Wall clock time and date at job start Mon Mar 30 2020 23:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 117.00030 * 2 1 4 4 C 1.38737 * 119.98296 * 359.97438 * 3 2 1 5 5 C 1.38083 * 120.01351 * 179.97438 * 4 3 2 6 6 C 1.38857 * 119.98440 * 0.02562 * 5 4 3 7 7 N 1.40144 * 120.01436 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99919 * 325.28707 * 7 6 5 9 9 O 1.21587 * 119.99886 * 4.49861 * 8 7 6 10 10 N 1.34778 * 119.99969 * 184.49584 * 8 7 6 11 11 C 1.46502 * 120.00092 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46915 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.46939 * 179.97438 * 12 11 10 14 14 H 1.07993 * 119.99879 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99931 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00118 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99674 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47117 * 60.00080 * 17 15 13 19 19 H 1.48505 * 109.46890 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47073 * 299.99743 * 17 15 13 21 21 C 1.38810 * 119.97187 * 0.02562 * 6 5 4 22 22 C 1.50700 * 120.00755 * 180.02562 * 21 6 5 23 23 C 1.38124 * 119.98502 * 359.72192 * 21 6 5 24 24 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46986 * 299.99569 * 1 2 3 26 26 H 1.08994 * 109.47238 * 60.00458 * 1 2 3 27 27 H 1.07994 * 119.99647 * 0.02990 * 4 3 2 28 28 H 1.07994 * 120.00697 * 179.97438 * 5 4 3 29 29 H 0.96997 * 120.00077 * 145.28126 * 7 6 5 30 30 H 0.97000 * 119.99637 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.46709 * 299.99604 * 11 10 8 32 32 H 1.08993 * 109.47410 * 59.99883 * 11 10 8 33 33 H 1.09004 * 109.47558 * 299.99714 * 12 11 10 34 34 H 1.09003 * 109.47629 * 60.00080 * 12 11 10 35 35 H 0.96993 * 120.00086 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.47073 * 90.00087 * 22 21 6 37 37 H 1.09004 * 109.46888 * 210.00100 * 22 21 6 38 38 H 1.08997 * 109.47048 * 329.99928 * 22 21 6 39 39 H 1.07998 * 119.98991 * 180.29676 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2904 2.3748 -0.0005 5 6 1.9166 3.6055 0.0000 6 6 3.3032 3.6785 0.0005 7 7 3.9395 4.9272 0.0005 8 6 3.3908 5.9631 -0.6646 9 8 2.3043 5.8375 -1.1958 10 7 4.0464 7.1383 -0.7408 11 6 3.4497 8.2644 -1.4633 12 6 4.3917 9.4683 -1.3988 13 6 3.7782 10.6266 -2.1426 14 1 2.8132 10.5150 -2.6144 15 6 4.4490 11.8287 -2.2206 16 7 5.6244 11.9644 -1.6464 17 14 3.6881 13.2646 -3.1419 18 1 2.3877 13.6192 -2.5189 19 1 4.6025 14.4331 -3.0794 20 1 3.4699 12.8828 -4.5603 21 6 4.0590 2.5142 0.0000 22 6 5.5640 2.5925 0.0012 23 6 3.4313 1.2838 0.0047 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.2119 2.3179 -0.0005 28 1 1.3281 4.5110 -0.0008 29 1 4.7747 5.0460 0.4793 30 1 4.9129 7.2385 -0.3167 31 1 3.2896 7.9843 -2.5044 32 1 2.4951 8.5247 -1.0061 33 1 4.5523 9.7487 -0.3578 34 1 5.3462 9.2078 -1.8563 35 1 6.0964 12.8099 -1.7016 36 1 5.9260 2.6104 1.0291 37 1 5.9734 1.7231 -0.5132 38 1 5.8809 3.5006 -0.5116 39 1 4.0192 0.3779 0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273173462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:08 Heat of formation + Delta-G solvation = -72.347183 kcal Electronic energy + Delta-G solvation = -20647.648216 eV Core-core repulsion = 17361.466754 eV Total energy + Delta-G solvation = -3286.181462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.83069 -40.66669 -38.74683 -36.63593 -35.43834 -34.78252 -33.46609 -31.71687 -30.30607 -28.11541 -27.44885 -26.60402 -24.15216 -22.88819 -22.19608 -21.79539 -19.63581 -18.70042 -18.50366 -18.33636 -17.22716 -16.65865 -16.56330 -16.48434 -16.09409 -15.34689 -15.22898 -15.18144 -14.78291 -14.46819 -14.28312 -14.11887 -13.72227 -13.22599 -13.09945 -12.93793 -12.83463 -12.73039 -12.53643 -12.31963 -12.17687 -11.91682 -11.64698 -11.48619 -11.20895 -10.82848 -10.59535 -10.05194 -9.76552 -8.65307 -8.23674 -6.33819 0.29673 0.39014 1.42254 1.44624 1.51979 1.62342 2.03779 2.39486 2.41766 2.77764 3.11308 3.25549 3.84798 3.87587 4.13188 4.31450 4.36678 4.40541 4.45728 4.50623 4.51934 4.63480 4.74367 4.84106 4.85974 4.95869 5.02517 5.22976 5.27318 5.38029 5.40772 5.47682 5.53146 5.59617 5.78832 5.85806 5.98896 6.17033 6.45107 6.79109 7.00566 7.35336 7.47883 8.87983 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.002811 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.344040 B = 9957.394349 C =10580.899135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.105 3.895 4 C -0.200 4.200 5 C -0.098 4.098 6 C 0.111 3.889 7 N -0.669 5.669 8 C 0.697 3.303 9 O -0.620 6.620 10 N -0.726 5.726 11 C 0.160 3.840 12 C 0.024 3.976 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.070 4.070 22 C -0.114 4.114 23 C -0.140 4.140 24 H 0.122 0.878 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.142 0.858 28 H 0.121 0.879 29 H 0.421 0.579 30 H 0.409 0.591 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 -23.522 6.513 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.059 3.941 4 C -0.219 4.219 5 C -0.119 4.119 6 C 0.016 3.984 7 N -0.318 5.318 8 C 0.398 3.602 9 O -0.500 6.500 10 N -0.380 5.380 11 C 0.036 3.964 12 C -0.013 4.013 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.073 4.073 22 C -0.170 4.170 23 C -0.159 4.159 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.139 0.861 29 H 0.260 0.740 30 H 0.245 0.755 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.739 -23.610 6.039 24.655 hybrid contribution 0.074 1.400 -0.082 1.404 sum -3.665 -22.210 5.957 23.285 Atomic orbital electron populations 1.23309 0.76813 1.05528 1.01938 1.86036 1.23105 1.26368 1.88931 1.19114 0.92763 0.84279 0.97900 1.21240 1.00903 0.91334 1.08399 1.21113 0.93848 0.98186 0.98718 1.17464 0.91507 0.84058 1.05331 1.42340 1.27937 1.07505 1.54052 1.16129 0.83881 0.80844 0.79369 1.90860 1.22323 1.83276 1.53554 1.45213 1.23794 1.10657 1.58364 1.21122 0.96402 0.84371 0.94475 1.19127 0.94367 0.91294 0.96558 1.21435 1.05165 0.97376 1.34604 0.92281 1.25853 0.95302 1.01593 0.96359 1.70044 1.14791 1.26640 1.45071 0.85516 0.78385 0.78062 0.79200 1.19356 1.20607 1.19392 1.19729 0.97531 0.90059 1.00002 1.20836 0.88217 1.03984 1.03997 1.20323 0.91248 0.98076 1.06225 0.85945 0.91962 0.92449 0.84022 0.86142 0.74042 0.75494 0.93667 0.93537 0.97159 0.97189 0.92534 0.88810 0.89446 0.91466 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.68 10.50 -93.24 -0.98 -7.66 16 3 C 0.11 2.40 6.69 22.50 0.15 2.55 16 4 C -0.20 -4.92 9.03 22.35 0.20 -4.72 16 5 C -0.10 -2.90 8.70 22.38 0.19 -2.70 16 6 C 0.11 2.98 6.29 38.10 0.24 3.22 16 7 N -0.67 -17.39 4.76 -317.06 -1.51 -18.90 16 8 C 0.70 24.20 8.41 179.05 1.51 25.71 16 9 O -0.62 -26.43 13.76 -3.99 -0.05 -26.48 16 10 N -0.73 -24.96 5.56 -478.54 -2.66 -27.62 16 11 C 0.16 6.86 5.61 86.38 0.48 7.35 16 12 C 0.02 1.20 5.09 29.85 0.15 1.35 16 13 C -0.55 -30.38 9.11 25.60 0.23 -30.15 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 17 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C -0.07 -1.49 5.89 -19.75 -0.12 -1.61 16 22 C -0.11 -1.60 9.47 71.24 0.67 -0.93 16 23 C -0.14 -2.89 9.64 22.35 0.22 -2.68 16 24 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 26 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.14 2.91 6.29 -2.91 -0.02 2.89 16 28 H 0.12 4.15 6.19 -2.91 -0.02 4.14 16 29 H 0.42 7.84 7.86 -92.71 -0.73 7.11 16 30 H 0.41 11.65 8.49 -92.71 -0.79 10.87 16 31 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.99 8.09 -2.38 -0.02 0.97 16 38 H 0.07 0.99 7.16 -2.39 -0.02 0.97 16 39 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -70.35 330.27 2.18 -68.16 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.44 Total: 21.03 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.51 Total: -0.36 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -3.88 Total: -100.13 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.03 Total: -34.14 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.35 2.18 -68.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273173462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.183 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds