4 2 8 8 H 0.96996 * 125.35427 * 179.97438 * 7 5 4 9 9 C 1.37844 * 109.30311 * 359.97438 * 7 5 4 10 10 C 1.46850 * 125.79889 * 180.02562 * 9 7 5 11 11 O 1.21675 * 119.99659 * 179.97438 * 10 9 7 12 12 N 1.34772 * 120.00379 * 359.97407 * 10 9 7 13 13 C 1.46499 * 120.00245 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46951 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.46994 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99838 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99775 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00383 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99835 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46795 * 90.00148 * 19 17 15 21 21 H 1.48505 * 109.47241 * 210.00204 * 19 17 15 22 22 H 1.48495 * 109.46982 * 330.00387 * 19 17 15 23 23 C 1.36234 * 108.39977 * 359.97438 * 9 7 5 24 24 C 1.50702 * 126.51181 * 180.02562 * 23 9 7 25 25 H 1.09002 * 109.47426 * 184.99036 * 1 2 3 26 26 H 1.08999 * 109.47398 * 304.98822 * 1 2 3 27 27 H 1.08998 * 109.47552 * 64.99069 * 1 2 3 28 28 H 1.09002 * 109.46849 * 84.76492 * 6 5 4 29 29 H 1.09001 * 109.47159 * 204.76335 * 6 5 4 30 30 H 1.09002 * 109.47293 * 324.77083 * 6 5 4 31 31 H 0.97004 * 119.99840 * 0.02562 * 12 10 9 32 32 H 1.08996 * 109.47013 * 300.00126 * 13 12 10 33 33 H 1.08997 * 109.46489 * 60.00346 * 13 12 10 34 34 H 1.09004 * 109.47483 * 300.00447 * 14 13 12 35 35 H 1.09001 * 109.47119 * 60.00279 * 14 13 12 36 36 H 0.97006 * 120.00198 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.47633 * 269.97989 * 24 23 9 38 38 H 1.08999 * 109.47026 * 29.98640 * 24 23 9 39 39 H 1.09000 * 109.46975 * 149.97949 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2698 -0.0006 5 6 2.5733 -2.0303 1.1095 6 6 2.2480 -1.6909 2.5412 7 7 3.2396 -3.1168 0.6923 8 1 3.5888 -3.8160 1.2667 9 6 3.3503 -3.0838 -0.6813 10 6 4.0123 -4.0960 -1.5143 11 8 4.0479 -3.9606 -2.7229 12 7 4.5805 -5.1748 -0.9400 13 6 5.2404 -6.1848 -1.7710 14 6 5.7966 -7.2957 -0.8781 15 6 6.4760 -8.3344 -1.7329 16 1 6.5076 -8.2143 -2.8057 17 6 7.0573 -9.4379 -1.1453 18 7 7.0194 -9.5839 0.1612 19 14 7.8989 -10.7257 -2.2049 20 1 9.3309 -10.3699 -2.3726 21 1 7.7923 -12.0536 -1.5484 22 1 7.2426 -10.7774 -3.5359 23 6 2.7402 -1.9534 -1.1349 24 6 2.6212 -1.5134 -2.5714 25 1 -0.3634 -1.0238 0.0894 26 1 -0.3634 0.5893 0.8419 27 1 -0.3634 0.4344 -0.9313 28 1 1.2416 -2.0368 2.7770 29 1 2.9642 -2.1791 3.2022 30 1 2.3028 -0.6111 2.6802 31 1 4.5518 -5.2828 0.0236 32 1 4.5191 -6.6078 -2.4701 33 1 6.0561 -5.7218 -2.3262 34 1 6.5178 -6.8729 -0.1785 35 1 4.9806 -7.7586 -0.3231 36 1 7.4280 -10.3605 0.5746 37 1 3.4793 -0.8949 -2.8343 38 1 2.5930 -2.3899 -3.2187 39 1 1.7049 -0.9372 -2.7001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273065307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:04 Heat of formation + Delta-G solvation = -77.652949 kcal Electronic energy + Delta-G solvation = -20873.756552 eV Core-core repulsion = 17587.345015 eV Total energy + Delta-G solvation = -3286.411537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.74345 -40.39823 -39.69835 -36.73354 -34.95200 -34.00451 -33.07616 -31.59858 -30.68631 -28.82092 -27.92592 -26.38255 -23.93505 -22.89591 -22.36249 -20.55175 -19.73698 -19.25631 -18.50294 -16.83359 -16.79576 -16.75082 -16.47649 -16.25986 -16.13664 -15.48632 -15.46396 -14.71466 -14.66503 -14.45031 -14.24249 -14.02349 -13.74741 -13.28013 -13.21543 -13.19832 -13.00335 -12.98047 -12.95440 -12.55920 -12.51540 -12.28199 -11.71029 -11.50153 -11.07963 -10.79638 -10.63051 -10.18660 -9.85402 -9.14024 -8.26716 -6.36844 0.35960 0.88704 1.28049 1.41101 1.41252 1.52701 1.93718 2.13779 2.23748 2.42024 3.08539 3.30062 3.71555 3.80214 4.03102 4.13206 4.38573 4.44283 4.45455 4.48866 4.63723 4.72020 4.75104 4.77593 4.79852 4.81128 4.99334 5.06962 5.10837 5.18931 5.30688 5.42673 5.53988 5.56116 5.70499 5.75637 6.12806 6.31525 6.52869 6.53762 6.75975 7.10841 7.32699 8.85064 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035889 B = 0.003106 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.005771 B = 9012.817284 C = 9609.147307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.445 3.555 3 O -0.497 6.497 4 C -0.287 4.287 5 C 0.118 3.882 6 C -0.096 4.096 7 N -0.513 5.513 8 H 0.433 0.567 9 C -0.076 4.076 10 C 0.580 3.420 11 O -0.568 6.568 12 N -0.716 5.716 13 C 0.142 3.858 14 C 0.024 3.976 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.964 3.036 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.048 4.048 24 C -0.092 4.092 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.404 0.596 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.011 0.989 36 H 0.266 0.734 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.534 16.212 6.660 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.323 3.677 3 O -0.373 6.373 4 C -0.294 4.294 5 C -0.005 4.005 6 C -0.153 4.153 7 N -0.110 5.110 8 H 0.273 0.727 9 C -0.187 4.187 10 C 0.369 3.631 11 O -0.449 6.449 12 N -0.366 5.366 13 C 0.019 3.981 14 C -0.014 4.014 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.056 4.056 24 C -0.149 4.149 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.239 0.761 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.031 16.541 5.974 22.498 hybrid contribution 0.991 -1.409 0.109 1.726 sum -13.040 15.132 6.083 20.881 Atomic orbital electron populations 1.22256 0.90333 1.06192 1.05915 1.22193 0.92787 0.85302 0.67405 1.90548 1.73681 1.35558 1.37494 1.20111 1.14660 1.01587 0.93007 1.21243 0.95645 0.86660 0.96988 1.20726 1.04842 1.03818 0.85925 1.41552 1.43232 1.20367 1.05837 0.72664 1.19518 1.14796 1.01150 0.83236 1.17413 0.77958 0.80681 0.87019 1.90760 1.61306 1.77855 1.14938 1.45980 1.56918 1.22484 1.11200 1.21281 0.95233 0.87970 0.93657 1.19132 0.95326 0.92138 0.94783 1.21460 1.36405 1.06668 0.94052 0.92281 1.25843 0.96643 1.00240 0.96308 1.70044 1.45572 1.30262 1.10646 0.85463 0.78857 0.77967 0.78888 1.19858 1.20467 1.19064 1.19745 0.97373 0.92588 0.95919 1.20373 1.02074 1.01844 0.90575 0.88528 0.87059 0.87772 0.87107 0.88849 0.89460 0.76054 0.93068 0.93313 0.97306 0.97091 0.92509 0.91858 0.91061 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 10.32 71.24 0.73 -1.36 16 2 C 0.45 9.10 6.53 27.87 0.18 9.28 16 3 O -0.50 -13.86 17.86 -3.15 -0.06 -13.92 16 4 C -0.29 -6.50 5.71 -20.18 -0.12 -6.61 16 5 C 0.12 2.11 7.22 42.30 0.31 2.41 16 6 C -0.10 -0.86 10.20 71.24 0.73 -0.13 16 7 N -0.51 -10.27 5.90 -171.47 -1.01 -11.28 16 8 H 0.43 6.29 8.13 -92.71 -0.75 5.54 16 9 C -0.08 -2.17 6.98 39.99 0.28 -1.89 16 10 C 0.58 20.44 7.79 86.50 0.67 21.11 16 11 O -0.57 -23.84 14.68 -4.27 -0.06 -23.91 16 12 N -0.72 -24.59 5.55 -466.93 -2.59 -27.18 16 13 C 0.14 6.00 5.61 86.38 0.48 6.49 16 14 C 0.02 1.16 5.09 29.85 0.15 1.31 16 15 C -0.55 -30.13 9.11 25.60 0.23 -29.90 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.47 5.46 84.65 0.46 0.94 16 18 N -0.93 -53.26 13.29 21.45 0.28 -52.98 16 19 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 C -0.05 -1.34 6.22 -19.51 -0.12 -1.46 16 24 C -0.09 -2.49 9.63 71.24 0.69 -1.80 16 25 H 0.10 0.83 7.99 -2.39 -0.02 0.81 16 26 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.81 8.07 -2.39 -0.02 0.79 16 31 H 0.40 11.44 7.55 -92.71 -0.70 10.74 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.19 6.40 -2.39 -0.02 2.18 16 39 H 0.08 1.73 8.05 -2.39 -0.02 1.71 16 Total: -1.00 -73.69 339.53 2.90 -70.79 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.37 Total: 14.98 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 4.68 Total: -1.61 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -3.32 Total: -91.44 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.12 Total: -37.83 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.69 2.90 -70.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273065307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.867 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds