Wall clock time and date at job start Mon Mar 30 2020 23:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 117.00030 * 2 1 4 4 C 1.38737 * 119.98296 * 359.97438 * 3 2 1 5 5 C 1.38083 * 120.01351 * 179.97438 * 4 3 2 6 6 C 1.38857 * 119.98440 * 0.02562 * 5 4 3 7 7 N 1.40144 * 120.01436 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99919 * 325.28707 * 7 6 5 9 9 O 1.21587 * 119.99886 * 4.49861 * 8 7 6 10 10 N 1.34778 * 119.99969 * 184.49584 * 8 7 6 11 11 C 1.46502 * 120.00092 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46915 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.46939 * 179.97438 * 12 11 10 14 14 H 1.07993 * 119.99879 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99931 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00118 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99674 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47117 * 60.00080 * 17 15 13 19 19 H 1.48505 * 109.46890 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47073 * 299.99743 * 17 15 13 21 21 C 1.38810 * 119.97187 * 0.02562 * 6 5 4 22 22 C 1.50700 * 120.00755 * 180.02562 * 21 6 5 23 23 C 1.38124 * 119.98502 * 359.72192 * 21 6 5 24 24 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46986 * 299.99569 * 1 2 3 26 26 H 1.08994 * 109.47238 * 60.00458 * 1 2 3 27 27 H 1.07994 * 119.99647 * 0.02990 * 4 3 2 28 28 H 1.07994 * 120.00697 * 179.97438 * 5 4 3 29 29 H 0.96997 * 120.00077 * 145.28126 * 7 6 5 30 30 H 0.97000 * 119.99637 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.46709 * 299.99604 * 11 10 8 32 32 H 1.08993 * 109.47410 * 59.99883 * 11 10 8 33 33 H 1.09004 * 109.47558 * 299.99714 * 12 11 10 34 34 H 1.09003 * 109.47629 * 60.00080 * 12 11 10 35 35 H 0.96993 * 120.00086 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.47073 * 90.00087 * 22 21 6 37 37 H 1.09004 * 109.46888 * 210.00100 * 22 21 6 38 38 H 1.08997 * 109.47048 * 329.99928 * 22 21 6 39 39 H 1.07998 * 119.98991 * 180.29676 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2904 2.3748 -0.0005 5 6 1.9166 3.6055 0.0000 6 6 3.3032 3.6785 0.0005 7 7 3.9395 4.9272 0.0005 8 6 3.3908 5.9631 -0.6646 9 8 2.3043 5.8375 -1.1958 10 7 4.0464 7.1383 -0.7408 11 6 3.4497 8.2644 -1.4633 12 6 4.3917 9.4683 -1.3988 13 6 3.7782 10.6266 -2.1426 14 1 2.8132 10.5150 -2.6144 15 6 4.4490 11.8287 -2.2206 16 7 5.6244 11.9644 -1.6464 17 14 3.6881 13.2646 -3.1419 18 1 2.3877 13.6192 -2.5189 19 1 4.6025 14.4331 -3.0794 20 1 3.4699 12.8828 -4.5603 21 6 4.0590 2.5142 0.0000 22 6 5.5640 2.5925 0.0012 23 6 3.4313 1.2838 0.0047 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.2119 2.3179 -0.0005 28 1 1.3281 4.5110 -0.0008 29 1 4.7747 5.0460 0.4793 30 1 4.9129 7.2385 -0.3167 31 1 3.2896 7.9843 -2.5044 32 1 2.4951 8.5247 -1.0061 33 1 4.5523 9.7487 -0.3578 34 1 5.3462 9.2078 -1.8563 35 1 6.0964 12.8099 -1.7016 36 1 5.9260 2.6104 1.0291 37 1 5.9734 1.7231 -0.5132 38 1 5.8809 3.5006 -0.5116 39 1 4.0192 0.3779 0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273173462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:08 Heat of formation + Delta-G solvation = -50.636024 kcal Electronic energy + Delta-G solvation = -20646.706750 eV Core-core repulsion = 17361.466754 eV Total energy + Delta-G solvation = -3285.239995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71611 -39.59063 -37.73722 -34.98593 -34.23002 -32.85391 -32.57190 -30.14804 -29.14480 -27.16286 -26.73578 -24.76589 -22.96943 -21.37567 -20.92381 -20.56561 -18.34251 -17.81736 -17.31748 -16.39890 -16.18167 -15.86143 -15.22267 -14.66086 -14.54057 -14.28785 -14.19136 -13.92490 -13.57383 -13.34594 -13.14900 -12.80697 -12.35651 -12.29989 -12.14167 -11.98004 -11.38510 -11.22997 -11.04575 -10.98593 -10.67043 -10.36851 -10.02879 -9.74661 -9.58230 -9.30358 -8.84350 -8.60106 -8.39542 -7.64311 -6.11099 -4.14031 1.22940 1.39384 2.87748 3.15384 3.30391 3.34237 3.35248 3.37838 3.78546 4.36295 4.54023 4.69206 4.76531 4.91124 4.95588 5.01586 5.19698 5.25652 5.26042 5.32215 5.43475 5.56575 5.73299 5.92389 6.02851 6.18876 6.33940 6.35393 6.40344 6.46095 6.71832 6.87009 6.89023 7.13897 7.31408 7.52298 7.59420 7.87422 8.18890 8.31007 8.81766 8.92137 9.50841 11.00514 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.002811 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.344040 B = 9957.394349 C =10580.899135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.106 3.894 4 C -0.193 4.193 5 C -0.077 4.077 6 C 0.138 3.862 7 N -0.689 5.689 8 C 0.697 3.303 9 O -0.582 6.582 10 N -0.732 5.732 11 C 0.139 3.861 12 C 0.013 3.987 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.080 4.080 22 C -0.114 4.114 23 C -0.135 4.135 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.404 0.596 30 H 0.395 0.605 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 -22.185 6.395 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.061 3.939 4 C -0.213 4.213 5 C -0.097 4.097 6 C 0.042 3.958 7 N -0.337 5.337 8 C 0.397 3.603 9 O -0.460 6.460 10 N -0.385 5.385 11 C 0.017 3.983 12 C -0.024 4.024 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.083 4.083 22 C -0.171 4.171 23 C -0.155 4.155 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.164 0.836 29 H 0.240 0.760 30 H 0.228 0.772 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.077 -22.230 5.886 23.354 hybrid contribution 0.203 1.132 -0.085 1.153 sum -3.874 -21.098 5.801 22.221 Atomic orbital electron populations 1.23020 0.78623 1.03618 1.01453 1.86039 1.21186 1.27056 1.89231 1.18930 0.92221 0.84055 0.98736 1.21131 0.99995 0.91775 1.08353 1.21196 0.93248 0.98324 0.96974 1.17255 0.91463 0.83561 1.03492 1.42655 1.27673 1.08434 1.54969 1.16071 0.84366 0.80428 0.79402 1.90877 1.20620 1.82597 1.51912 1.45571 1.23232 1.11345 1.58402 1.21656 0.97593 0.84358 0.94734 1.19326 0.94516 0.90622 0.97970 1.21002 1.04882 0.96046 1.34161 0.92248 1.24994 0.94872 0.98837 0.95563 1.69941 1.13606 1.25795 1.43981 0.86560 0.79060 0.81468 0.80382 1.20091 1.21242 1.20095 1.19435 0.95964 0.90993 1.01885 1.20737 0.90562 1.03325 1.02441 1.19972 0.91181 0.97293 1.07015 0.88486 0.92730 0.92640 0.85399 0.83583 0.76040 0.77180 0.92560 0.92565 0.95919 0.95917 0.92770 0.90918 0.91003 0.91289 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.54 10.50 -19.65 -0.21 -3.75 16 3 C 0.11 1.28 6.69 -39.23 -0.26 1.02 16 4 C -0.19 -2.40 9.03 -39.45 -0.36 -2.76 16 5 C -0.08 -1.11 8.70 -39.41 -0.34 -1.46 16 6 C 0.14 1.88 6.29 -83.62 -0.53 1.35 16 7 N -0.69 -9.15 4.76 -14.19 -0.07 -9.22 16 8 C 0.70 12.01 8.41 -86.91 -0.73 11.28 16 9 O -0.58 -12.08 13.76 5.29 0.07 -12.01 16 10 N -0.73 -12.56 5.56 -65.23 -0.36 -12.92 16 11 C 0.14 2.92 5.61 -4.04 -0.02 2.90 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 17 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.08 -0.92 5.89 -104.45 -0.62 -1.53 16 22 C -0.11 -0.96 9.47 36.01 0.34 -0.62 16 23 C -0.14 -1.54 9.64 -39.46 -0.38 -1.92 16 24 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.13 1.32 6.29 -52.49 -0.33 0.99 16 28 H 0.15 2.37 6.19 -52.49 -0.33 2.05 16 29 H 0.40 4.05 7.86 -40.82 -0.32 3.73 16 30 H 0.39 5.71 8.49 -40.82 -0.35 5.37 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.07 0.59 7.16 -51.93 -0.37 0.22 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -32.61 330.27 -7.74 -40.35 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.41 Total: 5.00 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.46 Total: -3.49 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.31 Total: -47.32 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.13 Total: -15.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.61 -7.74 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273173462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.288 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds